RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	AFAP1	Q8N556	730 aa		14.21	□□□□□ -0.13
USP4-213	ENST00000488520	CDK11A	Q9UQ88	783 aa	Predicted RBP	14.21	□□□□□ -0.13
USP4-213	ENST00000488520	PREX2	Q70Z35	1606 aa		14.2	□□□□□ -0.14
USP4-213	ENST00000488520	SUPT6H	Q7KZ85	1726 aa	Known RBP	14.19	□□□□□ -0.14
USP4-213	ENST00000488520	TRO	Q12816	1431 aa	Predicted RBP	14.19	□□□□□ -0.14
USP4-213	ENST00000488520	MNX1	P50219	401 aa	Predicted RBP	14.19	□□□□□ -0.14
USP4-213	ENST00000488520	KIDINS220	Q9ULH0	1771 aa		14.19	□□□□□ -0.14
USP4-213	ENST00000488520	UHRF1BP1	Q6BDS2	1440 aa		14.18	□□□□□ -0.14
USP4-213	ENST00000488520	PLCD3	Q8N3E9	789 aa		14.18	□□□□□ -0.14
USP4-213	ENST00000488520	CLIP1	P30622	1438 aa		14.17	□□□□□ -0.14
USP4-213	ENST00000488520	RERE	Q9P2R6	1566 aa		14.16	□□□□□ -0.14
USP4-213	ENST00000488520	EVX2	Q03828	476 aa		14.15	□□□□□ -0.14
USP4-213	ENST00000488520	ABCC1	P33527	1531 aa		14.15	□□□□□ -0.14
USP4-213	ENST00000488520	SP7	Q8TDD2	431 aa	Predicted RBP	14.14	□□□□□ -0.15
USP4-213	ENST00000488520	DISP3	Q9P2K9	1392 aa		14.13	□□□□□ -0.15
USP4-213	ENST00000488520	CD44	P16070	742 aa	Known RBP	14.13	□□□□□ -0.15
USP4-213	ENST00000488520	ESF1	Q9H501	851 aa	Known RBP	14.13	□□□□□ -0.15
USP4-213	ENST00000488520	TRAPPC8	Q9Y2L5	1435 aa		14.13	□□□□□ -0.15
USP4-213	ENST00000488520	MLH3	Q9UHC1	1453 aa		14.12	□□□□□ -0.15
USP4-213	ENST00000488520	CLTC	Q00610	1675 aa	Known RBP	14.11	□□□□□ -0.15
USP4-213	ENST00000488520	ILDR2	Q71H61	639 aa		14.11	□□□□□ -0.15
USP4-213	ENST00000488520	MROH2A	A6NES4	1674 aa		14.1	□□□□□ -0.15
USP4-213	ENST00000488520	AGL	P35573	1532 aa		14.1	□□□□□ -0.15
USP4-213	ENST00000488520	VASP	P50552	380 aa	Predicted RBP	14.09	□□□□□ -0.15
USP4-213	ENST00000488520	SPATA31D1	Q6ZQQ2	1576 aa		14.09	□□□□□ -0.15
USP4-213	ENST00000488520	SAMD9L	Q8IVG5	1584 aa		14.08	□□□□□ -0.16
USP4-213	ENST00000488520	PTPRT	O14522	1441 aa		14.07	□□□□□ -0.16
USP4-213	ENST00000488520	CCDC18	Q5T9S5	1454 aa		14.07	□□□□□ -0.16
USP4-213	ENST00000488520	ZBTB47	Q9UFB7	747 aa	Predicted RBP	14.07	□□□□□ -0.16
USP4-213	ENST00000488520	ZNF777	Q9ULD5	760 aa	Predicted RBP	14.07	□□□□□ -0.16
USP4-213	ENST00000488520	CAMSAP1	Q5T5Y3	1602 aa		14.07	□□□□□ -0.16
USP4-213	ENST00000488520	LTBP4	Q8N2S1	1624 aa		14.07	□□□□□ -0.16
USP4-213	ENST00000488520	CASKIN1	Q8WXD9	1431 aa		14.06	□□□□□ -0.16
USP4-213	ENST00000488520	SYCP2	Q9BX26	1530 aa		14.05	□□□□□ -0.16
USP4-213	ENST00000488520	NCOA1	Q15788	1441 aa		14.03	□□□□□ -0.16
USP4-213	ENST00000488520	CNTLN	Q9NXG0	1405 aa		14.03	□□□□□ -0.16
USP4-213	ENST00000488520	MYO3A	Q8NEV4	1616 aa		14.03	□□□□□ -0.16
USP4-213	ENST00000488520	ZNF142	P52746	1687 aa	Predicted RBP	14.03	□□□□□ -0.16
USP4-213	ENST00000488520	PAK3	O75914	559 aa	Predicted RBP	14.02	□□□□□ -0.17
USP4-213	ENST00000488520	HNRNPM	P52272	730 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
USP4-213	ENST00000488520	ADGB	Q8N7X0	1667 aa		14.01	□□□□□ -0.17
USP4-213	ENST00000488520	SOCS7	O14512	581 aa		14.01	□□□□□ -0.17
USP4-213	ENST00000488520	ATP7A	Q04656	1500 aa		14	□□□□□ -0.17
USP4-213	ENST00000488520	FYCO1	Q9BQS8	1478 aa		14	□□□□□ -0.17
USP4-213	ENST00000488520	SPAG9	O60271	1321 aa	Known RBP	14	□□□□□ -0.17
USP4-213	ENST00000488520	NCKAP5L	Q9HCH0	1330 aa		14	□□□□□ -0.17
USP4-213	ENST00000488520	ZRANB1	Q9UGI0	708 aa		14	□□□□□ -0.17
USP4-213	ENST00000488520	INO80	Q9ULG1	1556 aa	Predicted RBP	14	□□□□□ -0.17
USP4-213	ENST00000488520	ZMYM3	Q14202	1370 aa		13.99	□□□□□ -0.17
USP4-213	ENST00000488520	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.99	□□□□□ -0.17
USP4-213	ENST00000488520	IQSEC2	Q5JU85	1478 aa		13.98	□□□□□ -0.17
USP4-213	ENST00000488520	POLR1A	O95602	1720 aa	Predicted RBP	13.98	□□□□□ -0.17
USP4-213	ENST00000488520	NPAT	Q14207	1427 aa		13.98	□□□□□ -0.17
USP4-213	ENST00000488520	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.97	□□□□□ -0.17
USP4-213	ENST00000488520	PLXNC1	O60486	1568 aa		13.96	□□□□□ -0.17
USP4-213	ENST00000488520	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.96	□□□□□ -0.17
USP4-213	ENST00000488520	CFAP65	Q6ZU64	1925 aa	Known RBP	13.96	□□□□□ -0.17
USP4-213	ENST00000488520	GGT6	Q6P531	493 aa		13.96	□□□□□ -0.17
USP4-213	ENST00000488520	A2M	P01023	1474 aa		13.95	□□□□□ -0.18
USP4-213	ENST00000488520	ZNF579	Q8NAF0	562 aa	Known RBP	13.94	□□□□□ -0.18
USP4-213	ENST00000488520	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.94	□□□□□ -0.18
USP4-213	ENST00000488520	UBAP1L	F5GYI3	381 aa		13.93	□□□□□ -0.18
USP4-213	ENST00000488520	PTPRK	Q15262	1439 aa		13.92	□□□□□ -0.18
USP4-213	ENST00000488520	DNMT1	P26358	1616 aa	Known RBP	13.92	□□□□□ -0.18
USP4-213	ENST00000488520	CCNB3	Q8WWL7	1395 aa		13.92	□□□□□ -0.18
USP4-213	ENST00000488520	PLEKHH2	Q8IVE3	1493 aa		13.92	□□□□□ -0.18
USP4-213	ENST00000488520	KLHL34	Q8N239	644 aa		13.91	□□□□□ -0.18
USP4-213	ENST00000488520	TIAM1	Q13009	1591 aa		13.91	□□□□□ -0.18
USP4-213	ENST00000488520	KIAA1107	Q9UPP5	1409 aa		13.9	□□□□□ -0.18
USP4-213	ENST00000488520	PKD2	Q13563	968 aa		13.9	□□□□□ -0.18
USP4-213	ENST00000488520	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.9	□□□□□ -0.18
USP4-213	ENST00000488520	PLA2R1	Q13018	1463 aa		13.9	□□□□□ -0.18
USP4-213	ENST00000488520	ZNF644	Q9H582	1327 aa	Predicted RBP	13.9	□□□□□ -0.19
USP4-213	ENST00000488520	TCOF1	Q13428	1488 aa	Known RBP	13.89	□□□□□ -0.19
USP4-213	ENST00000488520	MTUS2	Q5JR59	1369 aa		13.89	□□□□□ -0.19
USP4-213	ENST00000488520	GABBR2	O75899	941 aa		13.89	□□□□□ -0.19
USP4-213	ENST00000488520	NUBP1	P53384	320 aa		13.89	□□□□□ -0.19
USP4-213	ENST00000488520	RASEF	Q8IZ41	740 aa		13.89	□□□□□ -0.19
USP4-213	ENST00000488520	CLCN6	P51797	869 aa		13.88	□□□□□ -0.19
USP4-213	ENST00000488520	A2ML1	A8K2U0	1454 aa		13.86	□□□□□ -0.19
USP4-213	ENST00000488520	LOC105371045	A0A1W2PR82	267 aa		13.85	□□□□□ -0.19
USP4-213	ENST00000488520	EHBP1L1	Q8N3D4	1523 aa		13.85	□□□□□ -0.19
USP4-213	ENST00000488520	NEURL4	Q96JN8	1562 aa		13.84	□□□□□ -0.19
USP4-213	ENST00000488520	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.84	□□□□□ -0.19
USP4-213	ENST00000488520	MBD5	Q9P267	1494 aa		13.83	□□□□□ -0.2
USP4-213	ENST00000488520	PIP4K2B	P78356	416 aa		13.83	□□□□□ -0.2
USP4-213	ENST00000488520	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.83	□□□□□ -0.2
USP4-213	ENST00000488520	PHF12	Q96QT6	1004 aa		13.83	□□□□□ -0.2
USP4-213	ENST00000488520	STRCP1	A6NGW2	1772 aa		13.82	□□□□□ -0.2
USP4-213	ENST00000488520	KIF3B	O15066	747 aa		13.82	□□□□□ -0.2
USP4-213	ENST00000488520	CCDC61	Q9Y6R9	512 aa		13.82	□□□□□ -0.2
USP4-213	ENST00000488520	MED1	Q15648	1581 aa	Predicted RBP	13.81	□□□□□ -0.2
USP4-213	ENST00000488520	FAM212A	Q96EL1	285 aa		13.81	□□□□□ -0.2
USP4-213	ENST00000488520	DHX29	Q7Z478	1369 aa	Known RBP	13.81	□□□□□ -0.2
USP4-213	ENST00000488520	KDM5D	Q9BY66	1539 aa		13.8	□□□□□ -0.2
USP4-213	ENST00000488520	TNR	Q92752	1358 aa		13.8	□□□□□ -0.2
USP4-213	ENST00000488520	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.8	□□□□□ -0.2
USP4-213	ENST00000488520	CEP152	O94986	1710 aa		13.79	□□□□□ -0.2
USP4-213	ENST00000488520	HSPA1L	P34931	641 aa		13.79	□□□□□ -0.2
USP4-213	ENST00000488520	CAMSAP2	Q08AD1	1489 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms