RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 PPP6R1Q9UPN7 881 aa16.42■□□□□ 0.22
VPS13D-210ENST00000489961 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
VPS13D-210ENST00000489961 GCC2Q8IWJ2 1684 aa16.4■□□□□ 0.22
VPS13D-210ENST00000489961 FAM135AQ9P2D6 1515 aa16.4■□□□□ 0.22
VPS13D-210ENST00000489961 PTPRMP28827 1452 aa16.39■□□□□ 0.21
VPS13D-210ENST00000489961 CLTCQ00610 1675 aaKnown RBP16.39■□□□□ 0.21
VPS13D-210ENST00000489961 DEPDC5O75140 1603 aa16.38■□□□□ 0.21
VPS13D-210ENST00000489961 MROH2AA6NES4 1674 aa16.38■□□□□ 0.21
VPS13D-210ENST00000489961 KDM5DQ9BY66 1539 aa16.37■□□□□ 0.21
VPS13D-210ENST00000489961 AEBP2Q6ZN18 517 aaPredicted RBP16.37■□□□□ 0.21
VPS13D-210ENST00000489961 MROH1Q8NDA8 1641 aa16.37■□□□□ 0.21
VPS13D-210ENST00000489961 ZC3H13Q5T200 1668 aaKnown RBP16.37■□□□□ 0.21
VPS13D-210ENST00000489961 HFM1A2PYH4 1435 aa16.36■□□□□ 0.21
VPS13D-210ENST00000489961 PRDM15P57071 1507 aaPredicted RBP16.36■□□□□ 0.21
VPS13D-210ENST00000489961 WASHC2CQ9Y4E1 1318 aa16.36■□□□□ 0.21
VPS13D-210ENST00000489961 KANK1Q14678 1352 aa16.36■□□□□ 0.21
VPS13D-210ENST00000489961 NAIPQ13075 1403 aa16.36■□□□□ 0.21
VPS13D-210ENST00000489961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.21
VPS13D-210ENST00000489961 C3P01024 1663 aa16.34■□□□□ 0.21
VPS13D-210ENST00000489961 CEP152O94986 1710 aa16.33■□□□□ 0.21
VPS13D-210ENST00000489961 UNC13BO14795 1591 aa16.33■□□□□ 0.2
VPS13D-210ENST00000489961 ABCC3O15438 1527 aa16.32■□□□□ 0.2
VPS13D-210ENST00000489961 ZMYM3Q14202 1370 aa16.32■□□□□ 0.2
VPS13D-210ENST00000489961 PLPPR3Q6T4P5 718 aa16.32■□□□□ 0.2
VPS13D-210ENST00000489961 VWDEQ8N2E2 1590 aa16.3■□□□□ 0.2
VPS13D-210ENST00000489961 CEBPAP49715 358 aaPredicted RBP16.29■□□□□ 0.2
VPS13D-210ENST00000489961 CAMSAP1Q5T5Y3 1602 aa16.29■□□□□ 0.2
VPS13D-210ENST00000489961 LMTK2Q8IWU2 1503 aa16.28■□□□□ 0.2
VPS13D-210ENST00000489961 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
VPS13D-210ENST00000489961 IQGAP3Q86VI3 1631 aa16.27■□□□□ 0.19
VPS13D-210ENST00000489961 NUP155O75694 1391 aa16.26■□□□□ 0.19
VPS13D-210ENST00000489961 TRIM26Q12899 539 aaPredicted RBP16.26■□□□□ 0.19
VPS13D-210ENST00000489961 PZPP20742 1482 aa16.26■□□□□ 0.19
VPS13D-210ENST00000489961 TET3O43151 1660 aa16.25■□□□□ 0.19
VPS13D-210ENST00000489961 NPATQ14207 1427 aa16.25■□□□□ 0.19
VPS13D-210ENST00000489961 ACIN1Q9UKV3 1341 aaKnown RBP16.24■□□□□ 0.19
VPS13D-210ENST00000489961 ARHGAP31Q2M1Z3 1444 aa16.24■□□□□ 0.19
VPS13D-210ENST00000489961 EFCAB6Q5THR3 1501 aa16.24■□□□□ 0.19
VPS13D-210ENST00000489961 SETD1BQ9UPS6 1966 aaKnown RBP16.24■□□□□ 0.19
VPS13D-210ENST00000489961 TRIM52Q96A61 297 aa16.23■□□□□ 0.19
VPS13D-210ENST00000489961 PREX1Q8TCU6 1659 aa16.22■□□□□ 0.19
VPS13D-210ENST00000489961 CFAP65Q6ZU64 1925 aaKnown RBP16.21■□□□□ 0.19
VPS13D-210ENST00000489961 RAB3GAP2Q9H2M9 1393 aa16.21■□□□□ 0.19
VPS13D-210ENST00000489961 FBXO31Q5XUX0 539 aaPredicted RBP16.2■□□□□ 0.18
VPS13D-210ENST00000489961 ERVK-7P63135 1459 aa16.19■□□□□ 0.18
VPS13D-210ENST00000489961 RPRD2Q5VT52 1461 aaKnown RBP16.19■□□□□ 0.18
VPS13D-210ENST00000489961 UHRF1BP1Q6BDS2 1440 aa16.19■□□□□ 0.18
VPS13D-210ENST00000489961 E9PCH4 1651 aa16.18■□□□□ 0.18
VPS13D-210ENST00000489961 SPATA31D1Q6ZQQ2 1576 aa16.18■□□□□ 0.18
VPS13D-210ENST00000489961 TNRQ92752 1358 aa16.18■□□□□ 0.18
VPS13D-210ENST00000489961 MYO3AQ8NEV4 1616 aa16.17■□□□□ 0.18
VPS13D-210ENST00000489961 HRCP23327 699 aa16.16■□□□□ 0.18
VPS13D-210ENST00000489961 SLC4A1APQ9BWU0 796 aaKnown RBP16.15■□□□□ 0.18
VPS13D-210ENST00000489961 LMTK3Q96Q04 1460 aa16.14■□□□□ 0.17
VPS13D-210ENST00000489961 NLRP1Q9C000 1473 aa16.14■□□□□ 0.17
VPS13D-210ENST00000489961 ZNF142P52746 1687 aaPredicted RBP16.14■□□□□ 0.17
VPS13D-210ENST00000489961 NOS1P29475 1434 aa16.12■□□□□ 0.17
VPS13D-210ENST00000489961 CEP170BQ9Y4F5 1589 aaPredicted RBP16.12■□□□□ 0.17
VPS13D-210ENST00000489961 SPHKAPQ2M3C7 1700 aa16.11■□□□□ 0.17
VPS13D-210ENST00000489961 A2ML1A8K2U0 1454 aa16.11■□□□□ 0.17
VPS13D-210ENST00000489961 PKD2Q13563 968 aa16.11■□□□□ 0.17
VPS13D-210ENST00000489961 SYNMO15061 1565 aa16.11■□□□□ 0.17
VPS13D-210ENST00000489961 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
VPS13D-210ENST00000489961 SLC52A1Q9NWF4 448 aa16.08■□□□□ 0.16
VPS13D-210ENST00000489961 UGGT1Q9NYU2 1555 aa16.07■□□□□ 0.16
VPS13D-210ENST00000489961 PIK3C2BO00750 1634 aa16.06■□□□□ 0.16
VPS13D-210ENST00000489961 PTPRTO14522 1441 aa16.06■□□□□ 0.16
VPS13D-210ENST00000489961 HSPA2P54652 639 aa16.06■□□□□ 0.16
VPS13D-210ENST00000489961 IDI1Q13907 227 aa16.05■□□□□ 0.16
VPS13D-210ENST00000489961 STAG3Q9UJ98 1225 aa16.05■□□□□ 0.16
VPS13D-210ENST00000489961 UBR1Q8IWV7 1749 aa16.05■□□□□ 0.16
VPS13D-210ENST00000489961 KDM5AP29375 1690 aaKnown RBP16.05■□□□□ 0.16
VPS13D-210ENST00000489961 TRPM2O94759 1503 aa16.04■□□□□ 0.16
VPS13D-210ENST00000489961 THEMISQ8N1K5 641 aaPredicted RBP16.04■□□□□ 0.16
VPS13D-210ENST00000489961 FOXD1Q16676 465 aa16.03■□□□□ 0.16
VPS13D-210ENST00000489961 PCGF6Q9BYE7 350 aa16.03■□□□□ 0.16
VPS13D-210ENST00000489961 ADGRB3O60242 1522 aa16.02■□□□□ 0.15
VPS13D-210ENST00000489961 PLA2R1Q13018 1463 aa16.01■□□□□ 0.15
VPS13D-210ENST00000489961 CLTCL1P53675 1640 aa16■□□□□ 0.15
VPS13D-210ENST00000489961 KIF1BO60333 1816 aa15.99■□□□□ 0.15
VPS13D-210ENST00000489961 TMEM131LA2VDJ0 1609 aa15.99■□□□□ 0.15
VPS13D-210ENST00000489961 CHGAP10645 457 aaKnown RBP15.99■□□□□ 0.15
VPS13D-210ENST00000489961 MYO5BQ9ULV0 1848 aa15.98■□□□□ 0.15
VPS13D-210ENST00000489961 STRCQ7RTU9 1775 aa15.98■□□□□ 0.15
VPS13D-210ENST00000489961 POLR1AO95602 1720 aaPredicted RBP15.97■□□□□ 0.15
VPS13D-210ENST00000489961 CCDC144AA2RUR9 1427 aa15.97■□□□□ 0.15
VPS13D-210ENST00000489961 SLIT1O75093 1534 aa15.96■□□□□ 0.15
VPS13D-210ENST00000489961 ANKLE2Q86XL3 938 aa15.95■□□□□ 0.14
VPS13D-210ENST00000489961 TMEM2Q9UHN6 1383 aa15.95■□□□□ 0.14
VPS13D-210ENST00000489961 ARHGAP23Q9P227 1491 aa15.95■□□□□ 0.14
VPS13D-210ENST00000489961 EID1Q9Y6B2 187 aa15.94■□□□□ 0.14
VPS13D-210ENST00000489961 NCKAP5LQ9HCH0 1330 aa15.94■□□□□ 0.14
VPS13D-210ENST00000489961 ANKRD30BQ9BXX2 1392 aa15.93■□□□□ 0.14
VPS13D-210ENST00000489961 DMRT2Q9Y5R5 561 aa15.93■□□□□ 0.14
VPS13D-210ENST00000489961 HDGFP51858 240 aaKnown RBP15.92■□□□□ 0.14
VPS13D-210ENST00000489961 SCAF11Q99590 1463 aaKnown RBP15.91■□□□□ 0.14
VPS13D-210ENST00000489961 ZNF326Q5BKZ1 582 aaKnown RBP15.91■□□□□ 0.14
VPS13D-210ENST00000489961 TXNDC2Q86VQ3 553 aa15.91■□□□□ 0.14
VPS13D-210ENST00000489961 RIMS2Q9UQ26 1411 aa15.91■□□□□ 0.14
VPS13D-210ENST00000489961 DHX57Q6P158 1386 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms