RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 DDX12PQ92771 950 aa13.29□□□□□ -0.28
CD46-213ENST00000471987 ZBED2Q9BTP6 218 aa13.28□□□□□ -0.28
CD46-213ENST00000471987 PPP1R3GB7ZBB8 358 aa13.26□□□□□ -0.29
CD46-213ENST00000471987 PLCB2Q00722 1185 aa13.26□□□□□ -0.29
CD46-213ENST00000471987 NBR1Q14596 966 aa13.22□□□□□ -0.29
CD46-213ENST00000471987 C6orf132Q5T0Z8 1188 aa13.22□□□□□ -0.29
CD46-213ENST00000471987 COL9A1P20849 921 aa13.2□□□□□ -0.3
CD46-213ENST00000471987 RBM33Q96EV2 1170 aaKnown RBP13.2□□□□□ -0.3
CD46-213ENST00000471987 BHMG1C9JSJ3 638 aaPredicted RBP13.19□□□□□ -0.3
CD46-213ENST00000471987 EN1Q05925 392 aaPredicted RBP13.18□□□□□ -0.3
CD46-213ENST00000471987 NBPF3Q9H094 633 aa13.18□□□□□ -0.3
CD46-213ENST00000471987 HCSTQ9UBK5 93 aa13.17□□□□□ -0.3
CD46-213ENST00000471987 GRXCR2A6NFK2 248 aa13.16□□□□□ -0.3
CD46-213ENST00000471987 MAP3K7O43318 606 aa13.16□□□□□ -0.3
CD46-213ENST00000471987 MRPL50Q8N5N7 158 aaKnown RBP13.16□□□□□ -0.3
CD46-213ENST00000471987 ARHGEF1Q92888 912 aaKnown RBP13.16□□□□□ -0.3
CD46-213ENST00000471987 KCTD12Q96CX2 325 aaKnown RBP13.16□□□□□ -0.3
CD46-213ENST00000471987 PROX2Q3B8N5 592 aa13.15□□□□□ -0.3
CD46-213ENST00000471987 RABGEF1Q9UJ41 708 aa13.15□□□□□ -0.3
CD46-213ENST00000471987 KCNV2Q8TDN2 545 aa13.14□□□□□ -0.31
CD46-213ENST00000471987 GOLGA8CPA6NN73 597 aa13.13□□□□□ -0.31
CD46-213ENST00000471987 ONECUT3O60422 494 aaPredicted RBP13.11□□□□□ -0.31
CD46-213ENST00000471987 TSR1Q2NL82 804 aaKnown RBP13.11□□□□□ -0.31
CD46-213ENST00000471987 P3H3Q8IVL6 736 aa13.11□□□□□ -0.31
CD46-213ENST00000471987 OSBPP22059 807 aa13.08□□□□□ -0.32
CD46-213ENST00000471987 KIAA1468Q9P260 1216 aa13.08□□□□□ -0.32
CD46-213ENST00000471987 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
CD46-213ENST00000471987 LAPTM4BQ86VI4 370 aa13.06□□□□□ -0.32
CD46-213ENST00000471987 CERKQ8TCT0 537 aa13.06□□□□□ -0.32
CD46-213ENST00000471987 WNT2BQ93097 391 aa13.06□□□□□ -0.32
CD46-213ENST00000471987 PRIM1P49642 420 aaKnown RBP13.05□□□□□ -0.32
CD46-213ENST00000471987 HAP1P54257 671 aaPredicted RBP13.05□□□□□ -0.32
CD46-213ENST00000471987 THSD4Q6ZMP0 1018 aa13.04□□□□□ -0.32
CD46-213ENST00000471987 PTPN5P54829 565 aa13.02□□□□□ -0.33
CD46-213ENST00000471987 PACS2Q86VP3 889 aa13.01□□□□□ -0.33
CD46-213ENST00000471987 ANKK1Q8NFD2 765 aa13.01□□□□□ -0.33
CD46-213ENST00000471987 PRSS12P56730 875 aa13□□□□□ -0.33
CD46-213ENST00000471987 CDCA7LQ96GN5 454 aa13□□□□□ -0.33
CD46-213ENST00000471987 SEPT9Q9UHD8 586 aaPredicted RBP12.99□□□□□ -0.33
CD46-213ENST00000471987 TSKSQ9UJT2 592 aa12.99□□□□□ -0.33
CD46-213ENST00000471987 MLLT3P42568 568 aaPredicted RBP12.98□□□□□ -0.33
CD46-213ENST00000471987 FAM98CQ17RN3 349 aaKnown RBP12.98□□□□□ -0.33
CD46-213ENST00000471987 ZFRQ96KR1 1074 aaKnown RBP12.98□□□□□ -0.33
CD46-213ENST00000471987 CDHR5Q9HBB8 845 aa12.98□□□□□ -0.33
CD46-213ENST00000471987 PLA2G2EQ9NZK7 142 aa12.95□□□□□ -0.34
CD46-213ENST00000471987 RBM27Q9P2N5 1060 aaKnown RBP12.95□□□□□ -0.34
CD46-213ENST00000471987 SOWAHBA6NEL2 793 aa12.92□□□□□ -0.34
CD46-213ENST00000471987 NBPF26B4DH59 902 aa12.91□□□□□ -0.34
CD46-213ENST00000471987 SEMA3EO15041 775 aa12.91□□□□□ -0.34
CD46-213ENST00000471987 FAM198AQ9UFP1 575 aa12.91□□□□□ -0.34
CD46-213ENST00000471987 BCAMP50895 628 aa12.9□□□□□ -0.34
CD46-213ENST00000471987 NPDC1Q9NQX5 325 aaPredicted RBP12.9□□□□□ -0.34
CD46-213ENST00000471987 TATDN2Q93075 761 aa12.88□□□□□ -0.35
CD46-213ENST00000471987 LRCH3Q96II8 777 aa12.88□□□□□ -0.35
CD46-213ENST00000471987 PNMA3Q9UL41 463 aa12.88□□□□□ -0.35
CD46-213ENST00000471987 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.87□□□□□ -0.35
CD46-213ENST00000471987 KDM2AQ9Y2K7 1162 aa12.87□□□□□ -0.35
CD46-213ENST00000471987 SMAPO00193 183 aa12.86□□□□□ -0.35
CD46-213ENST00000471987 PADI6Q6TGC4 694 aa12.85□□□□□ -0.35
CD46-213ENST00000471987 NYAP1Q6ZVC0 841 aa12.85□□□□□ -0.35
CD46-213ENST00000471987 TTC13Q8NBP0 860 aa12.85□□□□□ -0.35
CD46-213ENST00000471987 NUDT18Q6ZVK8 323 aa12.84□□□□□ -0.35
CD46-213ENST00000471987 VSIG10Q8N0Z9 540 aa12.84□□□□□ -0.35
CD46-213ENST00000471987 C3orf80F5H4A9 247 aa12.83□□□□□ -0.36
CD46-213ENST00000471987 NUTM2FA1L443 756 aa12.82□□□□□ -0.36
CD46-213ENST00000471987 TESPA1A2RU30 521 aaPredicted RBP12.82□□□□□ -0.36
CD46-213ENST00000471987 PTGDRQ13258 359 aa12.82□□□□□ -0.36
CD46-213ENST00000471987 SMYD5Q6GMV2 418 aa12.82□□□□□ -0.36
CD46-213ENST00000471987 WBP1LQ9NX94 342 aa12.82□□□□□ -0.36
CD46-213ENST00000471987 TSR3Q9UJK0 312 aaKnown RBP12.82□□□□□ -0.36
CD46-213ENST00000471987 HPS5Q9UPZ3 1129 aa12.81□□□□□ -0.36
CD46-213ENST00000471987 SAMD7Q7Z3H4 446 aa12.8□□□□□ -0.36
CD46-213ENST00000471987 HDGFP51858 240 aaKnown RBP12.79□□□□□ -0.36
CD46-213ENST00000471987 IFFO2Q5TF58 517 aa12.78□□□□□ -0.36
CD46-213ENST00000471987 FCHSD2O94868 740 aa12.76□□□□□ -0.37
CD46-213ENST00000471987 PPP4CP60510 307 aa12.76□□□□□ -0.37
CD46-213ENST00000471987 EYA1Q99502 592 aa12.73□□□□□ -0.37
CD46-213ENST00000471987 ITGBL1O95965 494 aaPredicted RBP12.72□□□□□ -0.37
CD46-213ENST00000471987 RBM26Q5T8P6 1007 aaKnown RBP12.72□□□□□ -0.37
CD46-213ENST00000471987 RNF40O75150 1001 aa12.7□□□□□ -0.38
CD46-213ENST00000471987 RBM46Q8TBY0 533 aaKnown RBP12.7□□□□□ -0.38
CD46-213ENST00000471987 SLC4A3P48751 1232 aa12.69□□□□□ -0.38
CD46-213ENST00000471987 SWT1Q5T5J6 900 aaKnown RBP12.69□□□□□ -0.38
CD46-213ENST00000471987 NECTIN2Q92692 538 aa12.69□□□□□ -0.38
CD46-213ENST00000471987 HIC1Q14526 733 aa12.68□□□□□ -0.38
CD46-213ENST00000471987 SLF2Q8IX21 1173 aa12.68□□□□□ -0.38
CD46-213ENST00000471987 ADGRG1Q9Y653 693 aa12.68□□□□□ -0.38
CD46-213ENST00000471987 DNAJB2P25686 324 aa12.66□□□□□ -0.38
CD46-213ENST00000471987 KCNC4Q03721 635 aa12.66□□□□□ -0.38
CD46-213ENST00000471987 A0A0G2JS52 829 aa12.64□□□□□ -0.39
CD46-213ENST00000471987 OATP04181 439 aa12.62□□□□□ -0.39
CD46-213ENST00000471987 FAM161AQ3B820 660 aa12.62□□□□□ -0.39
CD46-213ENST00000471987 TULP1O00294 542 aaPredicted RBP12.61□□□□□ -0.39
CD46-213ENST00000471987 GNPATO15228 680 aa12.61□□□□□ -0.39
CD46-213ENST00000471987 TMEM134Q9H6X4 195 aa12.61□□□□□ -0.39
CD46-213ENST00000471987 RCCD1A6NED2 376 aa12.6□□□□□ -0.39
CD46-213ENST00000471987 GPR37O15354 613 aa12.59□□□□□ -0.39
CD46-213ENST00000471987 GPIHBP1Q8IV16 184 aa12.59□□□□□ -0.39
CD46-213ENST00000471987 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.58□□□□□ -0.4
CD46-213ENST00000471987 RGS20O76081 388 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms