RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 PLXNC1O60486 1568 aa13.58□□□□□ -0.24
SDCBP-212ENST00000523483 ERBINQ96RT1 1412 aa13.58□□□□□ -0.24
SDCBP-212ENST00000523483 KANK1Q14678 1352 aa13.58□□□□□ -0.24
SDCBP-212ENST00000523483 ZEB1P37275 1124 aaPredicted RBP13.57□□□□□ -0.24
SDCBP-212ENST00000523483 ESF1Q9H501 851 aaKnown RBP13.57□□□□□ -0.24
SDCBP-212ENST00000523483 FRMPD1Q5SYB0 1578 aa13.57□□□□□ -0.24
SDCBP-212ENST00000523483 ABCA6Q8N139 1617 aa13.56□□□□□ -0.24
SDCBP-212ENST00000523483 DIP2CQ9Y2E4 1556 aa13.53□□□□□ -0.24
SDCBP-212ENST00000523483 ATP10AO60312 1499 aa13.53□□□□□ -0.24
SDCBP-212ENST00000523483 PZPP20742 1482 aa13.53□□□□□ -0.24
SDCBP-212ENST00000523483 ACIN1Q9UKV3 1341 aaKnown RBP13.52□□□□□ -0.25
SDCBP-212ENST00000523483 FAM135AQ9P2D6 1515 aa13.51□□□□□ -0.25
SDCBP-212ENST00000523483 MAGI2Q86UL8 1455 aa13.51□□□□□ -0.25
SDCBP-212ENST00000523483 CHGAP10645 457 aaKnown RBP13.51□□□□□ -0.25
SDCBP-212ENST00000523483 RGL3Q3MIN7 710 aa13.51□□□□□ -0.25
SDCBP-212ENST00000523483 TONSLQ96HA7 1378 aa13.5□□□□□ -0.25
SDCBP-212ENST00000523483 ZNF326Q5BKZ1 582 aaKnown RBP13.5□□□□□ -0.25
SDCBP-212ENST00000523483 CLSPNQ9HAW4 1339 aa13.5□□□□□ -0.25
SDCBP-212ENST00000523483 ZMYM4Q5VZL5 1548 aa13.49□□□□□ -0.25
SDCBP-212ENST00000523483 SENP3Q9H4L4 574 aaPredicted RBP13.47□□□□□ -0.25
SDCBP-212ENST00000523483 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
SDCBP-212ENST00000523483 ANKRD30BQ9BXX2 1392 aa13.46□□□□□ -0.26
SDCBP-212ENST00000523483 ARHGEF40Q8TER5 1519 aa13.45□□□□□ -0.26
SDCBP-212ENST00000523483 CFAP65Q6ZU64 1925 aaKnown RBP13.45□□□□□ -0.26
SDCBP-212ENST00000523483 FBXO31Q5XUX0 539 aaPredicted RBP13.44□□□□□ -0.26
SDCBP-212ENST00000523483 CCDC144AA2RUR9 1427 aa13.44□□□□□ -0.26
SDCBP-212ENST00000523483 UNC13BO14795 1591 aa13.44□□□□□ -0.26
SDCBP-212ENST00000523483 CEBPAP49715 358 aaPredicted RBP13.43□□□□□ -0.26
SDCBP-212ENST00000523483 L3MBTL2Q969R5 705 aa13.42□□□□□ -0.26
SDCBP-212ENST00000523483 EIF2AK4Q9P2K8 1649 aaKnown RBP13.41□□□□□ -0.26
SDCBP-212ENST00000523483 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
SDCBP-212ENST00000523483 PRDM15P57071 1507 aaPredicted RBP13.4□□□□□ -0.26
SDCBP-212ENST00000523483 KDM5DQ9BY66 1539 aa13.4□□□□□ -0.26
SDCBP-212ENST00000523483 IQGAP3Q86VI3 1631 aa13.4□□□□□ -0.26
SDCBP-212ENST00000523483 DCAF11Q8TEB1 546 aa13.4□□□□□ -0.26
SDCBP-212ENST00000523483 MROH1Q8NDA8 1641 aa13.4□□□□□ -0.27
SDCBP-212ENST00000523483 CEP152O94986 1710 aa13.39□□□□□ -0.27
SDCBP-212ENST00000523483 NPATQ14207 1427 aa13.39□□□□□ -0.27
SDCBP-212ENST00000523483 SIGLEC1Q9BZZ2 1709 aa13.38□□□□□ -0.27
SDCBP-212ENST00000523483 ABCC3O15438 1527 aa13.38□□□□□ -0.27
SDCBP-212ENST00000523483 NUTM2DQ5VT03 806 aaPredicted RBP13.38□□□□□ -0.27
SDCBP-212ENST00000523483 DEPDC5O75140 1603 aa13.37□□□□□ -0.27
SDCBP-212ENST00000523483 PLA2R1Q13018 1463 aa13.36□□□□□ -0.27
SDCBP-212ENST00000523483 RNF17Q9BXT8 1623 aaKnown RBP13.36□□□□□ -0.27
SDCBP-212ENST00000523483 UGGT1Q9NYU2 1555 aa13.36□□□□□ -0.27
SDCBP-212ENST00000523483 ZMYM3Q14202 1370 aa13.35□□□□□ -0.27
SDCBP-212ENST00000523483 RPRD2Q5VT52 1461 aaKnown RBP13.35□□□□□ -0.27
SDCBP-212ENST00000523483 AGLP35573 1532 aa13.35□□□□□ -0.27
SDCBP-212ENST00000523483 E9PCH4 1651 aa13.35□□□□□ -0.27
SDCBP-212ENST00000523483 EFCAB6Q5THR3 1501 aa13.34□□□□□ -0.27
SDCBP-212ENST00000523483 TET3O43151 1660 aa13.34□□□□□ -0.27
SDCBP-212ENST00000523483 PPP1R15AO75807 674 aaPredicted RBP13.34□□□□□ -0.27
SDCBP-212ENST00000523483 HIRIP3Q9BW71 556 aaPredicted RBP13.34□□□□□ -0.27
SDCBP-212ENST00000523483 IDI1Q13907 227 aa13.34□□□□□ -0.27
SDCBP-212ENST00000523483 PPP6R1Q9UPN7 881 aa13.33□□□□□ -0.27
SDCBP-212ENST00000523483 VWDEQ8N2E2 1590 aa13.33□□□□□ -0.28
SDCBP-212ENST00000523483 CLTCQ00610 1675 aaKnown RBP13.32□□□□□ -0.28
SDCBP-212ENST00000523483 REREQ9P2R6 1566 aa13.32□□□□□ -0.28
SDCBP-212ENST00000523483 TIMELESSQ9UNS1 1208 aa13.31□□□□□ -0.28
SDCBP-212ENST00000523483 CAMSAP1Q5T5Y3 1602 aa13.31□□□□□ -0.28
SDCBP-212ENST00000523483 LMTK2Q8IWU2 1503 aa13.29□□□□□ -0.28
SDCBP-212ENST00000523483 NBPF8Q3BBV2 869 aa13.29□□□□□ -0.28
SDCBP-212ENST00000523483 BCANQ96GW7 911 aa13.29□□□□□ -0.28
SDCBP-212ENST00000523483 SLC52A1Q9NWF4 448 aa13.28□□□□□ -0.28
SDCBP-212ENST00000523483 PTPRTO14522 1441 aa13.27□□□□□ -0.28
SDCBP-212ENST00000523483 BCORL1Q5H9F3 1711 aa13.27□□□□□ -0.28
SDCBP-212ENST00000523483 SPHKAPQ2M3C7 1700 aa13.27□□□□□ -0.29
SDCBP-212ENST00000523483 TRPM2O94759 1503 aa13.27□□□□□ -0.29
SDCBP-212ENST00000523483 CNTLNQ9NXG0 1405 aa13.27□□□□□ -0.29
SDCBP-212ENST00000523483 CLTCL1P53675 1640 aa13.26□□□□□ -0.29
SDCBP-212ENST00000523483 TNRQ92752 1358 aa13.25□□□□□ -0.29
SDCBP-212ENST00000523483 ERVK-7P63135 1459 aa13.25□□□□□ -0.29
SDCBP-212ENST00000523483 ARHGAP31Q2M1Z3 1444 aa13.25□□□□□ -0.29
SDCBP-212ENST00000523483 ZC3H13Q5T200 1668 aaKnown RBP13.25□□□□□ -0.29
SDCBP-212ENST00000523483 NOS1P29475 1434 aa13.24□□□□□ -0.29
SDCBP-212ENST00000523483 MADDQ8WXG6 1647 aa13.23□□□□□ -0.29
SDCBP-212ENST00000523483 CARD11Q9BXL7 1154 aa13.23□□□□□ -0.29
SDCBP-212ENST00000523483 FER1L4A9Z1Z3 1794 aa13.22□□□□□ -0.29
SDCBP-212ENST00000523483 POLR3GLQ9BT43 218 aa13.22□□□□□ -0.29
SDCBP-212ENST00000523483 ADGRF5Q8IZF2 1346 aa13.22□□□□□ -0.29
SDCBP-212ENST00000523483 SPATA31E1Q6ZUB1 1445 aa13.21□□□□□ -0.29
SDCBP-212ENST00000523483 NBPF1Q3BBV0 1214 aa13.21□□□□□ -0.29
SDCBP-212ENST00000523483 SYNMO15061 1565 aa13.21□□□□□ -0.29
SDCBP-212ENST00000523483 RIMS1Q86UR5 1692 aaKnown RBP13.21□□□□□ -0.3
SDCBP-212ENST00000523483 PREX1Q8TCU6 1659 aa13.21□□□□□ -0.3
SDCBP-212ENST00000523483 ROCK2O75116 1388 aaKnown RBP13.2□□□□□ -0.3
SDCBP-212ENST00000523483 CFAP70Q5T0N1 1121 aa13.2□□□□□ -0.3
SDCBP-212ENST00000523483 ZNF316A6NFI3 1004 aaPredicted RBP13.19□□□□□ -0.3
SDCBP-212ENST00000523483 VGFO15240 615 aaPredicted RBP13.18□□□□□ -0.3
SDCBP-212ENST00000523483 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
SDCBP-212ENST00000523483 TMEM132EQ6IEE7 984 aa13.17□□□□□ -0.3
SDCBP-212ENST00000523483 KIF1BO60333 1816 aa13.17□□□□□ -0.3
SDCBP-212ENST00000523483 HSPA5P11021 654 aaKnown RBP13.16□□□□□ -0.3
SDCBP-212ENST00000523483 STK26Q9P289 416 aa13.16□□□□□ -0.3
SDCBP-212ENST00000523483 TXNDC2Q86VQ3 553 aa13.15□□□□□ -0.3
SDCBP-212ENST00000523483 SPATA31D1Q6ZQQ2 1576 aa13.15□□□□□ -0.3
SDCBP-212ENST00000523483 C3P01024 1663 aa13.15□□□□□ -0.3
SDCBP-212ENST00000523483 PRAG1Q86YV5 1406 aa13.15□□□□□ -0.3
SDCBP-212ENST00000523483 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
SDCBP-212ENST00000523483 EID1Q9Y6B2 187 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms