RNA–Protein interactions for RNA: ENST00000486184.1

NUP50-216, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 821 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-216ENST00000486184 MLECQ14165 292 aa17.15■□□□□ 0.34
NUP50-216ENST00000486184 RNF17Q9BXT8 1623 aaKnown RBP17.14■□□□□ 0.33
NUP50-216ENST00000486184 KIF3BO15066 747 aa17.13■□□□□ 0.33
NUP50-216ENST00000486184 ADAMTSL3P82987 1691 aa17.13■□□□□ 0.33
NUP50-216ENST00000486184 ANKRD50Q9ULJ7 1429 aa17.13■□□□□ 0.33
NUP50-216ENST00000486184 MADDQ8WXG6 1647 aa17.12■□□□□ 0.33
NUP50-216ENST00000486184 RIMS1Q86UR5 1692 aaKnown RBP17.12■□□□□ 0.33
NUP50-216ENST00000486184 ESF1Q9H501 851 aaKnown RBP17.11■□□□□ 0.33
NUP50-216ENST00000486184 GGT6Q6P531 493 aa17.1■□□□□ 0.33
NUP50-216ENST00000486184 HFM1A2PYH4 1435 aa17.1■□□□□ 0.33
NUP50-216ENST00000486184 DEPDC5O75140 1603 aa17.1■□□□□ 0.33
NUP50-216ENST00000486184 CLTCQ00610 1675 aaKnown RBP17.1■□□□□ 0.33
NUP50-216ENST00000486184 ZC3H13Q5T200 1668 aaKnown RBP17.1■□□□□ 0.33
NUP50-216ENST00000486184 TRIM26Q12899 539 aaPredicted RBP17.08■□□□□ 0.32
NUP50-216ENST00000486184 CEP152O94986 1710 aa17.07■□□□□ 0.32
NUP50-216ENST00000486184 NAIPQ13075 1403 aa17.07■□□□□ 0.32
NUP50-216ENST00000486184 UNC13BO14795 1591 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 PRDM15P57071 1507 aaPredicted RBP17.06■□□□□ 0.32
NUP50-216ENST00000486184 FAM135AQ9P2D6 1515 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 KANK1Q14678 1352 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 MROH2AA6NES4 1674 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 MROH1Q8NDA8 1641 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 KDM5DQ9BY66 1539 aa17.06■□□□□ 0.32
NUP50-216ENST00000486184 CNTLNQ9NXG0 1405 aa17.04■□□□□ 0.32
NUP50-216ENST00000486184 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.323e-6■□□□□ 11.3
NUP50-216ENST00000486184 WASHC2CQ9Y4E1 1318 aa17.02■□□□□ 0.32
NUP50-216ENST00000486184 CAMSAP1Q5T5Y3 1602 aa17.02■□□□□ 0.31
NUP50-216ENST00000486184 SETD5Q9C0A6 1442 aa17.02■□□□□ 0.31
NUP50-216ENST00000486184 C3P01024 1663 aa17.01■□□□□ 0.31
NUP50-216ENST00000486184 KDM4FA0A1W2PPD8 638 aa17■□□□□ 0.31
NUP50-216ENST00000486184 ABCC3O15438 1527 aa17■□□□□ 0.31
NUP50-216ENST00000486184 IQGAP3Q86VI3 1631 aa16.99■□□□□ 0.31
NUP50-216ENST00000486184 PTPRMP28827 1452 aa16.98■□□□□ 0.31
NUP50-216ENST00000486184 VWDEQ8N2E2 1590 aa16.98■□□□□ 0.31
NUP50-216ENST00000486184 TET3O43151 1660 aa16.97■□□□□ 0.31
NUP50-216ENST00000486184 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
NUP50-216ENST00000486184 TRIM52Q96A61 297 aa16.97■□□□□ 0.31
NUP50-216ENST00000486184 CFAP65Q6ZU64 1925 aaKnown RBP16.97■□□□□ 0.31
NUP50-216ENST00000486184 NUP155O75694 1391 aa16.96■□□□□ 0.31
NUP50-216ENST00000486184 RAB3GAP2Q9H2M9 1393 aa16.95■□□□□ 0.3
NUP50-216ENST00000486184 LMTK2Q8IWU2 1503 aa16.95■□□□□ 0.3
NUP50-216ENST00000486184 EFCAB6Q5THR3 1501 aa16.94■□□□□ 0.3
NUP50-216ENST00000486184 ZMYM3Q14202 1370 aa16.93■□□□□ 0.3
NUP50-216ENST00000486184 E9PCH4 1651 aa16.91■□□□□ 0.3
NUP50-216ENST00000486184 PREX1Q8TCU6 1659 aa16.91■□□□□ 0.3
NUP50-216ENST00000486184 PZPP20742 1482 aa16.91■□□□□ 0.3
NUP50-216ENST00000486184 CEBPAP49715 358 aaPredicted RBP16.89■□□□□ 0.29
NUP50-216ENST00000486184 ARHGAP31Q2M1Z3 1444 aa16.88■□□□□ 0.29
NUP50-216ENST00000486184 SETD1BQ9UPS6 1966 aaKnown RBP16.88■□□□□ 0.29
NUP50-216ENST00000486184 PCGF6Q9BYE7 350 aa16.88■□□□□ 0.29
NUP50-216ENST00000486184 RPRD2Q5VT52 1461 aaKnown RBP16.87■□□□□ 0.29
NUP50-216ENST00000486184 NPATQ14207 1427 aa16.87■□□□□ 0.29
NUP50-216ENST00000486184 HRCP23327 699 aa16.86■□□□□ 0.29
NUP50-216ENST00000486184 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
NUP50-216ENST00000486184 SPHKAPQ2M3C7 1700 aa16.86■□□□□ 0.29
NUP50-216ENST00000486184 SPATA31D1Q6ZQQ2 1576 aa16.85■□□□□ 0.29
NUP50-216ENST00000486184 MYO3AQ8NEV4 1616 aa16.85■□□□□ 0.29
NUP50-216ENST00000486184 PPP4R3CPQ6ZMV5 832 aa16.84■□□□□ 0.29
NUP50-216ENST00000486184 ERVK-7P63135 1459 aa16.84■□□□□ 0.29
NUP50-216ENST00000486184 TNRQ92752 1358 aa16.82■□□□□ 0.28
NUP50-216ENST00000486184 SCAF1Q9H7N4 1312 aaKnown RBP16.82■□□□□ 0.28
NUP50-216ENST00000486184 FBXO31Q5XUX0 539 aaPredicted RBP16.81■□□□□ 0.28
NUP50-216ENST00000486184 ZNF142P52746 1687 aaPredicted RBP16.81■□□□□ 0.28
NUP50-216ENST00000486184 UHRF1BP1Q6BDS2 1440 aa16.8■□□□□ 0.28
NUP50-216ENST00000486184 PKD2Q13563 968 aa16.8■□□□□ 0.28
NUP50-216ENST00000486184 MPHOSPH9Q99550 1183 aa16.8■□□□□ 0.28
NUP50-216ENST00000486184 SYNMO15061 1565 aa16.79■□□□□ 0.28
NUP50-216ENST00000486184 CEP170BQ9Y4F5 1589 aaPredicted RBP16.77■□□□□ 0.28
NUP50-216ENST00000486184 NLRP1Q9C000 1473 aa16.77■□□□□ 0.28
NUP50-216ENST00000486184 NOS1P29475 1434 aa16.77■□□□□ 0.27
NUP50-216ENST00000486184 KIF1BO60333 1816 aa16.76■□□□□ 0.27
NUP50-216ENST00000486184 TRPM2O94759 1503 aa16.75■□□□□ 0.27
NUP50-216ENST00000486184 PIK3C2BO00750 1634 aa16.75■□□□□ 0.27
NUP50-216ENST00000486184 A2ML1A8K2U0 1454 aa16.73■□□□□ 0.27
NUP50-216ENST00000486184 KDM5AP29375 1690 aaKnown RBP16.73■□□□□ 0.27
NUP50-216ENST00000486184 UBR1Q8IWV7 1749 aa16.73■□□□□ 0.27
NUP50-216ENST00000486184 MYO5BQ9ULV0 1848 aa16.73■□□□□ 0.27
NUP50-216ENST00000486184 UGGT1Q9NYU2 1555 aa16.72■□□□□ 0.27
NUP50-216ENST00000486184 PTPRTO14522 1441 aa16.72■□□□□ 0.27
NUP50-216ENST00000486184 CLTCL1P53675 1640 aa16.72■□□□□ 0.27
NUP50-216ENST00000486184 SLC52A1Q9NWF4 448 aa16.72■□□□□ 0.27
NUP50-216ENST00000486184 STAG3Q9UJ98 1225 aa16.72■□□□□ 0.27
NUP50-216ENST00000486184 LMTK3Q96Q04 1460 aa16.71■□□□□ 0.27
NUP50-216ENST00000486184 ADGRB3O60242 1522 aa16.7■□□□□ 0.26
NUP50-216ENST00000486184 CCDC144AA2RUR9 1427 aa16.69■□□□□ 0.26
NUP50-216ENST00000486184 CHGAP10645 457 aaKnown RBP16.68■□□□□ 0.26
NUP50-216ENST00000486184 IDI1Q13907 227 aa16.67■□□□□ 0.26
NUP50-216ENST00000486184 POLR1AO95602 1720 aaPredicted RBP16.67■□□□□ 0.26
NUP50-216ENST00000486184 TMEM131LA2VDJ0 1609 aa16.67■□□□□ 0.26
NUP50-216ENST00000486184 PLA2R1Q13018 1463 aa16.66■□□□□ 0.26
NUP50-216ENST00000486184 DHX57Q6P158 1386 aaKnown RBP16.65■□□□□ 0.26
NUP50-216ENST00000486184 THEMISQ8N1K5 641 aaPredicted RBP16.65■□□□□ 0.26
NUP50-216ENST00000486184 ANKRD30BQ9BXX2 1392 aa16.63■□□□□ 0.25
NUP50-216ENST00000486184 HSPA2P54652 639 aa16.62■□□□□ 0.25
NUP50-216ENST00000486184 ZNF326Q5BKZ1 582 aaKnown RBP16.6■□□□□ 0.25
NUP50-216ENST00000486184 SLIT1O75093 1534 aa16.59■□□□□ 0.25
NUP50-216ENST00000486184 EID1Q9Y6B2 187 aa16.58■□□□□ 0.24
NUP50-216ENST00000486184 PPLO60437 1756 aa16.58■□□□□ 0.24
NUP50-216ENST00000486184 STRCQ7RTU9 1775 aa16.58■□□□□ 0.24
NUP50-216ENST00000486184 NEURL4Q96JN8 1562 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms