RNA–Protein interactions for RNA: ENST00000475344.1

LTN1-204, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 3

Gene LTN1, Length 696 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-204ENST00000475344 P3H3Q8IVL6 736 aa12.27□□□□□ -0.45
LTN1-204ENST00000475344 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.45
LTN1-204ENST00000475344 MYT1LQ9UL68 1186 aa12.24□□□□□ -0.45
LTN1-204ENST00000475344 KDM2AQ9Y2K7 1162 aa12.24□□□□□ -0.45
LTN1-204ENST00000475344 MAP3K7O43318 606 aa12.23□□□□□ -0.45
LTN1-204ENST00000475344 TK2O00142 265 aa12.21□□□□□ -0.45
LTN1-204ENST00000475344 RNF166Q96A37 237 aaPredicted RBP12.21□□□□□ -0.45
LTN1-204ENST00000475344 STAC3Q96MF2 364 aa12.21□□□□□ -0.45
LTN1-204ENST00000475344 C6orf132Q5T0Z8 1188 aa12.2□□□□□ -0.46
LTN1-204ENST00000475344 VPS9D1Q9Y2B5 631 aa12.2□□□□□ -0.46
LTN1-204ENST00000475344 PPP1R3GB7ZBB8 358 aa12.19□□□□□ -0.46
LTN1-204ENST00000475344 COL9A1P20849 921 aa12.19□□□□□ -0.46
LTN1-204ENST00000475344 EN1Q05925 392 aaPredicted RBP12.19□□□□□ -0.46
LTN1-204ENST00000475344 TSR1Q2NL82 804 aaKnown RBP12.18□□□□□ -0.46
LTN1-204ENST00000475344 VSIG10Q8N0Z9 540 aa12.18□□□□□ -0.46
LTN1-204ENST00000475344 ZBED2Q9BTP6 218 aa12.18□□□□□ -0.46
LTN1-204ENST00000475344 MLLT3P42568 568 aaPredicted RBP12.17□□□□□ -0.46
LTN1-204ENST00000475344 PROX2Q3B8N5 592 aa12.16□□□□□ -0.46
LTN1-204ENST00000475344 HRO43593 1189 aa12.15□□□□□ -0.46
LTN1-204ENST00000475344 PRIM1P49642 420 aaKnown RBP12.15□□□□□ -0.46
LTN1-204ENST00000475344 OSBPP22059 807 aa12.14□□□□□ -0.47
LTN1-204ENST00000475344 SEMA3EO15041 775 aa12.13□□□□□ -0.47
LTN1-204ENST00000475344 SLC4A5Q9BY07 1137 aa12.12□□□□□ -0.47
LTN1-204ENST00000475344 CDHR5Q9HBB8 845 aa12.1□□□□□ -0.47
LTN1-204ENST00000475344 MRPL50Q8N5N7 158 aaKnown RBP12.08□□□□□ -0.48
LTN1-204ENST00000475344 NBPF3Q9H094 633 aa12.08□□□□□ -0.48
LTN1-204ENST00000475344 GOLGA8CPA6NN73 597 aa12.07□□□□□ -0.48
LTN1-204ENST00000475344 KCTD12Q96CX2 325 aaKnown RBP12.07□□□□□ -0.48
LTN1-204ENST00000475344 BHMG1C9JSJ3 638 aaPredicted RBP12.06□□□□□ -0.48
LTN1-204ENST00000475344 KIAA1468Q9P260 1216 aa12.06□□□□□ -0.48
LTN1-204ENST00000475344 RABGEF1Q9UJ41 708 aa12.06□□□□□ -0.48
LTN1-204ENST00000475344 TRIM6-TRIM34B2RNG4 842 aa12.05□□□□□ -0.48
LTN1-204ENST00000475344 CERKQ8TCT0 537 aa12.02□□□□□ -0.49
LTN1-204ENST00000475344 CDCA7LQ96GN5 454 aa12.02□□□□□ -0.49
LTN1-204ENST00000475344 SEPT9Q9UHD8 586 aaPredicted RBP12.02□□□□□ -0.49
LTN1-204ENST00000475344 TSKSQ9UJT2 592 aa12.02□□□□□ -0.49
LTN1-204ENST00000475344 NUTM2FA1L443 756 aa12.01□□□□□ -0.49
LTN1-204ENST00000475344 PRSS12P56730 875 aa12□□□□□ -0.49
LTN1-204ENST00000475344 PACS2Q86VP3 889 aa12□□□□□ -0.49
LTN1-204ENST00000475344 WNT2BQ93097 391 aa12□□□□□ -0.49
LTN1-204ENST00000475344 TESPA1A2RU30 521 aaPredicted RBP11.99□□□□□ -0.49
LTN1-204ENST00000475344 ONECUT3O60422 494 aaPredicted RBP11.99□□□□□ -0.49
LTN1-204ENST00000475344 SMYD5Q6GMV2 418 aa11.98□□□□□ -0.49
LTN1-204ENST00000475344 PTPN5P54829 565 aa11.97□□□□□ -0.49
LTN1-204ENST00000475344 SMAPO00193 183 aa11.96□□□□□ -0.49
LTN1-204ENST00000475344 RBM26Q5T8P6 1007 aaKnown RBP11.96□□□□□ -0.49
LTN1-204ENST00000475344 NPDC1Q9NQX5 325 aaPredicted RBP11.96□□□□□ -0.49
LTN1-204ENST00000475344 FAM198AQ9UFP1 575 aa11.96□□□□□ -0.49
LTN1-204ENST00000475344 PADI6Q6TGC4 694 aa11.95□□□□□ -0.5
LTN1-204ENST00000475344 HCSTQ9UBK5 93 aa11.95□□□□□ -0.5
LTN1-204ENST00000475344 LAPTM4BQ86VI4 370 aa11.94□□□□□ -0.5
LTN1-204ENST00000475344 PNMA3Q9UL41 463 aa11.94□□□□□ -0.5
LTN1-204ENST00000475344 ANKK1Q8NFD2 765 aa11.93□□□□□ -0.5
LTN1-204ENST00000475344 ZFRQ96KR1 1074 aaKnown RBP11.93□□□□□ -0.5
LTN1-204ENST00000475344 NBPF26B4DH59 902 aa11.92□□□□□ -0.5
LTN1-204ENST00000475344 THSD4Q6ZMP0 1018 aa11.92□□□□□ -0.5
LTN1-204ENST00000475344 PTGDRQ13258 359 aa11.91□□□□□ -0.5
LTN1-204ENST00000475344 FAM98CQ17RN3 349 aaKnown RBP11.91□□□□□ -0.5
LTN1-204ENST00000475344 TATDN2Q93075 761 aa11.91□□□□□ -0.5
LTN1-204ENST00000475344 C3orf80F5H4A9 247 aa11.9□□□□□ -0.5
LTN1-204ENST00000475344 BCAMP50895 628 aa11.9□□□□□ -0.5
LTN1-204ENST00000475344 NUDT18Q6ZVK8 323 aa11.9□□□□□ -0.5
LTN1-204ENST00000475344 RBM27Q9P2N5 1060 aaKnown RBP11.9□□□□□ -0.5
LTN1-204ENST00000475344 FCHSD2O94868 740 aa11.87□□□□□ -0.51
LTN1-204ENST00000475344 TULP1O00294 542 aaPredicted RBP11.86□□□□□ -0.51
LTN1-204ENST00000475344 LRCH3Q96II8 777 aa11.85□□□□□ -0.51
LTN1-204ENST00000475344 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.85□□□□□ -0.51
LTN1-204ENST00000475344 SOWAHBA6NEL2 793 aa11.84□□□□□ -0.51
LTN1-204ENST00000475344 TTC13Q8NBP0 860 aa11.84□□□□□ -0.51
LTN1-204ENST00000475344 RNF40O75150 1001 aa11.83□□□□□ -0.52
LTN1-204ENST00000475344 GPIHBP1Q8IV16 184 aa11.83□□□□□ -0.52
LTN1-204ENST00000475344 FAM161AQ3B820 660 aa11.82□□□□□ -0.52
LTN1-204ENST00000475344 SAMD7Q7Z3H4 446 aa11.82□□□□□ -0.52
LTN1-204ENST00000475344 HDGFP51858 240 aaKnown RBP11.81□□□□□ -0.52
LTN1-204ENST00000475344 HPS5Q9UPZ3 1129 aa11.8□□□□□ -0.52
LTN1-204ENST00000475344 HIC1Q14526 733 aa11.79□□□□□ -0.52
LTN1-204ENST00000475344 WBP1LQ9NX94 342 aa11.79□□□□□ -0.52
LTN1-204ENST00000475344 RBM46Q8TBY0 533 aaKnown RBP11.77□□□□□ -0.53
LTN1-204ENST00000475344 PLA2G2EQ9NZK7 142 aa11.77□□□□□ -0.53
LTN1-204ENST00000475344 GNPATO15228 680 aa11.76□□□□□ -0.53
LTN1-204ENST00000475344 FECHP22830 423 aa11.76□□□□□ -0.53
LTN1-204ENST00000475344 EYA1Q99502 592 aa11.76□□□□□ -0.53
LTN1-204ENST00000475344 TSR3Q9UJK0 312 aaKnown RBP11.76□□□□□ -0.53
LTN1-204ENST00000475344 ADGRG1Q9Y653 693 aa11.76□□□□□ -0.53
LTN1-204ENST00000475344 GPR37O15354 613 aa11.75□□□□□ -0.53
LTN1-204ENST00000475344 PPP4CP60510 307 aa11.75□□□□□ -0.53
LTN1-204ENST00000475344 SWT1Q5T5J6 900 aaKnown RBP11.75□□□□□ -0.53
LTN1-204ENST00000475344 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
LTN1-204ENST00000475344 DNAJB2P25686 324 aa11.71□□□□□ -0.53
LTN1-204ENST00000475344 RCCD1A6NED2 376 aa11.69□□□□□ -0.54
LTN1-204ENST00000475344 SLC4A3P48751 1232 aa11.69□□□□□ -0.54
LTN1-204ENST00000475344 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.69□□□□□ -0.54
LTN1-204ENST00000475344 OATP04181 439 aa11.68□□□□□ -0.54
LTN1-204ENST00000475344 LMOD2Q6P5Q4 547 aa11.68□□□□□ -0.54
LTN1-204ENST00000475344 SLF2Q8IX21 1173 aa11.68□□□□□ -0.54
LTN1-204ENST00000475344 NYAP1Q6ZVC0 841 aa11.67□□□□□ -0.54
LTN1-204ENST00000475344 PXYLP1Q8TE99 480 aa11.67□□□□□ -0.54
LTN1-204ENST00000475344 METTL3Q86U44 580 aaKnown RBP11.66□□□□□ -0.54
LTN1-204ENST00000475344 TMEM134Q9H6X4 195 aa11.65□□□□□ -0.54
LTN1-204ENST00000475344 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms