RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 URB2Q14146 1524 aaKnown RBP6.48□□□□□ -1.37
NPHP3-206ENST00000474871 NBPF1Q3BBV0 1214 aa6.48□□□□□ -1.37
NPHP3-206ENST00000474871 TSHZ1Q6ZSZ6 1077 aa6.48□□□□□ -1.37
NPHP3-206ENST00000474871 NEFMP07197 916 aa6.48□□□□□ -1.37
NPHP3-206ENST00000474871 BRPF1P55201 1214 aaPredicted RBP6.48□□□□□ -1.37
NPHP3-206ENST00000474871 IRX3P78415 501 aaPredicted RBP6.48□□□□□ -1.37
NPHP3-206ENST00000474871 PATL2C9JE40 543 aaKnown RBP6.48□□□□□ -1.37
NPHP3-206ENST00000474871 DCAF11Q8TEB1 546 aa6.48□□□□□ -1.37
NPHP3-206ENST00000474871 DDRGK1Q96HY6 314 aa6.48□□□□□ -1.37
NPHP3-206ENST00000474871 POLA1P09884 1462 aaPredicted RBP6.47□□□□□ -1.37
NPHP3-206ENST00000474871 ZNF526Q8TF50 670 aaPredicted RBP6.47□□□□□ -1.37
NPHP3-206ENST00000474871 MKL1Q969V6 931 aa6.47□□□□□ -1.37
NPHP3-206ENST00000474871 ABCA10Q8WWZ4 1543 aa6.47□□□□□ -1.37
NPHP3-206ENST00000474871 SMAP1Q8IYB5 467 aaPredicted RBP6.46□□□□□ -1.37
NPHP3-206ENST00000474871 ARHGEF1Q92888 912 aaKnown RBP6.46□□□□□ -1.37
NPHP3-206ENST00000474871 MAMSTRQ6ZN01 415 aa6.46□□□□□ -1.37
NPHP3-206ENST00000474871 RIPOR2Q9Y4F9 1068 aa6.46□□□□□ -1.37
NPHP3-206ENST00000474871 CCDC125Q86Z20 511 aa6.46□□□□□ -1.38
NPHP3-206ENST00000474871 EXOC8Q8IYI6 725 aa6.46□□□□□ -1.38
NPHP3-206ENST00000474871 DCAF8L1A6NGE4 600 aa6.46□□□□□ -1.38
NPHP3-206ENST00000474871 MIER1Q8N108 512 aa6.46□□□□□ -1.38
NPHP3-206ENST00000474871 BRD1O95696 1058 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 EP400NLQ6ZTU2 488 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 CHMP4CQ96CF2 233 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 MRC2Q9UBG0 1479 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 PPP4R3BQ5MIZ7 849 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 RAD54L2Q9Y4B4 1467 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 DMTNQ08495 405 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 AXDND1Q5T1B0 1012 aaPredicted RBP6.45□□□□□ -1.38
NPHP3-206ENST00000474871 IGSF5Q9NSI5 407 aa6.45□□□□□ -1.38
NPHP3-206ENST00000474871 TTC36A6NLP5 189 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 ABCA5Q8WWZ7 1642 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.44□□□□□ -1.38
NPHP3-206ENST00000474871 HNRNPUL2Q1KMD3 747 aaKnown RBP6.44□□□□□ -1.38
NPHP3-206ENST00000474871 SDR16C5Q8N3Y7 309 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 PDCL3Q9H2J4 239 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 USP35Q9P2H5 1018 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 CLIP1P30622 1438 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 RINLQ6ZS11 566 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 CEP120Q8N960 986 aa6.44□□□□□ -1.38
NPHP3-206ENST00000474871 FAM50AQ14320 339 aaKnown RBP6.44□□□□□ -1.38
NPHP3-206ENST00000474871 CUL7Q14999 1698 aa6.43□□□□□ -1.38
NPHP3-206ENST00000474871 YY1AP1Q9H869 796 aa6.43□□□□□ -1.38
NPHP3-206ENST00000474871 STK26Q9P289 416 aa6.43□□□□□ -1.38
NPHP3-206ENST00000474871 TESPA1A2RU30 521 aaPredicted RBP6.43□□□□□ -1.38
NPHP3-206ENST00000474871 MKRN4PQ13434 485 aaPredicted RBP6.43□□□□□ -1.38
NPHP3-206ENST00000474871 ANKRD23Q86SG2 305 aa6.42□□□□□ -1.38
NPHP3-206ENST00000474871 TARBP1Q13395 1621 aaKnown RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 ZSCAN20P17040 1043 aaPredicted RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 NBPF10Q6P3W6 841 aaKnown RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 OTUD6BQ8N6M0 293 aa6.42□□□□□ -1.38
NPHP3-206ENST00000474871 GEMIN8Q9NWZ8 242 aaKnown RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 FOXD4L6Q3SYB3 417 aaPredicted RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 FOXD4L3Q6VB84 417 aaPredicted RBP6.42□□□□□ -1.38
NPHP3-206ENST00000474871 HSP90AB4PQ58FF6 505 aa6.41□□□□□ -1.38
NPHP3-206ENST00000474871 ARAP1Q96P48 1450 aa6.41□□□□□ -1.38
NPHP3-206ENST00000474871 WDR62O43379 1518 aa6.41□□□□□ -1.38
NPHP3-206ENST00000474871 CCER1Q8TC90 406 aaPredicted RBP6.41□□□□□ -1.38
NPHP3-206ENST00000474871 VPS8Q8N3P4 1428 aa6.41□□□□□ -1.38
NPHP3-206ENST00000474871 C1QTNF12Q5T7M4 302 aa6.4□□□□□ -1.38
NPHP3-206ENST00000474871 ATXN8OSP0DMR3 200 aa6.4□□□□□ -1.38
NPHP3-206ENST00000474871 MYBPC2Q14324 1141 aa6.4□□□□□ -1.38
NPHP3-206ENST00000474871 FAM9BQ8IZU0 186 aa6.4□□□□□ -1.38
NPHP3-206ENST00000474871 RNF217Q8TC41 542 aa6.4□□□□□ -1.39
NPHP3-206ENST00000474871 CARMIL1Q5VZK9 1371 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 SPTY2D1Q68D10 685 aaPredicted RBP6.39□□□□□ -1.39
NPHP3-206ENST00000474871 PBRM1Q86U86 1689 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 ZHX1Q9UKY1 873 aaPredicted RBP6.39□□□□□ -1.39
NPHP3-206ENST00000474871 CTTNBP2Q8WZ74 1663 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 FAM163BP0C2L3 166 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 NBR1Q14596 966 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 NOP58Q9Y2X3 529 aaKnown RBP6.39□□□□□ -1.39
NPHP3-206ENST00000474871 ZBTB7CA1YPR0 619 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 P3H3Q8IVL6 736 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 SIRT1Q96EB6 747 aa6.39□□□□□ -1.39
NPHP3-206ENST00000474871 NBPF9Q3BBW0 867 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 TSPAN18Q96SJ8 248 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 THOC2Q8NI27 1593 aaKnown RBP6.38□□□□□ -1.39
NPHP3-206ENST00000474871 KCTD17Q8N5Z5 321 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 MTA1Q13330 715 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 RAD21O60216 631 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 CAPN2P17655 700 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 CCDC184Q52MB2 194 aa6.38□□□□□ -1.39
NPHP3-206ENST00000474871 DDX46Q7L014 1031 aaKnown RBP6.38□□□□□ -1.39
NPHP3-206ENST00000474871 YTHDC1Q96MU7 727 aaKnown RBP6.38□□□□□ -1.39
NPHP3-206ENST00000474871 ARHGAP35Q9NRY4 1499 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 ZNF500O60304 480 aaPredicted RBP6.37□□□□□ -1.39
NPHP3-206ENST00000474871 MLECQ14165 292 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 OSCARQ8IYS5 282 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 GAPVD1Q14C86 1478 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 ZC3H4Q9UPT8 1303 aaKnown RBP6.37□□□□□ -1.39
NPHP3-206ENST00000474871 SLX1AQ9BQ83 275 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 SUGT1Q9Y2Z0 365 aa6.37□□□□□ -1.39
NPHP3-206ENST00000474871 SCP2P22307 547 aa6.36□□□□□ -1.39
NPHP3-206ENST00000474871 RBM25P49756 843 aaKnown RBP6.36□□□□□ -1.39
NPHP3-206ENST00000474871 INHBEP58166 350 aa6.36□□□□□ -1.39
NPHP3-206ENST00000474871 HSP90AA1P07900 732 aaKnown RBP6.36□□□□□ -1.39
NPHP3-206ENST00000474871 SPINK5Q9NQ38 1064 aaPredicted RBP6.36□□□□□ -1.39
NPHP3-206ENST00000474871 ZC3H12AQ5D1E8 599 aaKnown RBP6.35□□□□□ -1.39
NPHP3-206ENST00000474871 CFAP65Q6ZU64 1925 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms