RNA–Protein interactions for RNA: ENST00000477888.1

SPTLC1-205, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 5

Gene SPTLC1, Length 359 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-205ENST00000477888 MIA2Q96PC5 1412 aa12.21□□□□□ -0.45
SPTLC1-205ENST00000477888 SYCP2Q9BX26 1530 aa12.21□□□□□ -0.46
SPTLC1-205ENST00000477888 GPATCH8Q9UKJ3 1502 aaKnown RBP12.21□□□□□ -0.46
SPTLC1-205ENST00000477888 CFDP1Q9UEE9 299 aaPredicted RBP12.19□□□□□ -0.46
SPTLC1-205ENST00000477888 PZPP20742 1482 aa12.19□□□□□ -0.46
SPTLC1-205ENST00000477888 FAM135BQ49AJ0 1406 aa12.19□□□□□ -0.46
SPTLC1-205ENST00000477888 DHX29Q7Z478 1369 aaKnown RBP12.18□□□□□ -0.46
SPTLC1-205ENST00000477888 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
SPTLC1-205ENST00000477888 NLRP1Q9C000 1473 aa12.17□□□□□ -0.46
SPTLC1-205ENST00000477888 KIF3BO15066 747 aa12.17□□□□□ -0.46
SPTLC1-205ENST00000477888 UPF1Q92900 1129 aaKnown RBP eCLIP12.17□□□□□ -0.46
SPTLC1-205ENST00000477888 INO80Q9ULG1 1556 aaPredicted RBP12.17□□□□□ -0.46
SPTLC1-205ENST00000477888 SRCAPQ6ZRS2 3230 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 FAM135AQ9P2D6 1515 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 WASHC2CQ9Y4E1 1318 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 PLEKHH2Q8IVE3 1493 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 DEPDC5O75140 1603 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 CASKIN1Q8WXD9 1431 aa12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 POLR1AO95602 1720 aaPredicted RBP12.16□□□□□ -0.46
SPTLC1-205ENST00000477888 CCDC18Q5T9S5 1454 aa12.15□□□□□ -0.46
SPTLC1-205ENST00000477888 UGGT1Q9NYU2 1555 aa12.15□□□□□ -0.46
SPTLC1-205ENST00000477888 RNF17Q9BXT8 1623 aaKnown RBP12.15□□□□□ -0.47
SPTLC1-205ENST00000477888 CDC42BPAQ5VT25 1732 aa12.14□□□□□ -0.47
SPTLC1-205ENST00000477888 LRRIQ1Q96JM4 1722 aa12.14□□□□□ -0.47
SPTLC1-205ENST00000477888 ZNF644Q9H582 1327 aaPredicted RBP12.13□□□□□ -0.47
SPTLC1-205ENST00000477888 RTEL1-TNFRSF6BF6WH68 1400 aa12.13□□□□□ -0.47
SPTLC1-205ENST00000477888 MBD5Q9P267 1494 aa12.13□□□□□ -0.47
SPTLC1-205ENST00000477888 STRCP1A6NGW2 1772 aa12.13□□□□□ -0.47
SPTLC1-205ENST00000477888 CCNB3Q8WWL7 1395 aa12.11□□□□□ -0.47
SPTLC1-205ENST00000477888 LTKP29376 864 aa12.11□□□□□ -0.47
SPTLC1-205ENST00000477888 IQGAP1P46940 1657 aa12.1□□□□□ -0.47
SPTLC1-205ENST00000477888 SYNMO15061 1565 aa12.1□□□□□ -0.47
SPTLC1-205ENST00000477888 KDM5DQ9BY66 1539 aa12.1□□□□□ -0.47
SPTLC1-205ENST00000477888 TXNDC2Q86VQ3 553 aa12.08□□□□□ -0.48
SPTLC1-205ENST00000477888 ADGBQ8N7X0 1667 aa12.07□□□□□ -0.48
SPTLC1-205ENST00000477888 TMEM94Q12767 1356 aa12.06□□□□□ -0.48
SPTLC1-205ENST00000477888 SCAF11Q99590 1463 aaKnown RBP12.05□□□□□ -0.48
SPTLC1-205ENST00000477888 JCADQ9P266 1359 aa12.05□□□□□ -0.48
SPTLC1-205ENST00000477888 SETD1AO15047 1707 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-205ENST00000477888 KCNA6P17658 529 aa12.04□□□□□ -0.48
SPTLC1-205ENST00000477888 TRIM52Q96A61 297 aa12.04□□□□□ -0.48
SPTLC1-205ENST00000477888 NCOA2Q15596 1464 aa12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 FYCO1Q9BQS8 1478 aa12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 ARHGAP23Q9P227 1491 aa12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 RSPH4AQ5TD94 716 aa12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 ZNF772Q68DY9 489 aaPredicted RBP12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 RBM33Q96EV2 1170 aaKnown RBP12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 ZC3H13Q5T200 1668 aaKnown RBP12.03□□□□□ -0.48
SPTLC1-205ENST00000477888 SLAIN2Q9P270 581 aa12.02□□□□□ -0.49
SPTLC1-205ENST00000477888 EID1Q9Y6B2 187 aa12.02□□□□□ -0.49
SPTLC1-205ENST00000477888 ERVK-7P63135 1459 aa12.02□□□□□ -0.49
SPTLC1-205ENST00000477888 PROSER2Q86WR7 435 aaPredicted RBP12.01□□□□□ -0.49
SPTLC1-205ENST00000477888 RXRBP28702 533 aa12□□□□□ -0.49
SPTLC1-205ENST00000477888 SLIT1O75093 1534 aa12□□□□□ -0.49
SPTLC1-205ENST00000477888 SPATA31A6Q5VVP1 1343 aa11.99□□□□□ -0.49
SPTLC1-205ENST00000477888 MTUS2Q5JR59 1369 aa11.99□□□□□ -0.49
SPTLC1-205ENST00000477888 ROBO1Q9Y6N7 1651 aa11.99□□□□□ -0.49
SPTLC1-205ENST00000477888 XIRP1Q702N8 1843 aaKnown RBP11.99□□□□□ -0.49
SPTLC1-205ENST00000477888 ABCC3O15438 1527 aa11.98□□□□□ -0.49
SPTLC1-205ENST00000477888 MAP3K1Q13233 1512 aa11.98□□□□□ -0.49
SPTLC1-205ENST00000477888 LRP6O75581 1613 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 CCDC141Q6ZP82 1450 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 LRRC9Q6ZRR7 1453 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 TMEM2Q9UHN6 1383 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 TSPY4P0CV99 314 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 TSPY10P0CW01 314 aa11.97□□□□□ -0.49
SPTLC1-205ENST00000477888 MEX3CQ5U5Q3 659 aaKnown RBP11.96□□□□□ -0.49
SPTLC1-205ENST00000477888 SLC26A8Q96RN1 970 aa11.96□□□□□ -0.49
SPTLC1-205ENST00000477888 PRDM15P57071 1507 aaPredicted RBP11.95□□□□□ -0.5
SPTLC1-205ENST00000477888 CDK12Q9NYV4 1490 aaPredicted RBP11.95□□□□□ -0.5
SPTLC1-205ENST00000477888 FGD6Q6ZV73 1430 aa11.94□□□□□ -0.5
SPTLC1-205ENST00000477888 MSH6P52701 1360 aa11.94□□□□□ -0.5
SPTLC1-205ENST00000477888 TIAM1Q13009 1591 aa11.94□□□□□ -0.5
SPTLC1-205ENST00000477888 UBR1Q8IWV7 1749 aa11.94□□□□□ -0.5
SPTLC1-205ENST00000477888 CEP162Q5TB80 1403 aa11.93□□□□□ -0.5
SPTLC1-205ENST00000477888 ARHGAP31Q2M1Z3 1444 aa11.92□□□□□ -0.5
SPTLC1-205ENST00000477888 TET3O43151 1660 aa11.91□□□□□ -0.5
SPTLC1-205ENST00000477888 IDI1Q13907 227 aa11.91□□□□□ -0.5
SPTLC1-205ENST00000477888 CAMSAP2Q08AD1 1489 aa11.9□□□□□ -0.5
SPTLC1-205ENST00000477888 STAG3Q9UJ98 1225 aa11.9□□□□□ -0.5
SPTLC1-205ENST00000477888 COL16A1Q07092 1604 aaPredicted RBP11.89□□□□□ -0.51
SPTLC1-205ENST00000477888 NKTRP30414 1462 aaKnown RBP11.89□□□□□ -0.51
SPTLC1-205ENST00000477888 PHLPP1O60346 1717 aa11.89□□□□□ -0.51
SPTLC1-205ENST00000477888 AFF2P51816 1311 aa11.88□□□□□ -0.51
SPTLC1-205ENST00000477888 MROH1Q8NDA8 1641 aa11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 NUTM2BA6NNL0 878 aaPredicted RBP11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 NUTM2EB1AL46 878 aaPredicted RBP11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 RBM6P78332 1123 aaKnown RBP11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 NUTM2AQ8IVF1 878 aaPredicted RBP11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 QTRT2Q9H974 415 aaKnown RBP11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 ZRANB1Q9UGI0 708 aa11.87□□□□□ -0.51
SPTLC1-205ENST00000477888 NCOA3Q9Y6Q9 1424 aa11.86□□□□□ -0.51
SPTLC1-205ENST00000477888 EHBP1L1Q8N3D4 1523 aa11.86□□□□□ -0.51
SPTLC1-205ENST00000477888 RGS12O14924 1447 aa11.86□□□□□ -0.51
SPTLC1-205ENST00000477888 ARHGEF5Q12774 1597 aa11.85□□□□□ -0.51
SPTLC1-205ENST00000477888 NWD1Q149M9 1564 aa11.85□□□□□ -0.51
SPTLC1-205ENST00000477888 NUTM2DQ5VT03 806 aaPredicted RBP11.85□□□□□ -0.51
SPTLC1-205ENST00000477888 CADPS2Q86UW7 1296 aa11.85□□□□□ -0.51
SPTLC1-205ENST00000477888 C19orf44Q9H6X5 657 aa11.84□□□□□ -0.51
SPTLC1-205ENST00000477888 EFCAB6Q5THR3 1501 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms