RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 ROCK1Q13464 1354 aa23.22■■□□□ 1.31
SEC13-215ENST00000477547 NCOA1Q15788 1441 aa23.21■■□□□ 1.31
SEC13-215ENST00000477547 SOCS7O14512 581 aa23.21■■□□□ 1.31
SEC13-215ENST00000477547 CEBPAP49715 358 aaPredicted RBP23.18■■□□□ 1.3
SEC13-215ENST00000477547 AGLP35573 1532 aa23.18■■□□□ 1.3
SEC13-215ENST00000477547 ERBINQ96RT1 1412 aa23.16■■□□□ 1.3
SEC13-215ENST00000477547 RNF17Q9BXT8 1623 aaKnown RBP23.16■■□□□ 1.3
SEC13-215ENST00000477547 PREX1Q8TCU6 1659 aa23.15■■□□□ 1.3
SEC13-215ENST00000477547 RRP7BPQ9NSQ0 103 aa23.14■■□□□ 1.3
SEC13-215ENST00000477547 STRCQ7RTU9 1775 aa23.13■■□□□ 1.29
SEC13-215ENST00000477547 HFM1A2PYH4 1435 aa23.13■■□□□ 1.29
SEC13-215ENST00000477547 DHX29Q7Z478 1369 aaKnown RBP23.13■■□□□ 1.29
SEC13-215ENST00000477547 DEPDC5O75140 1603 aa23.13■■□□□ 1.29
SEC13-215ENST00000477547 TRIM26Q12899 539 aaPredicted RBP23.11■■□□□ 1.29
SEC13-215ENST00000477547 NAIPQ13075 1403 aa23.11■■□□□ 1.29
SEC13-215ENST00000477547 ANKRD50Q9ULJ7 1429 aa23.1■■□□□ 1.29
SEC13-215ENST00000477547 UNC13BO14795 1591 aa23.1■■□□□ 1.29
SEC13-215ENST00000477547 MROH1Q8NDA8 1641 aa23.09■■□□□ 1.29
SEC13-215ENST00000477547 PRDM15P57071 1507 aaPredicted RBP23.07■■□□□ 1.28
SEC13-215ENST00000477547 DMRT2Q9Y5R5 561 aa23.07■■□□□ 1.28
SEC13-215ENST00000477547 CEP152O94986 1710 aa23.05■■□□□ 1.28
SEC13-215ENST00000477547 ZC3H13Q5T200 1668 aaKnown RBP23.05■■□□□ 1.28
SEC13-215ENST00000477547 SPATA31D1Q6ZQQ2 1576 aa23.05■■□□□ 1.28
SEC13-215ENST00000477547 UHRF1BP1Q6BDS2 1440 aa23.03■■□□□ 1.28
SEC13-215ENST00000477547 CLTCQ00610 1675 aaKnown RBP23.01■■□□□ 1.27
SEC13-215ENST00000477547 FAM135AQ9P2D6 1515 aa23.01■■□□□ 1.27
SEC13-215ENST00000477547 KIF3BO15066 747 aa23.01■■□□□ 1.27
SEC13-215ENST00000477547 KDM5DQ9BY66 1539 aa22.99■■□□□ 1.27
SEC13-215ENST00000477547 IQGAP3Q86VI3 1631 aa22.98■■□□□ 1.27
SEC13-215ENST00000477547 SETD5Q9C0A6 1442 aa22.98■■□□□ 1.27
SEC13-215ENST00000477547 SETD1BQ9UPS6 1966 aaKnown RBP22.98■■□□□ 1.27
SEC13-215ENST00000477547 MROH2AA6NES4 1674 aa22.98■■□□□ 1.27
SEC13-215ENST00000477547 CAMSAP1Q5T5Y3 1602 aa22.97■■□□□ 1.27
SEC13-215ENST00000477547 VWDEQ8N2E2 1590 aa22.96■■□□□ 1.27
SEC13-215ENST00000477547 PTPRTO14522 1441 aa22.95■■□□□ 1.27
SEC13-215ENST00000477547 ABCC3O15438 1527 aa22.95■■□□□ 1.26
SEC13-215ENST00000477547 RAB3GAP2Q9H2M9 1393 aa22.94■■□□□ 1.26
SEC13-215ENST00000477547 TET3O43151 1660 aa22.93■■□□□ 1.26
SEC13-215ENST00000477547 GGT6Q6P531 493 aa22.93■■□□□ 1.26
SEC13-215ENST00000477547 LTBP4Q8N2S1 1624 aa22.93■■□□□ 1.26
SEC13-215ENST00000477547 C3P01024 1663 aa22.93■■□□□ 1.26
SEC13-215ENST00000477547 KANK1Q14678 1352 aa22.9■■□□□ 1.26
SEC13-215ENST00000477547 EFCAB6Q5THR3 1501 aa22.89■■□□□ 1.25
SEC13-215ENST00000477547 CNTLNQ9NXG0 1405 aa22.88■■□□□ 1.25
SEC13-215ENST00000477547 LMTK2Q8IWU2 1503 aa22.88■■□□□ 1.25
SEC13-215ENST00000477547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.87■■□□□ 1.25
SEC13-215ENST00000477547 PCGF6Q9BYE7 350 aa22.86■■□□□ 1.25
SEC13-215ENST00000477547 E9PCH4 1651 aa22.85■■□□□ 1.25
SEC13-215ENST00000477547 NUP155O75694 1391 aa22.84■■□□□ 1.25
SEC13-215ENST00000477547 ESF1Q9H501 851 aaKnown RBP22.83■■□□□ 1.25
SEC13-215ENST00000477547 PZPP20742 1482 aa22.83■■□□□ 1.25
SEC13-215ENST00000477547 CFAP65Q6ZU64 1925 aaKnown RBP22.82■■□□□ 1.24
SEC13-215ENST00000477547 IQSEC2Q5JU85 1478 aa22.82■■□□□ 1.24
SEC13-215ENST00000477547 WASHC2CQ9Y4E1 1318 aa22.82■■□□□ 1.24
SEC13-215ENST00000477547 PPP6R1Q9UPN7 881 aa22.82■■□□□ 1.24
SEC13-215ENST00000477547 TRIM52Q96A61 297 aa22.8■■□□□ 1.24
SEC13-215ENST00000477547 SPHKAPQ2M3C7 1700 aa22.78■■□□□ 1.24
SEC13-215ENST00000477547 ACIN1Q9UKV3 1341 aaKnown RBP22.78■■□□□ 1.24
SEC13-215ENST00000477547 ZNF335Q9H4Z2 1342 aaPredicted RBP22.75■■□□□ 1.23
SEC13-215ENST00000477547 NCKAP5LQ9HCH0 1330 aa22.75■■□□□ 1.23
SEC13-215ENST00000477547 RPRD2Q5VT52 1461 aaKnown RBP22.75■■□□□ 1.23
SEC13-215ENST00000477547 UBAP1LF5GYI3 381 aa22.75■■□□□ 1.23
SEC13-215ENST00000477547 NPATQ14207 1427 aa22.75■■□□□ 1.23
SEC13-215ENST00000477547 ARHGAP31Q2M1Z3 1444 aa22.74■■□□□ 1.23
SEC13-215ENST00000477547 HRCP23327 699 aa22.73■■□□□ 1.23
SEC13-215ENST00000477547 ZMYM3Q14202 1370 aa22.73■■□□□ 1.23
SEC13-215ENST00000477547 ERVK-7P63135 1459 aa22.72■■□□□ 1.23
SEC13-215ENST00000477547 MYO3AQ8NEV4 1616 aa22.71■■□□□ 1.23
SEC13-215ENST00000477547 SYNMO15061 1565 aa22.68■■□□□ 1.22
SEC13-215ENST00000477547 SLC4A1APQ9BWU0 796 aaKnown RBP22.68■■□□□ 1.22
SEC13-215ENST00000477547 ZNF142P52746 1687 aaPredicted RBP22.66■■□□□ 1.22
SEC13-215ENST00000477547 TRPM2O94759 1503 aa22.66■■□□□ 1.22
SEC13-215ENST00000477547 MPHOSPH9Q99550 1183 aa22.64■■□□□ 1.22
SEC13-215ENST00000477547 PIK3C2BO00750 1634 aa22.64■■□□□ 1.21
SEC13-215ENST00000477547 NOS1P29475 1434 aa22.63■■□□□ 1.21
SEC13-215ENST00000477547 PKD2Q13563 968 aa22.62■■□□□ 1.21
SEC13-215ENST00000477547 CLTCL1P53675 1640 aa22.61■■□□□ 1.21
SEC13-215ENST00000477547 TNRQ92752 1358 aa22.61■■□□□ 1.21
SEC13-215ENST00000477547 UGGT1Q9NYU2 1555 aa22.61■■□□□ 1.21
SEC13-215ENST00000477547 DHX57Q6P158 1386 aaKnown RBP22.59■■□□□ 1.21
SEC13-215ENST00000477547 KIF1BO60333 1816 aa22.59■■□□□ 1.21
SEC13-215ENST00000477547 FBXO31Q5XUX0 539 aaPredicted RBP22.58■■□□□ 1.21
SEC13-215ENST00000477547 CEP170BQ9Y4F5 1589 aaPredicted RBP22.58■■□□□ 1.21
SEC13-215ENST00000477547 MYO5BQ9ULV0 1848 aa22.58■■□□□ 1.21
SEC13-215ENST00000477547 PLA2R1Q13018 1463 aa22.57■■□□□ 1.2
SEC13-215ENST00000477547 HSPA1LP34931 641 aa22.57■■□□□ 1.2
SEC13-215ENST00000477547 NLRP1Q9C000 1473 aa22.56■■□□□ 1.2
SEC13-215ENST00000477547 SCAF1Q9H7N4 1312 aaKnown RBP22.56■■□□□ 1.2
SEC13-215ENST00000477547 FOXD1Q16676 465 aa22.56■■□□□ 1.2
SEC13-215ENST00000477547 UBR1Q8IWV7 1749 aa22.55■■□□□ 1.2
SEC13-215ENST00000477547 KDM5AP29375 1690 aaKnown RBP22.55■■□□□ 1.2
SEC13-215ENST00000477547 MED1Q15648 1581 aaPredicted RBP22.54■■□□□ 1.2
SEC13-215ENST00000477547 ADGRB3O60242 1522 aa22.54■■□□□ 1.2
SEC13-215ENST00000477547 PIP4K2BP78356 416 aa22.54■■□□□ 1.2
SEC13-215ENST00000477547 A2ML1A8K2U0 1454 aa22.51■■□□□ 1.19
SEC13-215ENST00000477547 CCDC144AA2RUR9 1427 aa22.5■■□□□ 1.19
SEC13-215ENST00000477547 TMEM131LA2VDJ0 1609 aa22.49■■□□□ 1.19
SEC13-215ENST00000477547 ANKRD30BQ9BXX2 1392 aa22.48■■□□□ 1.19
SEC13-215ENST00000477547 POLR1AO95602 1720 aaPredicted RBP22.43■■□□□ 1.18
SEC13-215ENST00000477547 TOM1O60784 492 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms