RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MRPL50Q8N5N7 158 aaKnown RBP8.8□□□□□ -1
USP54-217ENST00000498213 CC2D2AQ9P2K1 1620 aa8.8□□□□□ -1
USP54-217ENST00000498213 WNT2BQ93097 391 aa8.79□□□□□ -1
USP54-217ENST00000498213 NBPF3Q9H094 633 aa8.77□□□□□ -1.01
USP54-217ENST00000498213 EMILIN3Q9NT22 766 aa8.77□□□□□ -1.01
USP54-217ENST00000498213 PLCB2Q00722 1185 aa8.76□□□□□ -1.01
USP54-217ENST00000498213 TSHZ2Q9NRE2 1034 aa8.75□□□□□ -1.01
USP54-217ENST00000498213 BICRAQ9NZM4 1560 aa8.74□□□□□ -1.01
USP54-217ENST00000498213 PPP1R3GB7ZBB8 358 aa8.74□□□□□ -1.01
USP54-217ENST00000498213 PCDHGA10Q9Y5H3 936 aa8.74□□□□□ -1.01
USP54-217ENST00000498213 IFFO2Q5TF58 517 aa8.73□□□□□ -1.01
USP54-217ENST00000498213 NACADO15069 1562 aa8.72□□□□□ -1.01
USP54-217ENST00000498213 E2F4Q16254 413 aa8.71□□□□□ -1.02
USP54-217ENST00000498213 PROX2Q3B8N5 592 aa8.71□□□□□ -1.02
USP54-217ENST00000498213 TYW1BQ6NUM6 668 aa8.71□□□□□ -1.02
USP54-217ENST00000498213 FBXW7Q969H0 707 aa8.71□□□□□ -1.02
USP54-217ENST00000498213 RABGEF1Q9UJ41 708 aa8.71□□□□□ -1.02
USP54-217ENST00000498213 PHF14O94880 888 aa8.7□□□□□ -1.02
USP54-217ENST00000498213 COL9A1P20849 921 aa8.7□□□□□ -1.02
USP54-217ENST00000498213 CAMK2BQ13554 666 aa8.7□□□□□ -1.02
USP54-217ENST00000498213 DPYSL4O14531 572 aa8.69□□□□□ -1.02
USP54-217ENST00000498213 RGS20O76081 388 aa8.69□□□□□ -1.02
USP54-217ENST00000498213 HAP1P54257 671 aaPredicted RBP8.69□□□□□ -1.02
USP54-217ENST00000498213 ANKK1Q8NFD2 765 aa8.69□□□□□ -1.02
USP54-217ENST00000498213 A0A0G2JS52 829 aa8.68□□□□□ -1.02
USP54-217ENST00000498213 UNC13AQ9UPW8 1703 aa8.68□□□□□ -1.02
USP54-217ENST00000498213 CUX2O14529 1486 aa8.67□□□□□ -1.02
USP54-217ENST00000498213 LAPTM4BQ86VI4 370 aa8.65□□□□□ -1.02
USP54-217ENST00000498213 KIAA1468Q9P260 1216 aa8.65□□□□□ -1.02
USP54-217ENST00000498213 BCAMP50895 628 aa8.64□□□□□ -1.03
USP54-217ENST00000498213 EPAS1Q99814 870 aa8.64□□□□□ -1.03
USP54-217ENST00000498213 C6orf132Q5T0Z8 1188 aa8.63□□□□□ -1.03
USP54-217ENST00000498213 SOWAHBA6NEL2 793 aa8.62□□□□□ -1.03
USP54-217ENST00000498213 ONECUT3O60422 494 aaPredicted RBP8.62□□□□□ -1.03
USP54-217ENST00000498213 ZFRQ96KR1 1074 aaKnown RBP8.62□□□□□ -1.03
USP54-217ENST00000498213 IRX2Q9BZI1 471 aaPredicted RBP8.62□□□□□ -1.03
USP54-217ENST00000498213 SPDYE16A6NNV3 312 aaPredicted RBP8.61□□□□□ -1.03
USP54-217ENST00000498213 RBM33Q96EV2 1170 aaKnown RBP8.61□□□□□ -1.03
USP54-217ENST00000498213 SEPT9Q9UHD8 586 aaPredicted RBP8.61□□□□□ -1.03
USP54-217ENST00000498213 ITGBL1O95965 494 aaPredicted RBP8.6□□□□□ -1.03
USP54-217ENST00000498213 P3H3Q8IVL6 736 aa8.6□□□□□ -1.03
USP54-217ENST00000498213 EIF4G1Q04637 1599 aaKnown RBP8.6□□□□□ -1.03
USP54-217ENST00000498213 TRIM6-TRIM34B2RNG4 842 aa8.59□□□□□ -1.03
USP54-217ENST00000498213 PDIA6Q15084 440 aa8.59□□□□□ -1.03
USP54-217ENST00000498213 DDX12PQ92771 950 aa8.59□□□□□ -1.03
USP54-217ENST00000498213 NYAP1Q6ZVC0 841 aa8.58□□□□□ -1.04
USP54-217ENST00000498213 WBP1LQ9NX94 342 aa8.58□□□□□ -1.04
USP54-217ENST00000498213 FAM98CQ17RN3 349 aaKnown RBP8.56□□□□□ -1.04
USP54-217ENST00000498213 ARIH1Q9Y4X5 557 aaPredicted RBP8.56□□□□□ -1.04
USP54-217ENST00000498213 ERCC6Q03468 1493 aa8.56□□□□□ -1.04
USP54-217ENST00000498213 NBR1Q14596 966 aa8.55□□□□□ -1.04
USP54-217ENST00000498213 KCNV2Q8TDN2 545 aa8.55□□□□□ -1.04
USP54-217ENST00000498213 KCNC4Q03721 635 aa8.54□□□□□ -1.04
USP54-217ENST00000498213 ARHGEF1Q92888 912 aaKnown RBP8.54□□□□□ -1.04
USP54-217ENST00000498213 LRCH3Q96II8 777 aa8.54□□□□□ -1.04
USP54-217ENST00000498213 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.54□□□□□ -1.04
USP54-217ENST00000498213 GRXCR2A6NFK2 248 aa8.53□□□□□ -1.04
USP54-217ENST00000498213 MAP3K7O43318 606 aa8.53□□□□□ -1.04
USP54-217ENST00000498213 EN1Q05925 392 aaPredicted RBP8.53□□□□□ -1.04
USP54-217ENST00000498213 TSR3Q9UJK0 312 aaKnown RBP8.53□□□□□ -1.04
USP54-217ENST00000498213 HPS5Q9UPZ3 1129 aa8.53□□□□□ -1.04
USP54-217ENST00000498213 TSR1Q2NL82 804 aaKnown RBP8.52□□□□□ -1.05
USP54-217ENST00000498213 PACS2Q86VP3 889 aa8.52□□□□□ -1.05
USP54-217ENST00000498213 TSKSQ9UJT2 592 aa8.51□□□□□ -1.05
USP54-217ENST00000498213 VSIG10Q8N0Z9 540 aa8.48□□□□□ -1.05
USP54-217ENST00000498213 PPP4CP60510 307 aa8.47□□□□□ -1.05
USP54-217ENST00000498213 CDCA7LQ96GN5 454 aa8.47□□□□□ -1.05
USP54-217ENST00000498213 SMAPO00193 183 aa8.46□□□□□ -1.06
USP54-217ENST00000498213 PRSS12P56730 875 aa8.45□□□□□ -1.06
USP54-217ENST00000498213 Q6ZNB5 142 aa8.45□□□□□ -1.06
USP54-217ENST00000498213 SHROOM4Q9ULL8 1493 aa8.45□□□□□ -1.06
USP54-217ENST00000498213 SAMD7Q7Z3H4 446 aa8.44□□□□□ -1.06
USP54-217ENST00000498213 CERKQ8TCT0 537 aa8.44□□□□□ -1.06
USP54-217ENST00000498213 KDM2AQ9Y2K7 1162 aa8.44□□□□□ -1.06
USP54-217ENST00000498213 FAM198AQ9UFP1 575 aa8.43□□□□□ -1.06
USP54-217ENST00000498213 PRIM1P49642 420 aaKnown RBP8.42□□□□□ -1.06
USP54-217ENST00000498213 PNMA3Q9UL41 463 aa8.42□□□□□ -1.06
USP54-217ENST00000498213 NBPF26B4DH59 902 aa8.41□□□□□ -1.06
USP54-217ENST00000498213 OSBPP22059 807 aa8.41□□□□□ -1.06
USP54-217ENST00000498213 MLLT3P42568 568 aaPredicted RBP8.41□□□□□ -1.06
USP54-217ENST00000498213 TATDN2Q93075 761 aa8.41□□□□□ -1.06
USP54-217ENST00000498213 C3orf80F5H4A9 247 aa8.4□□□□□ -1.06
USP54-217ENST00000498213 SEMA3EO15041 775 aa8.4□□□□□ -1.06
USP54-217ENST00000498213 TJAP1Q5JTD0 557 aa8.4□□□□□ -1.06
USP54-217ENST00000498213 SMYD5Q6GMV2 418 aa8.39□□□□□ -1.07
USP54-217ENST00000498213 RNF40O75150 1001 aa8.38□□□□□ -1.07
USP54-217ENST00000498213 HDGFP51858 240 aaKnown RBP8.38□□□□□ -1.07
USP54-217ENST00000498213 MTRQ99707 1265 aa8.38□□□□□ -1.07
USP54-217ENST00000498213 CDHR5Q9HBB8 845 aa8.38□□□□□ -1.07
USP54-217ENST00000498213 IL21Q9HBE4 155 aa8.38□□□□□ -1.07
USP54-217ENST00000498213 LAPTM4AQ15012 233 aa8.37□□□□□ -1.07
USP54-217ENST00000498213 NUDT18Q6ZVK8 323 aa8.37□□□□□ -1.07
USP54-217ENST00000498213 NUTM2FA1L443 756 aa8.35□□□□□ -1.07
USP54-217ENST00000498213 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
USP54-217ENST00000498213 GFRA3O60609 400 aa8.35□□□□□ -1.07
USP54-217ENST00000498213 PRKD2Q9BZL6 878 aa8.35□□□□□ -1.07
USP54-217ENST00000498213 RBM27Q9P2N5 1060 aaKnown RBP8.35□□□□□ -1.07
USP54-217ENST00000498213 SCRIBQ14160 1630 aa8.34□□□□□ -1.07
USP54-217ENST00000498213 PPP1R18Q6NYC8 613 aa8.33□□□□□ -1.08
USP54-217ENST00000498213 ZNF516Q92618 1163 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 415.7 ms