RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TONSLQ96HA7 1378 aa17.5■□□□□ 0.39
HDAC6-230ENST00000488543 PPP1R15AO75807 674 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-230ENST00000488543 KDM5CP41229 1560 aa17.49■□□□□ 0.39
HDAC6-230ENST00000488543 TEX14Q8IWB6 1497 aa17.49■□□□□ 0.39
HDAC6-230ENST00000488543 COL17A1Q9UMD9 1497 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-230ENST00000488543 PKD2Q13563 968 aa17.49■□□□□ 0.39
HDAC6-230ENST00000488543 KIF3BO15066 747 aa17.48■□□□□ 0.39
HDAC6-230ENST00000488543 UNC13BO14795 1591 aa17.48■□□□□ 0.39
HDAC6-230ENST00000488543 MLH3Q9UHC1 1453 aa17.47■□□□□ 0.39
HDAC6-230ENST00000488543 DHX29Q7Z478 1369 aaKnown RBP17.47■□□□□ 0.39
HDAC6-230ENST00000488543 ERBINQ96RT1 1412 aa17.46■□□□□ 0.39
HDAC6-230ENST00000488543 RICTORQ6R327 1708 aa17.46■□□□□ 0.39
HDAC6-230ENST00000488543 YEATS2Q9ULM3 1422 aa17.46■□□□□ 0.38
HDAC6-230ENST00000488543 RPRD2Q5VT52 1461 aaKnown RBP17.45■□□□□ 0.38
HDAC6-230ENST00000488543 FRMPD1Q5SYB0 1578 aa17.44■□□□□ 0.38
HDAC6-230ENST00000488543 HECW2Q9P2P5 1572 aa17.44■□□□□ 0.38
HDAC6-230ENST00000488543 A2MP01023 1474 aa17.42■□□□□ 0.38
HDAC6-230ENST00000488543 FAM135AQ9P2D6 1515 aa17.42■□□□□ 0.38
HDAC6-230ENST00000488543 ABCA6Q8N139 1617 aa17.41■□□□□ 0.38
HDAC6-230ENST00000488543 MAGI2Q86UL8 1455 aa17.41■□□□□ 0.38
HDAC6-230ENST00000488543 IQGAP3Q86VI3 1631 aa17.4■□□□□ 0.38
HDAC6-230ENST00000488543 GGT6Q6P531 493 aa17.4■□□□□ 0.38
HDAC6-230ENST00000488543 PELP1Q8IZL8 1130 aaKnown RBP17.38■□□□□ 0.37
HDAC6-230ENST00000488543 DIP2CQ9Y2E4 1556 aa17.37■□□□□ 0.37
HDAC6-230ENST00000488543 L3MBTL2Q969R5 705 aa17.35■□□□□ 0.37
HDAC6-230ENST00000488543 DEPDC5O75140 1603 aa17.34■□□□□ 0.37
HDAC6-230ENST00000488543 ZMYM4Q5VZL5 1548 aa17.34■□□□□ 0.37
HDAC6-230ENST00000488543 MROH1Q8NDA8 1641 aa17.32■□□□□ 0.36
HDAC6-230ENST00000488543 EIF2AK4Q9P2K8 1649 aaKnown RBP17.31■□□□□ 0.36
HDAC6-230ENST00000488543 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
HDAC6-230ENST00000488543 ATP10AO60312 1499 aa17.3■□□□□ 0.36
HDAC6-230ENST00000488543 KANK1Q14678 1352 aa17.3■□□□□ 0.36
HDAC6-230ENST00000488543 PLA2R1Q13018 1463 aa17.29■□□□□ 0.36
HDAC6-230ENST00000488543 WASHC2CQ9Y4E1 1318 aa17.29■□□□□ 0.36
HDAC6-230ENST00000488543 VWDEQ8N2E2 1590 aa17.27■□□□□ 0.36
HDAC6-230ENST00000488543 MLECQ14165 292 aa17.27■□□□□ 0.36
HDAC6-230ENST00000488543 PRDM15P57071 1507 aaPredicted RBP17.27■□□□□ 0.36
HDAC6-230ENST00000488543 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
HDAC6-230ENST00000488543 E9PCH4 1651 aa17.25■□□□□ 0.35
HDAC6-230ENST00000488543 SIGLEC1Q9BZZ2 1709 aa17.24■□□□□ 0.35
HDAC6-230ENST00000488543 RNF17Q9BXT8 1623 aaKnown RBP17.24■□□□□ 0.35
HDAC6-230ENST00000488543 TET3O43151 1660 aa17.23■□□□□ 0.35
HDAC6-230ENST00000488543 RGL3Q3MIN7 710 aa17.22■□□□□ 0.35
HDAC6-230ENST00000488543 HIRIP3Q9BW71 556 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-230ENST00000488543 CCDC144AA2RUR9 1427 aa17.22■□□□□ 0.35
HDAC6-230ENST00000488543 CEP152O94986 1710 aa17.21■□□□□ 0.35
HDAC6-230ENST00000488543 ARID4BQ4LE39 1312 aaPredicted RBP17.21■□□□□ 0.35
HDAC6-230ENST00000488543 BCORL1Q5H9F3 1711 aa17.21■□□□□ 0.35
HDAC6-230ENST00000488543 ARHGEF40Q8TER5 1519 aa17.2■□□□□ 0.34
HDAC6-230ENST00000488543 UHRF1BP1Q6BDS2 1440 aa17.19■□□□□ 0.34
HDAC6-230ENST00000488543 CFAP65Q6ZU64 1925 aaKnown RBP17.19■□□□□ 0.34
HDAC6-230ENST00000488543 ABCC3O15438 1527 aa17.19■□□□□ 0.34
HDAC6-230ENST00000488543 KDM2AQ9Y2K7 1162 aa17.19■□□□□ 0.34
HDAC6-230ENST00000488543 SPHKAPQ2M3C7 1700 aa17.18■□□□□ 0.34
HDAC6-230ENST00000488543 NPATQ14207 1427 aa17.18■□□□□ 0.34
HDAC6-230ENST00000488543 EFCAB6Q5THR3 1501 aa17.17■□□□□ 0.34
HDAC6-230ENST00000488543 LMTK2Q8IWU2 1503 aa17.17■□□□□ 0.34
HDAC6-230ENST00000488543 PTPRTO14522 1441 aa17.16■□□□□ 0.34
HDAC6-230ENST00000488543 ZNF326Q5BKZ1 582 aaKnown RBP17.16■□□□□ 0.34
HDAC6-230ENST00000488543 REREQ9P2R6 1566 aa17.16■□□□□ 0.34
HDAC6-230ENST00000488543 DCAF11Q8TEB1 546 aa17.16■□□□□ 0.34
HDAC6-230ENST00000488543 AGLP35573 1532 aa17.16■□□□□ 0.34
HDAC6-230ENST00000488543 TRPM2O94759 1503 aa17.15■□□□□ 0.34
HDAC6-230ENST00000488543 HSPA5P11021 654 aaKnown RBP17.15■□□□□ 0.34
HDAC6-230ENST00000488543 UGGT1Q9NYU2 1555 aa17.14■□□□□ 0.34
HDAC6-230ENST00000488543 FBXO31Q5XUX0 539 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-230ENST00000488543 RALGAPBQ86X10 1494 aa17.13■□□□□ 0.33
HDAC6-230ENST00000488543 SPATA31E1Q6ZUB1 1445 aa17.12■□□□□ 0.33
HDAC6-230ENST00000488543 CLTCL1P53675 1640 aa17.12■□□□□ 0.33
HDAC6-230ENST00000488543 EIF4G2P78344 907 aaKnown RBP eCLIP17.12■□□□□ 0.33
HDAC6-230ENST00000488543 CAMSAP1Q5T5Y3 1602 aa17.11■□□□□ 0.33
HDAC6-230ENST00000488543 DDX10Q13206 875 aaKnown RBP17.1■□□□□ 0.33
HDAC6-230ENST00000488543 RTN4Q9NQC3 1192 aaKnown RBP17.09■□□□□ 0.33
HDAC6-230ENST00000488543 CHGAP10645 457 aaKnown RBP17.09■□□□□ 0.33
HDAC6-230ENST00000488543 PPP6R1Q9UPN7 881 aa17.09■□□□□ 0.33
HDAC6-230ENST00000488543 TRPM1Q7Z4N2 1603 aa17.08■□□□□ 0.32
HDAC6-230ENST00000488543 POLR1AO95602 1720 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-230ENST00000488543 ESF1Q9H501 851 aaKnown RBP17.08■□□□□ 0.32
HDAC6-230ENST00000488543 PRAG1Q86YV5 1406 aa17.07■□□□□ 0.32
HDAC6-230ENST00000488543 ARHGAP31Q2M1Z3 1444 aa17.07■□□□□ 0.32
HDAC6-230ENST00000488543 NOS1P29475 1434 aa17.06■□□□□ 0.32
HDAC6-230ENST00000488543 CLTCQ00610 1675 aaKnown RBP17.06■□□□□ 0.32
HDAC6-230ENST00000488543 IDI1Q13907 227 aa17.06■□□□□ 0.32
HDAC6-230ENST00000488543 ZC3H13Q5T200 1668 aaKnown RBP17.05■□□□□ 0.32
HDAC6-230ENST00000488543 WASHC2AQ641Q2 1341 aa17.05■□□□□ 0.32
HDAC6-230ENST00000488543 ZMYM3Q14202 1370 aa17.04■□□□□ 0.32
HDAC6-230ENST00000488543 NEURL4Q96JN8 1562 aa17.04■□□□□ 0.32
HDAC6-230ENST00000488543 CNTLNQ9NXG0 1405 aa17.04■□□□□ 0.32
HDAC6-230ENST00000488543 CEBPAP49715 358 aaPredicted RBP17.03■□□□□ 0.32
HDAC6-230ENST00000488543 DAXXQ9UER7 740 aaPredicted RBP17.03■□□□□ 0.32
HDAC6-230ENST00000488543 USP47Q96K76 1375 aa17.03■□□□□ 0.32
HDAC6-230ENST00000488543 SYNMO15061 1565 aa17.02■□□□□ 0.32
HDAC6-230ENST00000488543 C11orf95C9JLR9 678 aaPredicted RBP17.02■□□□□ 0.32
HDAC6-230ENST00000488543 KIF1BO60333 1816 aa17.01■□□□□ 0.31
HDAC6-230ENST00000488543 LAMC1P11047 1609 aa17■□□□□ 0.31
HDAC6-230ENST00000488543 CCDC7Q96M83 1385 aa17■□□□□ 0.31
HDAC6-230ENST00000488543 MADDQ8WXG6 1647 aa17■□□□□ 0.31
HDAC6-230ENST00000488543 NBPF1Q3BBV0 1214 aa17■□□□□ 0.31
HDAC6-230ENST00000488543 MROH2AA6NES4 1674 aa16.99■□□□□ 0.31
HDAC6-230ENST00000488543 NUTM2DQ5VT03 806 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms