RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 HFM1A2PYH4 1435 aa25.69■■□□□ 1.7
HDAC6-235ENST00000495515 WASHC2CQ9Y4E1 1318 aa25.66■■□□□ 1.7
HDAC6-235ENST00000495515 NAIPQ13075 1403 aa25.66■■□□□ 1.7
HDAC6-235ENST00000495515 FAM135AQ9P2D6 1515 aa25.66■■□□□ 1.7
HDAC6-235ENST00000495515 KANK1Q14678 1352 aa25.66■■□□□ 1.7
HDAC6-235ENST00000495515 RNF17Q9BXT8 1623 aaKnown RBP25.66■■□□□ 1.7
HDAC6-235ENST00000495515 PTPRMP28827 1452 aa25.66■■□□□ 1.7
HDAC6-235ENST00000495515 RIMS1Q86UR5 1692 aaKnown RBP25.64■■□□□ 1.7
HDAC6-235ENST00000495515 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.64■■□□□ 1.71e-10■□□□□ 11
HDAC6-235ENST00000495515 FER1L4A9Z1Z3 1794 aa25.63■■□□□ 1.69
HDAC6-235ENST00000495515 TRIM26Q12899 539 aaPredicted RBP25.61■■□□□ 1.69
HDAC6-235ENST00000495515 KDM5DQ9BY66 1539 aa25.61■■□□□ 1.69
HDAC6-235ENST00000495515 PRDM15P57071 1507 aaPredicted RBP25.59■■□□□ 1.69
HDAC6-235ENST00000495515 GCC2Q8IWJ2 1684 aa25.59■■□□□ 1.69
HDAC6-235ENST00000495515 DEPDC5O75140 1603 aa25.58■■□□□ 1.69
HDAC6-235ENST00000495515 ZMYM3Q14202 1370 aa25.57■■□□□ 1.68
HDAC6-235ENST00000495515 MROH1Q8NDA8 1641 aa25.57■■□□□ 1.68
HDAC6-235ENST00000495515 ACIN1Q9UKV3 1341 aaKnown RBP25.57■■□□□ 1.68
HDAC6-235ENST00000495515 SETD5Q9C0A6 1442 aa25.54■■□□□ 1.68
HDAC6-235ENST00000495515 ABCC3O15438 1527 aa25.54■■□□□ 1.68
HDAC6-235ENST00000495515 PLPPR3Q6T4P5 718 aa25.54■■□□□ 1.68
HDAC6-235ENST00000495515 CLTCQ00610 1675 aaKnown RBP25.53■■□□□ 1.68
HDAC6-235ENST00000495515 ZC3H13Q5T200 1668 aaKnown RBP25.53■■□□□ 1.68
HDAC6-235ENST00000495515 NUP155O75694 1391 aa25.53■■□□□ 1.68
HDAC6-235ENST00000495515 MROH2AA6NES4 1674 aa25.52■■□□□ 1.68
HDAC6-235ENST00000495515 UNC13BO14795 1591 aa25.52■■□□□ 1.68
HDAC6-235ENST00000495515 CEBPAP49715 358 aaPredicted RBP25.51■■□□□ 1.67
HDAC6-235ENST00000495515 VWDEQ8N2E2 1590 aa25.49■■□□□ 1.67
HDAC6-235ENST00000495515 TRIM52Q96A61 297 aa25.49■■□□□ 1.67
HDAC6-235ENST00000495515 LMTK2Q8IWU2 1503 aa25.48■■□□□ 1.67
HDAC6-235ENST00000495515 PZPP20742 1482 aa25.45■■□□□ 1.66
HDAC6-235ENST00000495515 NPATQ14207 1427 aa25.45■■□□□ 1.66
HDAC6-235ENST00000495515 ARHGAP31Q2M1Z3 1444 aa25.45■■□□□ 1.66
HDAC6-235ENST00000495515 RAB3GAP2Q9H2M9 1393 aa25.44■■□□□ 1.66
HDAC6-235ENST00000495515 C3P01024 1663 aa25.44■■□□□ 1.66
HDAC6-235ENST00000495515 HRCP23327 699 aa25.43■■□□□ 1.66
HDAC6-235ENST00000495515 CEP152O94986 1710 aa25.43■■□□□ 1.66
HDAC6-235ENST00000495515 CAMSAP1Q5T5Y3 1602 aa25.42■■□□□ 1.66
HDAC6-235ENST00000495515 IQGAP3Q86VI3 1631 aa25.41■■□□□ 1.66
HDAC6-235ENST00000495515 LMTK3Q96Q04 1460 aa25.4■■□□□ 1.66
HDAC6-235ENST00000495515 EFCAB6Q5THR3 1501 aa25.38■■□□□ 1.65
HDAC6-235ENST00000495515 FBXO31Q5XUX0 539 aaPredicted RBP25.38■■□□□ 1.65
HDAC6-235ENST00000495515 TET3O43151 1660 aa25.38■■□□□ 1.65
HDAC6-235ENST00000495515 RPRD2Q5VT52 1461 aaKnown RBP25.37■■□□□ 1.65
HDAC6-235ENST00000495515 SLC4A1APQ9BWU0 796 aaKnown RBP25.37■■□□□ 1.65
HDAC6-235ENST00000495515 TNRQ92752 1358 aa25.36■■□□□ 1.65
HDAC6-235ENST00000495515 ERVK-7P63135 1459 aa25.34■■□□□ 1.65
HDAC6-235ENST00000495515 UHRF1BP1Q6BDS2 1440 aa25.32■■□□□ 1.64
HDAC6-235ENST00000495515 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
HDAC6-235ENST00000495515 PREX1Q8TCU6 1659 aa25.3■■□□□ 1.64
HDAC6-235ENST00000495515 MPHOSPH9Q99550 1183 aa25.3■■□□□ 1.64
HDAC6-235ENST00000495515 SETD1BQ9UPS6 1966 aaKnown RBP25.3■■□□□ 1.64
HDAC6-235ENST00000495515 PKD2Q13563 968 aa25.29■■□□□ 1.64
HDAC6-235ENST00000495515 NOS1P29475 1434 aa25.27■■□□□ 1.64
HDAC6-235ENST00000495515 NLRP1Q9C000 1473 aa25.26■■□□□ 1.63
HDAC6-235ENST00000495515 PCGF6Q9BYE7 350 aa25.25■■□□□ 1.63
HDAC6-235ENST00000495515 SLC52A1Q9NWF4 448 aa25.25■■□□□ 1.63
HDAC6-235ENST00000495515 E9PCH4 1651 aa25.24■■□□□ 1.63
HDAC6-235ENST00000495515 ILDR1Q86SU0 546 aaPredicted RBP25.22■■□□□ 1.63
HDAC6-235ENST00000495515 MYO3AQ8NEV4 1616 aa25.21■■□□□ 1.63
HDAC6-235ENST00000495515 A2ML1A8K2U0 1454 aa25.21■■□□□ 1.63
HDAC6-235ENST00000495515 PTPRTO14522 1441 aa25.19■■□□□ 1.62
HDAC6-235ENST00000495515 CFAP65Q6ZU64 1925 aaKnown RBP25.18■■□□□ 1.62
HDAC6-235ENST00000495515 HSPA2P54652 639 aa25.18■■□□□ 1.62
HDAC6-235ENST00000495515 STAG3Q9UJ98 1225 aa25.18■■□□□ 1.62
HDAC6-235ENST00000495515 CEP170BQ9Y4F5 1589 aaPredicted RBP25.18■■□□□ 1.62
HDAC6-235ENST00000495515 IDI1Q13907 227 aa25.17■■□□□ 1.62
HDAC6-235ENST00000495515 SYNMO15061 1565 aa25.16■■□□□ 1.62
HDAC6-235ENST00000495515 THEMISQ8N1K5 641 aaPredicted RBP25.16■■□□□ 1.62
HDAC6-235ENST00000495515 FOXD1Q16676 465 aa25.15■■□□□ 1.62
HDAC6-235ENST00000495515 ZNF142P52746 1687 aaPredicted RBP25.13■■□□□ 1.61
HDAC6-235ENST00000495515 UGGT1Q9NYU2 1555 aa25.13■■□□□ 1.61
HDAC6-235ENST00000495515 TRPM2O94759 1503 aa25.12■■□□□ 1.61
HDAC6-235ENST00000495515 SPHKAPQ2M3C7 1700 aa25.11■■□□□ 1.61
HDAC6-235ENST00000495515 PLA2R1Q13018 1463 aa25.09■■□□□ 1.61
HDAC6-235ENST00000495515 CHGAP10645 457 aaKnown RBP25.08■■□□□ 1.61
HDAC6-235ENST00000495515 CCDC144AA2RUR9 1427 aa25.07■■□□□ 1.6
HDAC6-235ENST00000495515 PIK3C2BO00750 1634 aa25.07■■□□□ 1.6
HDAC6-235ENST00000495515 ADGRB3O60242 1522 aa25.05■■□□□ 1.6
HDAC6-235ENST00000495515 STRCQ7RTU9 1775 aa25.05■■□□□ 1.6
HDAC6-235ENST00000495515 KDM5AP29375 1690 aaKnown RBP25.03■■□□□ 1.6
HDAC6-235ENST00000495515 ANKRD30BQ9BXX2 1392 aa25.03■■□□□ 1.6
HDAC6-235ENST00000495515 HDGFP51858 240 aaKnown RBP25.02■■□□□ 1.6
HDAC6-235ENST00000495515 ANKLE2Q86XL3 938 aa25.02■■□□□ 1.6
HDAC6-235ENST00000495515 UBR1Q8IWV7 1749 aa25.01■■□□□ 1.59
HDAC6-235ENST00000495515 EID1Q9Y6B2 187 aa25.01■■□□□ 1.59
HDAC6-235ENST00000495515 TMEM2Q9UHN6 1383 aa25■■□□□ 1.59
HDAC6-235ENST00000495515 CLTCL1P53675 1640 aa25■■□□□ 1.59
HDAC6-235ENST00000495515 DHX57Q6P158 1386 aaKnown RBP24.99■■□□□ 1.59
HDAC6-235ENST00000495515 DMRT2Q9Y5R5 561 aa24.98■■□□□ 1.59
HDAC6-235ENST00000495515 TMEM131LA2VDJ0 1609 aa24.97■■□□□ 1.59
HDAC6-235ENST00000495515 ZNF326Q5BKZ1 582 aaKnown RBP24.97■■□□□ 1.59
HDAC6-235ENST00000495515 SLIT1O75093 1534 aa24.96■■□□□ 1.59
HDAC6-235ENST00000495515 TXNDC2Q86VQ3 553 aa24.96■■□□□ 1.59
HDAC6-235ENST00000495515 ARHGAP23Q9P227 1491 aa24.96■■□□□ 1.59
HDAC6-235ENST00000495515 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.95■■□□□ 1.58
HDAC6-235ENST00000495515 FBXO41Q8TF61 875 aa24.95■■□□□ 1.58
HDAC6-235ENST00000495515 NCKAP5LQ9HCH0 1330 aa24.94■■□□□ 1.58
HDAC6-235ENST00000495515 PPP1R15AO75807 674 aaPredicted RBP24.92■■□□□ 1.58
HDAC6-235ENST00000495515 RIMS2Q9UQ26 1411 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms