RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 MED14O60244 1454 aa19.31■□□□□ 0.68
HDAC6-233ENST00000489352 PLXNC1O60486 1568 aa19.3■□□□□ 0.68
HDAC6-233ENST00000489352 FAM135AQ9P2D6 1515 aa19.3■□□□□ 0.68
HDAC6-233ENST00000489352 HNRNPMP52272 730 aaKnown RBP eCLIP19.29■□□□□ 0.68
HDAC6-233ENST00000489352 FBXO31Q5XUX0 539 aaPredicted RBP19.29■□□□□ 0.68
HDAC6-233ENST00000489352 UGGT1Q9NYU2 1555 aa19.27■□□□□ 0.68
HDAC6-233ENST00000489352 SYCP2Q9BX26 1530 aa19.27■□□□□ 0.68
HDAC6-233ENST00000489352 ADGBQ8N7X0 1667 aa19.27■□□□□ 0.67
HDAC6-233ENST00000489352 LRRIQ1Q96JM4 1722 aa19.25■□□□□ 0.67
HDAC6-233ENST00000489352 SRCAPQ6ZRS2 3230 aa19.23■□□□□ 0.67
HDAC6-233ENST00000489352 TRIM52Q96A61 297 aa19.23■□□□□ 0.67
HDAC6-233ENST00000489352 FAM135BQ49AJ0 1406 aa19.23■□□□□ 0.67
HDAC6-233ENST00000489352 INO80Q9ULG1 1556 aaPredicted RBP19.23■□□□□ 0.67
HDAC6-233ENST00000489352 NLRP1Q9C000 1473 aa19.22■□□□□ 0.67
HDAC6-233ENST00000489352 XIRP1Q702N8 1843 aaKnown RBP19.2■□□□□ 0.66
HDAC6-233ENST00000489352 EEA1Q15075 1411 aa19.19■□□□□ 0.66
HDAC6-233ENST00000489352 PZPP20742 1482 aa19.19■□□□□ 0.66
HDAC6-233ENST00000489352 WASHC2CQ9Y4E1 1318 aa19.19■□□□□ 0.66
HDAC6-233ENST00000489352 MIA2Q96PC5 1412 aa19.18■□□□□ 0.66
HDAC6-233ENST00000489352 ROBO1Q9Y6N7 1651 aa19.17■□□□□ 0.66
HDAC6-233ENST00000489352 PLEKHH2Q8IVE3 1493 aa19.17■□□□□ 0.66
HDAC6-233ENST00000489352 MEX3CQ5U5Q3 659 aaKnown RBP19.16■□□□□ 0.66
HDAC6-233ENST00000489352 ZNF772Q68DY9 489 aaPredicted RBP19.16■□□□□ 0.66
HDAC6-233ENST00000489352 UBTFP17480 764 aaKnown RBP19.15■□□□□ 0.66
HDAC6-233ENST00000489352 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
HDAC6-233ENST00000489352 KIF3BO15066 747 aa19.14■□□□□ 0.65
HDAC6-233ENST00000489352 CHIC1Q5VXU3 224 aa19.14■□□□□ 0.65
HDAC6-233ENST00000489352 CCDC18Q5T9S5 1454 aa19.14■□□□□ 0.65
HDAC6-233ENST00000489352 CFDP1Q9UEE9 299 aaPredicted RBP19.13■□□□□ 0.65
HDAC6-233ENST00000489352 KIAA1107Q9UPP5 1409 aa19.13■□□□□ 0.65
HDAC6-233ENST00000489352 ZC3H13Q5T200 1668 aaKnown RBP19.13■□□□□ 0.65
HDAC6-233ENST00000489352 PHLPP1O60346 1717 aa19.12■□□□□ 0.65
HDAC6-233ENST00000489352 EHMT2Q96KQ7 1210 aa19.12■□□□□ 0.65
HDAC6-233ENST00000489352 ARHGAP35Q9NRY4 1499 aa19.11■□□□□ 0.65
HDAC6-233ENST00000489352 JCADQ9P266 1359 aa19.11■□□□□ 0.65
HDAC6-233ENST00000489352 RXRBP28702 533 aa19.11■□□□□ 0.65
HDAC6-233ENST00000489352 FOXD1Q16676 465 aa19.09■□□□□ 0.65
HDAC6-233ENST00000489352 GPATCH8Q9UKJ3 1502 aaKnown RBP19.09■□□□□ 0.65
HDAC6-233ENST00000489352 DHX29Q7Z478 1369 aaKnown RBP19.08■□□□□ 0.65
HDAC6-233ENST00000489352 LRRC9Q6ZRR7 1453 aa19.06■□□□□ 0.64
HDAC6-233ENST00000489352 TXNDC2Q86VQ3 553 aa19.05■□□□□ 0.64
HDAC6-233ENST00000489352 CFAP65Q6ZU64 1925 aaKnown RBP19.05■□□□□ 0.64
HDAC6-233ENST00000489352 SCAF11Q99590 1463 aaKnown RBP19.04■□□□□ 0.64
HDAC6-233ENST00000489352 PROSER2Q86WR7 435 aaPredicted RBP19.03■□□□□ 0.64
HDAC6-233ENST00000489352 EID1Q9Y6B2 187 aa19.03■□□□□ 0.64
HDAC6-233ENST00000489352 TMEM94Q12767 1356 aa19.03■□□□□ 0.64
HDAC6-233ENST00000489352 CCNB3Q8WWL7 1395 aa19.03■□□□□ 0.64
HDAC6-233ENST00000489352 SPATA31A6Q5VVP1 1343 aa19.01■□□□□ 0.63
HDAC6-233ENST00000489352 RTEL1-TNFRSF6BF6WH68 1400 aa19■□□□□ 0.63
HDAC6-233ENST00000489352 UBR1Q8IWV7 1749 aa19■□□□□ 0.63
HDAC6-233ENST00000489352 ZRANB1Q9UGI0 708 aa19■□□□□ 0.63
HDAC6-233ENST00000489352 CASKIN1Q8WXD9 1431 aa19■□□□□ 0.63
HDAC6-233ENST00000489352 SLAIN2Q9P270 581 aa18.99■□□□□ 0.63
HDAC6-233ENST00000489352 CDK12Q9NYV4 1490 aaPredicted RBP18.97■□□□□ 0.63
HDAC6-233ENST00000489352 MSH6P52701 1360 aa18.97■□□□□ 0.63
HDAC6-233ENST00000489352 LTKP29376 864 aa18.97■□□□□ 0.63
HDAC6-233ENST00000489352 RBM33Q96EV2 1170 aaKnown RBP18.97■□□□□ 0.63
HDAC6-233ENST00000489352 NUTM2BA6NNL0 878 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-233ENST00000489352 NUTM2EB1AL46 878 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-233ENST00000489352 KCNA6P17658 529 aa18.95■□□□□ 0.62
HDAC6-233ENST00000489352 NUTM2DQ5VT03 806 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-233ENST00000489352 NUTM2AQ8IVF1 878 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-233ENST00000489352 LRP6O75581 1613 aa18.95■□□□□ 0.62
HDAC6-233ENST00000489352 ZNF644Q9H582 1327 aaPredicted RBP18.93■□□□□ 0.62
HDAC6-233ENST00000489352 COL16A1Q07092 1604 aaPredicted RBP18.92■□□□□ 0.62
HDAC6-233ENST00000489352 FGD6Q6ZV73 1430 aa18.91■□□□□ 0.62
HDAC6-233ENST00000489352 ERVK-7P63135 1459 aa18.91■□□□□ 0.62
HDAC6-233ENST00000489352 STAG3Q9UJ98 1225 aa18.91■□□□□ 0.62
HDAC6-233ENST00000489352 SLIT1O75093 1534 aa18.9■□□□□ 0.62
HDAC6-233ENST00000489352 MAP3K1Q13233 1512 aa18.9■□□□□ 0.62
HDAC6-233ENST00000489352 ARHGAP23Q9P227 1491 aa18.89■□□□□ 0.61
HDAC6-233ENST00000489352 MBD5Q9P267 1494 aa18.89■□□□□ 0.61
HDAC6-233ENST00000489352 SHPRHQ149N8 1683 aa18.89■□□□□ 0.61
HDAC6-233ENST00000489352 PRDM15P57071 1507 aaPredicted RBP18.88■□□□□ 0.61
HDAC6-233ENST00000489352 FYCO1Q9BQS8 1478 aa18.87■□□□□ 0.61
HDAC6-233ENST00000489352 TIAM1Q13009 1591 aa18.86■□□□□ 0.61
HDAC6-233ENST00000489352 NCOA2Q15596 1464 aa18.86■□□□□ 0.61
HDAC6-233ENST00000489352 AFF2P51816 1311 aa18.86■□□□□ 0.61
HDAC6-233ENST00000489352 BCANQ96GW7 911 aa18.86■□□□□ 0.61
HDAC6-233ENST00000489352 SLC26A8Q96RN1 970 aa18.86■□□□□ 0.61
HDAC6-233ENST00000489352 MTUS2Q5JR59 1369 aa18.85■□□□□ 0.61
HDAC6-233ENST00000489352 ABCC3O15438 1527 aa18.84■□□□□ 0.61
HDAC6-233ENST00000489352 RBM6P78332 1123 aaKnown RBP18.84■□□□□ 0.61
HDAC6-233ENST00000489352 RSPH4AQ5TD94 716 aa18.84■□□□□ 0.61
HDAC6-233ENST00000489352 CCDC141Q6ZP82 1450 aa18.84■□□□□ 0.61
HDAC6-233ENST00000489352 ATAD2Q6PL18 1390 aa18.83■□□□□ 0.61
HDAC6-233ENST00000489352 QTRT2Q9H974 415 aaKnown RBP18.83■□□□□ 0.6
HDAC6-233ENST00000489352 NKTRP30414 1462 aaKnown RBP18.83■□□□□ 0.6
HDAC6-233ENST00000489352 TSPY4P0CV99 314 aa18.82■□□□□ 0.6
HDAC6-233ENST00000489352 TSPY10P0CW01 314 aa18.82■□□□□ 0.6
HDAC6-233ENST00000489352 C14orf37Q86TY3 774 aa18.82■□□□□ 0.6
HDAC6-233ENST00000489352 CEP152O94986 1710 aa18.82■□□□□ 0.6
HDAC6-233ENST00000489352 RGS12O14924 1447 aa18.82■□□□□ 0.6
HDAC6-233ENST00000489352 SETBP1Q9Y6X0 1596 aa18.81■□□□□ 0.6
HDAC6-233ENST00000489352 TMEM2Q9UHN6 1383 aa18.81■□□□□ 0.6
HDAC6-233ENST00000489352 NGLY1Q96IV0 654 aa18.8■□□□□ 0.6
HDAC6-233ENST00000489352 KDM5AP29375 1690 aaKnown RBP18.79■□□□□ 0.6
HDAC6-233ENST00000489352 PIK3C2BO00750 1634 aa18.78■□□□□ 0.6
HDAC6-233ENST00000489352 AHDC1Q5TGY3 1603 aaPredicted RBP18.76■□□□□ 0.59
HDAC6-233ENST00000489352 C8orf37Q96NL8 207 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms