RNA–Protein interactions for RNA: ENST00000516080.1

RNU4-49P-201, Transcript of RNA, U4 small nuclear 49, pseudogene, humanhuman

BASIC

Gene RNU4-49P, Length 140 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-49P-201ENST00000516080 PPP1R3GB7ZBB8 358 aa8.43□□□□□ -1.06
RNU4-49P-201ENST00000516080 TSHZ2Q9NRE2 1034 aa8.43□□□□□ -1.06
RNU4-49P-201ENST00000516080 DDX12PQ92771 950 aa8.42□□□□□ -1.06
RNU4-49P-201ENST00000516080 HCSTQ9UBK5 93 aa8.42□□□□□ -1.06
RNU4-49P-201ENST00000516080 C6orf132Q5T0Z8 1188 aa8.4□□□□□ -1.06
RNU4-49P-201ENST00000516080 BHMG1C9JSJ3 638 aaPredicted RBP8.39□□□□□ -1.07
RNU4-49P-201ENST00000516080 NBPF3Q9H094 633 aa8.39□□□□□ -1.07
RNU4-49P-201ENST00000516080 COL9A1P20849 921 aa8.38□□□□□ -1.07
RNU4-49P-201ENST00000516080 NBR1Q14596 966 aa8.38□□□□□ -1.07
RNU4-49P-201ENST00000516080 MRPL50Q8N5N7 158 aaKnown RBP8.38□□□□□ -1.07
RNU4-49P-201ENST00000516080 KCTD12Q96CX2 325 aaKnown RBP8.38□□□□□ -1.07
RNU4-49P-201ENST00000516080 RBM33Q96EV2 1170 aaKnown RBP8.38□□□□□ -1.07
RNU4-49P-201ENST00000516080 GOLGA8CPA6NN73 597 aa8.37□□□□□ -1.07
RNU4-49P-201ENST00000516080 RABGEF1Q9UJ41 708 aa8.37□□□□□ -1.07
RNU4-49P-201ENST00000516080 ONECUT3O60422 494 aaPredicted RBP8.36□□□□□ -1.07
RNU4-49P-201ENST00000516080 EN1Q05925 392 aaPredicted RBP8.36□□□□□ -1.07
RNU4-49P-201ENST00000516080 MAP3K7O43318 606 aa8.35□□□□□ -1.07
RNU4-49P-201ENST00000516080 PLCB2Q00722 1185 aa8.34□□□□□ -1.07
RNU4-49P-201ENST00000516080 PROX2Q3B8N5 592 aa8.34□□□□□ -1.07
RNU4-49P-201ENST00000516080 ARHGEF1Q92888 912 aaKnown RBP8.34□□□□□ -1.07
RNU4-49P-201ENST00000516080 GRXCR2A6NFK2 248 aa8.33□□□□□ -1.08
RNU4-49P-201ENST00000516080 LAPTM4BQ86VI4 370 aa8.32□□□□□ -1.08
RNU4-49P-201ENST00000516080 WNT2BQ93097 391 aa8.32□□□□□ -1.08
RNU4-49P-201ENST00000516080 TRIM6-TRIM34B2RNG4 842 aa8.31□□□□□ -1.08
RNU4-49P-201ENST00000516080 CERKQ8TCT0 537 aa8.31□□□□□ -1.08
RNU4-49P-201ENST00000516080 KIAA1468Q9P260 1216 aa8.31□□□□□ -1.08
RNU4-49P-201ENST00000516080 TSR1Q2NL82 804 aaKnown RBP8.3□□□□□ -1.08
RNU4-49P-201ENST00000516080 THSD4Q6ZMP0 1018 aa8.3□□□□□ -1.08
RNU4-49P-201ENST00000516080 P3H3Q8IVL6 736 aa8.3□□□□□ -1.08
RNU4-49P-201ENST00000516080 OSBPP22059 807 aa8.29□□□□□ -1.08
RNU4-49P-201ENST00000516080 PTPN5P54829 565 aa8.29□□□□□ -1.08
RNU4-49P-201ENST00000516080 PACS2Q86VP3 889 aa8.29□□□□□ -1.08
RNU4-49P-201ENST00000516080 ANKK1Q8NFD2 765 aa8.29□□□□□ -1.08
RNU4-49P-201ENST00000516080 KCNV2Q8TDN2 545 aa8.29□□□□□ -1.08
RNU4-49P-201ENST00000516080 PLA2G2EQ9NZK7 142 aa8.27□□□□□ -1.09
RNU4-49P-201ENST00000516080 PRIM1P49642 420 aaKnown RBP8.26□□□□□ -1.09
RNU4-49P-201ENST00000516080 PRSS12P56730 875 aa8.26□□□□□ -1.09
RNU4-49P-201ENST00000516080 FAM98CQ17RN3 349 aaKnown RBP8.25□□□□□ -1.09
RNU4-49P-201ENST00000516080 CDCA7LQ96GN5 454 aa8.25□□□□□ -1.09
RNU4-49P-201ENST00000516080 ZFRQ96KR1 1074 aaKnown RBP8.25□□□□□ -1.09
RNU4-49P-201ENST00000516080 SEPT9Q9UHD8 586 aaPredicted RBP8.24□□□□□ -1.09
RNU4-49P-201ENST00000516080 TSKSQ9UJT2 592 aa8.24□□□□□ -1.09
RNU4-49P-201ENST00000516080 SOWAHBA6NEL2 793 aa8.23□□□□□ -1.09
RNU4-49P-201ENST00000516080 RBM27Q9P2N5 1060 aaKnown RBP8.23□□□□□ -1.09
RNU4-49P-201ENST00000516080 MLLT3P42568 568 aaPredicted RBP8.21□□□□□ -1.1
RNU4-49P-201ENST00000516080 CDHR5Q9HBB8 845 aa8.21□□□□□ -1.1
RNU4-49P-201ENST00000516080 NBPF26B4DH59 902 aa8.2□□□□□ -1.1
RNU4-49P-201ENST00000516080 BCAMP50895 628 aa8.2□□□□□ -1.1
RNU4-49P-201ENST00000516080 HAP1P54257 671 aaPredicted RBP8.2□□□□□ -1.1
RNU4-49P-201ENST00000516080 NYAP1Q6ZVC0 841 aa8.2□□□□□ -1.1
RNU4-49P-201ENST00000516080 LRCH3Q96II8 777 aa8.19□□□□□ -1.1
RNU4-49P-201ENST00000516080 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.19□□□□□ -1.1
RNU4-49P-201ENST00000516080 TATDN2Q93075 761 aa8.18□□□□□ -1.1
RNU4-49P-201ENST00000516080 NPDC1Q9NQX5 325 aaPredicted RBP8.18□□□□□ -1.1
RNU4-49P-201ENST00000516080 FAM198AQ9UFP1 575 aa8.18□□□□□ -1.1
RNU4-49P-201ENST00000516080 IFFO2Q5TF58 517 aa8.17□□□□□ -1.1
RNU4-49P-201ENST00000516080 PNMA3Q9UL41 463 aa8.17□□□□□ -1.1
RNU4-49P-201ENST00000516080 TTC13Q8NBP0 860 aa8.16□□□□□ -1.1
RNU4-49P-201ENST00000516080 TSR3Q9UJK0 312 aaKnown RBP8.16□□□□□ -1.1
RNU4-49P-201ENST00000516080 SMAPO00193 183 aa8.15□□□□□ -1.1
RNU4-49P-201ENST00000516080 HDGFP51858 240 aaKnown RBP8.15□□□□□ -1.1
RNU4-49P-201ENST00000516080 WBP1LQ9NX94 342 aa8.15□□□□□ -1.1
RNU4-49P-201ENST00000516080 HPS5Q9UPZ3 1129 aa8.15□□□□□ -1.1
RNU4-49P-201ENST00000516080 SEMA3EO15041 775 aa8.14□□□□□ -1.11
RNU4-49P-201ENST00000516080 PADI6Q6TGC4 694 aa8.14□□□□□ -1.11
RNU4-49P-201ENST00000516080 NUDT18Q6ZVK8 323 aa8.14□□□□□ -1.11
RNU4-49P-201ENST00000516080 NUTM2FA1L443 756 aa8.13□□□□□ -1.11
RNU4-49P-201ENST00000516080 C3orf80F5H4A9 247 aa8.13□□□□□ -1.11
RNU4-49P-201ENST00000516080 PTGDRQ13258 359 aa8.13□□□□□ -1.11
RNU4-49P-201ENST00000516080 SMYD5Q6GMV2 418 aa8.13□□□□□ -1.11
RNU4-49P-201ENST00000516080 SAMD7Q7Z3H4 446 aa8.13□□□□□ -1.11
RNU4-49P-201ENST00000516080 PPP4CP60510 307 aa8.12□□□□□ -1.11
RNU4-49P-201ENST00000516080 ITGBL1O95965 494 aaPredicted RBP8.11□□□□□ -1.11
RNU4-49P-201ENST00000516080 TESPA1A2RU30 521 aaPredicted RBP8.1□□□□□ -1.11
RNU4-49P-201ENST00000516080 KDM2AQ9Y2K7 1162 aa8.1□□□□□ -1.11
RNU4-49P-201ENST00000516080 FCHSD2O94868 740 aa8.09□□□□□ -1.11
RNU4-49P-201ENST00000516080 VSIG10Q8N0Z9 540 aa8.09□□□□□ -1.11
RNU4-49P-201ENST00000516080 NECTIN2Q92692 538 aa8.09□□□□□ -1.11
RNU4-49P-201ENST00000516080 SLC4A3P48751 1232 aa8.08□□□□□ -1.12
RNU4-49P-201ENST00000516080 EYA1Q99502 592 aa8.08□□□□□ -1.12
RNU4-49P-201ENST00000516080 RGS20O76081 388 aa8.07□□□□□ -1.12
RNU4-49P-201ENST00000516080 KCNC4Q03721 635 aa8.07□□□□□ -1.12
RNU4-49P-201ENST00000516080 A0A0G2JS52 829 aa8.06□□□□□ -1.12
RNU4-49P-201ENST00000516080 RNF40O75150 1001 aa8.06□□□□□ -1.12
RNU4-49P-201ENST00000516080 SLF2Q8IX21 1173 aa8.06□□□□□ -1.12
RNU4-49P-201ENST00000516080 RBM46Q8TBY0 533 aaKnown RBP8.06□□□□□ -1.12
RNU4-49P-201ENST00000516080 SWT1Q5T5J6 900 aaKnown RBP8.05□□□□□ -1.12
RNU4-49P-201ENST00000516080 ADGRG1Q9Y653 693 aa8.05□□□□□ -1.12
RNU4-49P-201ENST00000516080 DNAJB2P25686 324 aa8.04□□□□□ -1.12
RNU4-49P-201ENST00000516080 HIC1Q14526 733 aa8.04□□□□□ -1.12
RNU4-49P-201ENST00000516080 RBM26Q5T8P6 1007 aaKnown RBP8.03□□□□□ -1.12
RNU4-49P-201ENST00000516080 OATP04181 439 aa8.01□□□□□ -1.13
RNU4-49P-201ENST00000516080 TJAP1Q5JTD0 557 aa8□□□□□ -1.13
RNU4-49P-201ENST00000516080 PRR14Q9BWN1 585 aa8□□□□□ -1.13
RNU4-49P-201ENST00000516080 TMEM134Q9H6X4 195 aa8□□□□□ -1.13
RNU4-49P-201ENST00000516080 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.99□□□□□ -1.13
RNU4-49P-201ENST00000516080 RCCD1A6NED2 376 aa7.99□□□□□ -1.13
RNU4-49P-201ENST00000516080 TULP1O00294 542 aaPredicted RBP7.99□□□□□ -1.13
RNU4-49P-201ENST00000516080 APLP1P51693 650 aa7.99□□□□□ -1.13
RNU4-49P-201ENST00000516080 IL21Q9HBE4 155 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms