RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 AEBP2Q6ZN18 517 aaPredicted RBP31.42■■■□□ 2.62
CD46-213ENST00000471987 CHIC1Q5VXU3 224 aa30.27■■■□□ 2.44
CD46-213ENST00000471987 SENP3Q9H4L4 574 aaPredicted RBP26.82■■□□□ 1.88
CD46-213ENST00000471987 PHF23Q9BUL5 403 aaPredicted RBP26.52■■□□□ 1.84
CD46-213ENST00000471987 FOXD1Q16676 465 aa24.9■■□□□ 1.58
CD46-213ENST00000471987 PLPPR3Q6T4P5 718 aa24.4■■□□□ 1.5
CD46-213ENST00000471987 POTEDQ86YR6 584 aa24.06■■□□□ 1.44
CD46-213ENST00000471987 PPP6R1Q9UPN7 881 aa23.56■■□□□ 1.36
CD46-213ENST00000471987 ADRA2BP18089 450 aa23.52■■□□□ 1.36
CD46-213ENST00000471987 PIAS4Q8N2W9 510 aaPredicted RBP23.39■■□□□ 1.33
CD46-213ENST00000471987 MSH5O43196 834 aa23.21■■□□□ 1.31
CD46-213ENST00000471987 SCAF1Q9H7N4 1312 aaKnown RBP21.61■■□□□ 1.05
CD46-213ENST00000471987 MAPK8IP2Q13387 824 aaPredicted RBP21.47■■□□□ 1.03
CD46-213ENST00000471987 PPP4R3CPQ6ZMV5 832 aa21.4■■□□□ 1.02
CD46-213ENST00000471987 DMRT2Q9Y5R5 561 aa21.31■■□□□ 1
CD46-213ENST00000471987 CNKSR2Q8WXI2 1034 aa20.94■□□□□ 0.94
CD46-213ENST00000471987 NCBP3Q53F19 620 aaKnown RBP20.76■□□□□ 0.91
CD46-213ENST00000471987 HOXD11P31277 338 aaPredicted RBP20.68■□□□□ 0.9
CD46-213ENST00000471987 RNF216Q9NWF9 866 aaPredicted RBP20.65■□□□□ 0.9
CD46-213ENST00000471987 DCAF8L1A6NGE4 600 aa20.42■□□□□ 0.86
CD46-213ENST00000471987 NPM3O75607 178 aaKnown RBP20.4■□□□□ 0.86
CD46-213ENST00000471987 KCNA4P22459 653 aa20.35■□□□□ 0.85
CD46-213ENST00000471987 CACNB1Q02641 598 aaPredicted RBP20.04■□□□□ 0.8
CD46-213ENST00000471987 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
CD46-213ENST00000471987 RNF39Q9H2S5 420 aa19.8■□□□□ 0.76
CD46-213ENST00000471987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.73■□□□□ 0.754e-9■■□□□ 11.7
CD46-213ENST00000471987 C1QBPQ07021 282 aaKnown RBP19.58■□□□□ 0.72
CD46-213ENST00000471987 SLC4A2P04920 1241 aa19.36■□□□□ 0.69
CD46-213ENST00000471987 SLC4A1APQ9BWU0 796 aaKnown RBP19.32■□□□□ 0.68
CD46-213ENST00000471987 U3KPZ7 1027 aaPredicted RBP19.32■□□□□ 0.68
CD46-213ENST00000471987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
CD46-213ENST00000471987 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
CD46-213ENST00000471987 APLP2Q06481 763 aa18.92■□□□□ 0.62
CD46-213ENST00000471987 SPINK5Q9NQ38 1064 aaPredicted RBP18.91■□□□□ 0.62
CD46-213ENST00000471987 CAPN15O75808 1086 aa18.9■□□□□ 0.62
CD46-213ENST00000471987 FOXD4L1Q9NU39 408 aa18.9■□□□□ 0.62
CD46-213ENST00000471987 MYCNP04198 464 aaPredicted RBP18.89■□□□□ 0.61
CD46-213ENST00000471987 SAMD1Q6SPF0 538 aaPredicted RBP18.88■□□□□ 0.61
CD46-213ENST00000471987 ZNF219Q9P2Y4 722 aaPredicted RBP18.7■□□□□ 0.58
CD46-213ENST00000471987 ZBTB22O15209 634 aa18.68■□□□□ 0.58
CD46-213ENST00000471987 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
CD46-213ENST00000471987 DSG3P32926 999 aa18.68■□□□□ 0.58
CD46-213ENST00000471987 POTEHQ6S545 545 aa18.59■□□□□ 0.57
CD46-213ENST00000471987 ABCB7O75027 752 aa18.46■□□□□ 0.55
CD46-213ENST00000471987 ATF5Q9Y2D1 282 aaPredicted RBP18.35■□□□□ 0.53
CD46-213ENST00000471987 ATXN8OSP0DMR3 200 aa18.31■□□□□ 0.52
CD46-213ENST00000471987 POLA2Q14181 598 aa18.27■□□□□ 0.52
CD46-213ENST00000471987 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.51
CD46-213ENST00000471987 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
CD46-213ENST00000471987 ZBTB12Q9Y330 459 aaPredicted RBP17.99■□□□□ 0.47
CD46-213ENST00000471987 RBM42Q9BTD8 480 aaKnown RBP17.87■□□□□ 0.45
CD46-213ENST00000471987 FBLN2P98095 1184 aa17.7■□□□□ 0.42
CD46-213ENST00000471987 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
CD46-213ENST00000471987 MKRN4PQ13434 485 aaPredicted RBP17.55■□□□□ 0.4
CD46-213ENST00000471987 AKT1S1Q96B36 256 aa17.52■□□□□ 0.4
CD46-213ENST00000471987 SPDYE2BA6NHP3 402 aa17.44■□□□□ 0.38
CD46-213ENST00000471987 SPDYE6P0CI01 402 aa17.44■□□□□ 0.38
CD46-213ENST00000471987 SPDYE2Q495Y8 402 aa17.44■□□□□ 0.38
CD46-213ENST00000471987 REM2Q8IYK8 340 aaPredicted RBP17.33■□□□□ 0.36
CD46-213ENST00000471987 ZNF692Q9BU19 519 aaPredicted RBP17.29■□□□□ 0.36
CD46-213ENST00000471987 CHRDL2Q6WN34 429 aa17.28■□□□□ 0.36
CD46-213ENST00000471987 SSUH2Q9Y2M2 353 aa17.23■□□□□ 0.35
CD46-213ENST00000471987 PITPNM1O00562 1244 aa17.13■□□□□ 0.33
CD46-213ENST00000471987 SPDYE1Q8NFV5 336 aaPredicted RBP17.05■□□□□ 0.32
CD46-213ENST00000471987 PABPN1Q86U42 306 aaKnown RBP eCLIP17.03■□□□□ 0.32
CD46-213ENST00000471987 SPDYE4A6NLX3 237 aa16.97■□□□□ 0.31
CD46-213ENST00000471987 CLEC11AQ9Y240 323 aa16.97■□□□□ 0.31
CD46-213ENST00000471987 PIP4P2Q8N4L2 257 aa16.93■□□□□ 0.3
CD46-213ENST00000471987 FXR2P51116 673 aaKnown RBP eCLIP16.91■□□□□ 0.3
CD46-213ENST00000471987 SP7Q8TDD2 431 aaPredicted RBP16.88■□□□□ 0.29
CD46-213ENST00000471987 PRR29P0C7W0 189 aa16.77■□□□□ 0.28
CD46-213ENST00000471987 PRKAR2AP13861 404 aaKnown RBP16.71■□□□□ 0.27
CD46-213ENST00000471987 STAG3Q9UJ98 1225 aa16.7■□□□□ 0.26
CD46-213ENST00000471987 PROM2Q8N271 834 aa16.6■□□□□ 0.25
CD46-213ENST00000471987 CHADLQ6NUI6 762 aa16.57■□□□□ 0.24
CD46-213ENST00000471987 HAX1O00165 279 aa16.55■□□□□ 0.24
CD46-213ENST00000471987 FKBP8Q14318 412 aa16.51■□□□□ 0.23
CD46-213ENST00000471987 CREBZFQ9NS37 354 aa16.4■□□□□ 0.22
CD46-213ENST00000471987 FARP1Q9Y4F1 1045 aaPredicted RBP16.4■□□□□ 0.22
CD46-213ENST00000471987 C19orf67A6NJJ6 358 aa16.35■□□□□ 0.21
CD46-213ENST00000471987 EVX2Q03828 476 aa16.3■□□□□ 0.2
CD46-213ENST00000471987 CD44P16070 742 aaKnown RBP16.2■□□□□ 0.18
CD46-213ENST00000471987 NPM1P06748 294 aaKnown RBP eCLIP16.17■□□□□ 0.18
CD46-213ENST00000471987 PLEKHG5O94827 1062 aa16.16■□□□□ 0.18
CD46-213ENST00000471987 MNX1P50219 401 aaPredicted RBP16.16■□□□□ 0.18
CD46-213ENST00000471987 MIER1Q8N108 512 aa16.15■□□□□ 0.18
CD46-213ENST00000471987 FBXO3Q9UK99 471 aa16.11■□□□□ 0.17
CD46-213ENST00000471987 PLCD3Q8N3E9 789 aa16.08■□□□□ 0.16
CD46-213ENST00000471987 PAK3O75914 559 aaPredicted RBP16.04■□□□□ 0.16
CD46-213ENST00000471987 ZRANB1Q9UGI0 708 aa16.04■□□□□ 0.16
CD46-213ENST00000471987 GABBR2O75899 941 aa16.01■□□□□ 0.15
CD46-213ENST00000471987 ZNF579Q8NAF0 562 aaKnown RBP15.98■□□□□ 0.15
CD46-213ENST00000471987 ZBTB47Q9UFB7 747 aaPredicted RBP15.98■□□□□ 0.15
CD46-213ENST00000471987 CLCN6P51797 869 aa15.97■□□□□ 0.15
CD46-213ENST00000471987 VASPP50552 380 aaPredicted RBP15.86■□□□□ 0.13
CD46-213ENST00000471987 TSPYL2Q9H2G4 693 aaPredicted RBP15.85■□□□□ 0.13
CD46-213ENST00000471987 PHF12Q96QT6 1004 aa15.82■□□□□ 0.12
CD46-213ENST00000471987 RASEFQ8IZ41 740 aa15.8■□□□□ 0.12
CD46-213ENST00000471987 LHX8Q68G74 356 aa15.79■□□□□ 0.12
CD46-213ENST00000471987 NUBP1P53384 320 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms