RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 CDK12Q9NYV4 1490 aaPredicted RBP8.77□□□□□ -1.01
SMARCE1-208ENST00000474246 ZNF772Q68DY9 489 aaPredicted RBP8.77□□□□□ -1.01
SMARCE1-208ENST00000474246 TTC37Q6PGP7 1564 aa8.76□□□□□ -1.01
SMARCE1-208ENST00000474246 PITPNM1O00562 1244 aa8.76□□□□□ -1.01
SMARCE1-208ENST00000474246 ZBTB47Q9UFB7 747 aaPredicted RBP8.76□□□□□ -1.01
SMARCE1-208ENST00000474246 ECM2O94769 699 aaPredicted RBP8.75□□□□□ -1.01
SMARCE1-208ENST00000474246 RSPH6AQ9H0K4 717 aa8.75□□□□□ -1.01
SMARCE1-208ENST00000474246 CIZ1Q9ULV3 898 aaPredicted RBP8.75□□□□□ -1.01
SMARCE1-208ENST00000474246 CUX1P39880 1505 aa8.74□□□□□ -1.01
SMARCE1-208ENST00000474246 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.74□□□□□ -1.01
SMARCE1-208ENST00000474246 TICAM2Q86XR7 235 aa8.74□□□□□ -1.01
SMARCE1-208ENST00000474246 PHLDB1Q86UU1 1377 aa8.74□□□□□ -1.01
SMARCE1-208ENST00000474246 PBRM1Q86U86 1689 aa8.74□□□□□ -1.01
SMARCE1-208ENST00000474246 CPS1P31327 1500 aa8.73□□□□□ -1.01
SMARCE1-208ENST00000474246 RXRBP28702 533 aa8.73□□□□□ -1.01
SMARCE1-208ENST00000474246 CREBZFQ9NS37 354 aa8.73□□□□□ -1.01
SMARCE1-208ENST00000474246 CLSTN1O94985 981 aa8.72□□□□□ -1.01
SMARCE1-208ENST00000474246 ZMYND15Q9H091 742 aa8.72□□□□□ -1.01
SMARCE1-208ENST00000474246 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.72□□□□□ -1.01
SMARCE1-208ENST00000474246 CD109Q6YHK3 1445 aa8.72□□□□□ -1.01
SMARCE1-208ENST00000474246 FANCAO15360 1455 aa8.72□□□□□ -1.01
SMARCE1-208ENST00000474246 RAPGEF6Q8TEU7 1601 aa8.71□□□□□ -1.01
SMARCE1-208ENST00000474246 SRCAPQ6ZRS2 3230 aa8.71□□□□□ -1.02
SMARCE1-208ENST00000474246 ZEB1P37275 1124 aaPredicted RBP8.7□□□□□ -1.02
SMARCE1-208ENST00000474246 ZNF784Q8NCA9 323 aaPredicted RBP8.69□□□□□ -1.02
SMARCE1-208ENST00000474246 SETD1BQ9UPS6 1966 aaKnown RBP8.69□□□□□ -1.02
SMARCE1-208ENST00000474246 BRPF1P55201 1214 aaPredicted RBP8.69□□□□□ -1.02
SMARCE1-208ENST00000474246 NAP1L5Q96NT1 182 aaPredicted RBP8.69□□□□□ -1.02
SMARCE1-208ENST00000474246 RGL2O15211 777 aa8.68□□□□□ -1.02
SMARCE1-208ENST00000474246 RAD21O60216 631 aa8.68□□□□□ -1.02
SMARCE1-208ENST00000474246 CCDC125Q86Z20 511 aa8.68□□□□□ -1.02
SMARCE1-208ENST00000474246 KCTD17Q8N5Z5 321 aa8.68□□□□□ -1.02
SMARCE1-208ENST00000474246 CCDC136Q96JN2 1154 aa8.67□□□□□ -1.02
SMARCE1-208ENST00000474246 PSMD1Q99460 953 aa8.67□□□□□ -1.02
SMARCE1-208ENST00000474246 PLSCR2Q9NRY7 297 aa8.67□□□□□ -1.02
SMARCE1-208ENST00000474246 RAPGEF3O95398 923 aa8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 MNX1P50219 401 aaPredicted RBP8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 NUBP1P53384 320 aa8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 SPRYD3Q8NCJ5 442 aa8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 LRRC7Q96NW7 1537 aa8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 PTPRGP23470 1445 aa8.66□□□□□ -1.02
SMARCE1-208ENST00000474246 ZNF592Q92610 1267 aa8.65□□□□□ -1.02
SMARCE1-208ENST00000474246 ATAD2Q6PL18 1390 aa8.65□□□□□ -1.02
SMARCE1-208ENST00000474246 AAMPQ13685 434 aa8.65□□□□□ -1.03
SMARCE1-208ENST00000474246 RGS22Q8NE09 1264 aa8.65□□□□□ -1.03
SMARCE1-208ENST00000474246 FER1L4A9Z1Z3 1794 aa8.64□□□□□ -1.03
SMARCE1-208ENST00000474246 UHRF1BP1LA0JNW5 1464 aa8.64□□□□□ -1.03
SMARCE1-208ENST00000474246 CHADLQ6NUI6 762 aa8.64□□□□□ -1.03
SMARCE1-208ENST00000474246 NHSL1Q5SYE7 1610 aa8.64□□□□□ -1.03
SMARCE1-208ENST00000474246 ANO8Q9HCE9 1232 aaPredicted RBP8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 NUTM2BA6NNL0 878 aaPredicted RBP8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 NUTM2EB1AL46 878 aaPredicted RBP8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 DCAF8Q5TAQ9 597 aa8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 NUTM2DQ5VT03 806 aaPredicted RBP8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 NUTM2AQ8IVF1 878 aaPredicted RBP8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 C1orf115Q9H7X2 142 aa8.63□□□□□ -1.03
SMARCE1-208ENST00000474246 BRPF3Q9ULD4 1205 aa8.62□□□□□ -1.03
SMARCE1-208ENST00000474246 FHAD1B1AJZ9 1412 aa8.62□□□□□ -1.03
SMARCE1-208ENST00000474246 CUL7Q14999 1698 aa8.62□□□□□ -1.03
SMARCE1-208ENST00000474246 CEBPAP49715 358 aaPredicted RBP8.62□□□□□ -1.03
SMARCE1-208ENST00000474246 NCKAP5LQ9HCH0 1330 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 CC2D2BQ6DHV5 1058 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 TNS4Q8IZW8 715 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 ZFP91Q96JP5 570 aaPredicted RBP8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 FGD5Q6ZNL6 1462 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 ADAMTS12P58397 1594 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 AKNAQ7Z591 1439 aa8.61□□□□□ -1.03
SMARCE1-208ENST00000474246 HAX1O00165 279 aa8.6□□□□□ -1.03
SMARCE1-208ENST00000474246 GSE1Q14687 1217 aa8.6□□□□□ -1.03
SMARCE1-208ENST00000474246 ALKQ9UM73 1620 aa8.6□□□□□ -1.03
SMARCE1-208ENST00000474246 RASEFQ8IZ41 740 aa8.6□□□□□ -1.03
SMARCE1-208ENST00000474246 WDR7Q9Y4E6 1490 aa8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 ARHGEF40Q8TER5 1519 aa8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 MLECQ14165 292 aa8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 RBM25P49756 843 aaKnown RBP8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 CERS3Q8IU89 383 aa8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 MTMR7Q9Y216 660 aa8.59□□□□□ -1.03
SMARCE1-208ENST00000474246 CLSPNQ9HAW4 1339 aa8.59□□□□□ -1.04
SMARCE1-208ENST00000474246 CAMSAP1Q5T5Y3 1602 aa8.58□□□□□ -1.04
SMARCE1-208ENST00000474246 IRX6P78412 446 aaPredicted RBP8.58□□□□□ -1.04
SMARCE1-208ENST00000474246 FAM212AQ96EL1 285 aa8.58□□□□□ -1.04
SMARCE1-208ENST00000474246 A0A0U1RQG5 324 aaPredicted RBP8.57□□□□□ -1.04
SMARCE1-208ENST00000474246 GIGYF1O75420 1035 aaPredicted RBP8.57□□□□□ -1.04
SMARCE1-208ENST00000474246 EVX2Q03828 476 aa8.57□□□□□ -1.04
SMARCE1-208ENST00000474246 FAM177A1Q8N128 213 aaPredicted RBP8.57□□□□□ -1.04
SMARCE1-208ENST00000474246 PIP4P2Q8N4L2 257 aa8.57□□□□□ -1.04
SMARCE1-208ENST00000474246 MEX3CQ5U5Q3 659 aaKnown RBP8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 CWC22Q9HCG8 908 aaKnown RBP8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 KDM5BQ9UGL1 1544 aa8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 SHANK2Q9UPX8 1470 aa8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 NCLP19338 710 aaKnown RBP8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 ANP32EQ9BTT0 268 aa8.56□□□□□ -1.04
SMARCE1-208ENST00000474246 ZNF428Q96B54 188 aa8.55□□□□□ -1.04
SMARCE1-208ENST00000474246 RNF25Q96BH1 459 aaPredicted RBP8.55□□□□□ -1.04
SMARCE1-208ENST00000474246 USP35Q9P2H5 1018 aa8.55□□□□□ -1.04
SMARCE1-208ENST00000474246 TRAPPC8Q9Y2L5 1435 aa8.55□□□□□ -1.04
SMARCE1-208ENST00000474246 PRKAR2AP13861 404 aaKnown RBP8.54□□□□□ -1.04
SMARCE1-208ENST00000474246 ARHGEF12Q9NZN5 1544 aa8.54□□□□□ -1.04
SMARCE1-208ENST00000474246 PLA2R1Q13018 1463 aa8.54□□□□□ -1.04
SMARCE1-208ENST00000474246 CHGAP10645 457 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms