RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 WASHC2CQ9Y4E1 1318 aa18.43■□□□□ 0.54
CCDC88A-211ENST00000471947 CNTLNQ9NXG0 1405 aa18.43■□□□□ 0.54
CCDC88A-211ENST00000471947 TCOF1Q13428 1488 aaKnown RBP18.43■□□□□ 0.54
CCDC88A-211ENST00000471947 DENND4BO75064 1496 aaPredicted RBP18.42■□□□□ 0.54
CCDC88A-211ENST00000471947 WDR43Q15061 677 aaKnown RBP eCLIP18.42■□□□□ 0.54
CCDC88A-211ENST00000471947 RPRD2Q5VT52 1461 aaKnown RBP18.42■□□□□ 0.54
CCDC88A-211ENST00000471947 ARID4BQ4LE39 1312 aaPredicted RBP18.41■□□□□ 0.54
CCDC88A-211ENST00000471947 PLIN1O60240 522 aa18.4■□□□□ 0.54
CCDC88A-211ENST00000471947 PPM1GO15355 546 aaPredicted RBP18.4■□□□□ 0.54
CCDC88A-211ENST00000471947 PZPP20742 1482 aa18.39■□□□□ 0.53
CCDC88A-211ENST00000471947 TRAPPC8Q9Y2L5 1435 aa18.37■□□□□ 0.53
CCDC88A-211ENST00000471947 CDCA7LQ96GN5 454 aa18.37■□□□□ 0.53
CCDC88A-211ENST00000471947 SYCP2Q9BX26 1530 aa18.37■□□□□ 0.53
CCDC88A-211ENST00000471947 ESF1Q9H501 851 aaKnown RBP18.37■□□□□ 0.53
CCDC88A-211ENST00000471947 NUTM2FA1L443 756 aa18.36■□□□□ 0.53
CCDC88A-211ENST00000471947 KANK1Q14678 1352 aa18.35■□□□□ 0.53
CCDC88A-211ENST00000471947 CCDC141Q6ZP82 1450 aa18.34■□□□□ 0.53
CCDC88A-211ENST00000471947 FAM69CQ0P6D2 419 aa18.34■□□□□ 0.53
CCDC88A-211ENST00000471947 SOX12O15370 315 aa18.32■□□□□ 0.52
CCDC88A-211ENST00000471947 RRP7AQ9Y3A4 280 aaKnown RBP18.32■□□□□ 0.52
CCDC88A-211ENST00000471947 RBM19Q9Y4C8 960 aaKnown RBP18.32■□□□□ 0.52
CCDC88A-211ENST00000471947 KTN1Q86UP2 1357 aaKnown RBP18.31■□□□□ 0.52
CCDC88A-211ENST00000471947 SRPK2P78362 688 aaKnown RBP18.29■□□□□ 0.52
CCDC88A-211ENST00000471947 CANXP27824 592 aaKnown RBP18.28■□□□□ 0.52
CCDC88A-211ENST00000471947 DNMT1P26358 1616 aaKnown RBP18.28■□□□□ 0.52
CCDC88A-211ENST00000471947 POGKQ9P215 609 aa18.27■□□□□ 0.52
CCDC88A-211ENST00000471947 ADGRF5Q8IZF2 1346 aa18.27■□□□□ 0.52
CCDC88A-211ENST00000471947 SKAP1Q86WV1 359 aa18.26■□□□□ 0.51
CCDC88A-211ENST00000471947 NLRP13Q86W25 1043 aa18.25■□□□□ 0.51
CCDC88A-211ENST00000471947 PPP4R2Q9NY27 417 aa18.25■□□□□ 0.51
CCDC88A-211ENST00000471947 PNISRQ8TF01 805 aaKnown RBP18.25■□□□□ 0.51
CCDC88A-211ENST00000471947 MYBBP1AQ9BQG0 1328 aaKnown RBP18.24■□□□□ 0.51
CCDC88A-211ENST00000471947 TEX14Q8IWB6 1497 aa18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 DISP3Q9P2K9 1392 aa18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 SLC12A5Q9H2X9 1139 aa18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 MINK1Q8N4C8 1332 aaPredicted RBP18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 TRHP20396 242 aaPredicted RBP18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 ADAMTS8Q9UP79 889 aa18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 U2SURPO15042 1029 aaKnown RBP18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 NUDCQ9Y266 331 aa18.23■□□□□ 0.51
CCDC88A-211ENST00000471947 ABCC10Q5T3U5 1492 aa18.22■□□□□ 0.51
CCDC88A-211ENST00000471947 ZBED9Q6R2W3 1325 aa18.22■□□□□ 0.51
CCDC88A-211ENST00000471947 FBXO31Q5XUX0 539 aaPredicted RBP18.22■□□□□ 0.51
CCDC88A-211ENST00000471947 RALBP1Q15311 655 aa18.21■□□□□ 0.51
CCDC88A-211ENST00000471947 EXOC6Q8TAG9 804 aa18.21■□□□□ 0.51
CCDC88A-211ENST00000471947 CABP2Q9NPB3 220 aa18.21■□□□□ 0.51
CCDC88A-211ENST00000471947 SLC24A1O60721 1099 aa18.2■□□□□ 0.5
CCDC88A-211ENST00000471947 MORC1Q86VD1 984 aa18.2■□□□□ 0.5
CCDC88A-211ENST00000471947 FRAT1Q92837 279 aaPredicted RBP18.2■□□□□ 0.5
CCDC88A-211ENST00000471947 MBD5Q9P267 1494 aa18.2■□□□□ 0.5
CCDC88A-211ENST00000471947 CFAP65Q6ZU64 1925 aaKnown RBP18.19■□□□□ 0.5
CCDC88A-211ENST00000471947 RCAN3Q9UKA8 241 aa18.19■□□□□ 0.5
CCDC88A-211ENST00000471947 CHD1O14646 1710 aa18.19■□□□□ 0.5
CCDC88A-211ENST00000471947 ABCA8O94911 1581 aa18.18■□□□□ 0.5
CCDC88A-211ENST00000471947 APAF1O14727 1248 aa18.18■□□□□ 0.5
CCDC88A-211ENST00000471947 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.18■□□□□ 0.5
CCDC88A-211ENST00000471947 FANCAO15360 1455 aa18.17■□□□□ 0.5
CCDC88A-211ENST00000471947 BCL2L13Q9BXK5 485 aa18.17■□□□□ 0.5
CCDC88A-211ENST00000471947 NBR1Q14596 966 aa18.16■□□□□ 0.5
CCDC88A-211ENST00000471947 PLCH2O75038 1416 aa18.16■□□□□ 0.5
CCDC88A-211ENST00000471947 ADGRL1O94910 1474 aa18.16■□□□□ 0.5
CCDC88A-211ENST00000471947 FAM135AQ9P2D6 1515 aa18.16■□□□□ 0.5
CCDC88A-211ENST00000471947 ASXL2Q76L83 1435 aa18.16■□□□□ 0.5
CCDC88A-211ENST00000471947 ARHGEF12Q9NZN5 1544 aa18.15■□□□□ 0.5
CCDC88A-211ENST00000471947 CDCA8Q53HL2 280 aa18.15■□□□□ 0.5
CCDC88A-211ENST00000471947 KDM5BQ9UGL1 1544 aa18.14■□□□□ 0.49
CCDC88A-211ENST00000471947 LAS1LQ9Y4W2 734 aaKnown RBP18.14■□□□□ 0.49
CCDC88A-211ENST00000471947 TTC37Q6PGP7 1564 aa18.14■□□□□ 0.49
CCDC88A-211ENST00000471947 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.14■□□□□ 0.49
CCDC88A-211ENST00000471947 FBLN1P23142 703 aa18.13■□□□□ 0.49
CCDC88A-211ENST00000471947 RGS3P49796 1198 aa18.13■□□□□ 0.49
CCDC88A-211ENST00000471947 TESK2Q96S53 571 aa18.13■□□□□ 0.49
CCDC88A-211ENST00000471947 CD109Q6YHK3 1445 aa18.13■□□□□ 0.49
CCDC88A-211ENST00000471947 ITSN2Q9NZM3 1697 aa18.12■□□□□ 0.49
CCDC88A-211ENST00000471947 GCC2Q8IWJ2 1684 aa18.11■□□□□ 0.49
CCDC88A-211ENST00000471947 GGNBP2Q9H3C7 697 aa18.11■□□□□ 0.49
CCDC88A-211ENST00000471947 ZBTB7CA1YPR0 619 aa18.11■□□□□ 0.49
CCDC88A-211ENST00000471947 SAMD9LQ8IVG5 1584 aa18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 U2AF1L5P0DN76 240 aaPredicted RBP18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 U2AF1Q01081 240 aaKnown RBP eCLIP18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 CLUAP1Q96AJ1 413 aa18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 ERBINQ96RT1 1412 aa18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 DHX29Q7Z478 1369 aaKnown RBP18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 PPP2R1AP30153 589 aa18.1■□□□□ 0.49
CCDC88A-211ENST00000471947 ABCC2Q92887 1545 aa18.09■□□□□ 0.49
CCDC88A-211ENST00000471947 IDI1Q13907 227 aa18.08■□□□□ 0.49
CCDC88A-211ENST00000471947 SPATA31E1Q6ZUB1 1445 aa18.08■□□□□ 0.48
CCDC88A-211ENST00000471947 CENPJQ9HC77 1338 aaPredicted RBP18.07■□□□□ 0.48
CCDC88A-211ENST00000471947 CDC42BPAQ5VT25 1732 aa18.06■□□□□ 0.48
CCDC88A-211ENST00000471947 C14orf37Q86TY3 774 aa18.06■□□□□ 0.48
CCDC88A-211ENST00000471947 PRAG1Q86YV5 1406 aa18.06■□□□□ 0.48
CCDC88A-211ENST00000471947 ADGRL2O95490 1459 aa18.05■□□□□ 0.48
CCDC88A-211ENST00000471947 A2MP01023 1474 aa18.05■□□□□ 0.48
CCDC88A-211ENST00000471947 CRBNQ96SW2 442 aa18.05■□□□□ 0.48
CCDC88A-211ENST00000471947 PLA2R1Q13018 1463 aa18.04■□□□□ 0.48
CCDC88A-211ENST00000471947 C20orf194Q5TEA3 1177 aa18.02■□□□□ 0.48
CCDC88A-211ENST00000471947 WAPLQ7Z5K2 1190 aa18.02■□□□□ 0.48
CCDC88A-211ENST00000471947 PER1O15534 1290 aaPredicted RBP18.02■□□□□ 0.48
CCDC88A-211ENST00000471947 TCERG1O14776 1098 aaKnown RBP18.02■□□□□ 0.47
CCDC88A-211ENST00000471947 RRP1P56182 461 aaKnown RBP18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms