RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 BCL11BQ9C0K0 894 aaPredicted RBP11.45□□□□□ -0.58
SMC4-212ENST00000470240 STK24Q9Y6E0 443 aa11.45□□□□□ -0.58
SMC4-212ENST00000470240 PTPN23Q9H3S7 1636 aa11.45□□□□□ -0.58
SMC4-212ENST00000470240 HFM1A2PYH4 1435 aa11.44□□□□□ -0.58
SMC4-212ENST00000470240 MAMSTRQ6ZN01 415 aa11.44□□□□□ -0.58
SMC4-212ENST00000470240 EFCAB3Q8N7B9 438 aa11.43□□□□□ -0.58
SMC4-212ENST00000470240 SCUBE2Q9NQ36 999 aa11.43□□□□□ -0.58
SMC4-212ENST00000470240 EPRSP07814 1512 aaKnown RBP11.42□□□□□ -0.58
SMC4-212ENST00000470240 KIAA0586Q9BVV6 1533 aa11.42□□□□□ -0.58
SMC4-212ENST00000470240 YTHDC1Q96MU7 727 aaKnown RBP11.42□□□□□ -0.58
SMC4-212ENST00000470240 MAGI1Q96QZ7 1491 aaPredicted RBP11.41□□□□□ -0.58
SMC4-212ENST00000470240 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
SMC4-212ENST00000470240 MIA2Q96PC5 1412 aa11.41□□□□□ -0.58
SMC4-212ENST00000470240 UACAQ9BZF9 1416 aa11.41□□□□□ -0.58
SMC4-212ENST00000470240 EIF4G3O43432 1585 aaKnown RBP11.41□□□□□ -0.58
SMC4-212ENST00000470240 ARHGEF11O15085 1522 aa11.4□□□□□ -0.58
SMC4-212ENST00000470240 GCC2Q8IWJ2 1684 aa11.4□□□□□ -0.58
SMC4-212ENST00000470240 TCOF1Q13428 1488 aaKnown RBP11.4□□□□□ -0.58
SMC4-212ENST00000470240 KIAA0556O60303 1618 aa11.4□□□□□ -0.58
SMC4-212ENST00000470240 AKNAQ7Z591 1439 aa11.4□□□□□ -0.58
SMC4-212ENST00000470240 TONSLQ96HA7 1378 aa11.4□□□□□ -0.59
SMC4-212ENST00000470240 OTUD5Q96G74 571 aa11.39□□□□□ -0.59
SMC4-212ENST00000470240 CDK11AQ9UQ88 783 aaPredicted RBP11.39□□□□□ -0.59
SMC4-212ENST00000470240 GTF3C3Q9Y5Q9 886 aa11.39□□□□□ -0.59
SMC4-212ENST00000470240 GRIN2AQ12879 1464 aa11.38□□□□□ -0.59
SMC4-212ENST00000470240 POTEJP0CG39 1038 aa11.38□□□□□ -0.59
SMC4-212ENST00000470240 PDCD7Q8N8D1 485 aaKnown RBP11.38□□□□□ -0.59
SMC4-212ENST00000470240 ZNF608Q9ULD9 1512 aaPredicted RBP11.36□□□□□ -0.59
SMC4-212ENST00000470240 RAPGEF6Q8TEU7 1601 aa11.36□□□□□ -0.59
SMC4-212ENST00000470240 SOX12O15370 315 aa11.36□□□□□ -0.59
SMC4-212ENST00000470240 NAIPQ13075 1403 aa11.35□□□□□ -0.59
SMC4-212ENST00000470240 G3V3G9 751 aa11.35□□□□□ -0.59
SMC4-212ENST00000470240 L3MBTL3Q96JM7 780 aaPredicted RBP11.35□□□□□ -0.59
SMC4-212ENST00000470240 RTN4Q9NQC3 1192 aaKnown RBP11.35□□□□□ -0.59
SMC4-212ENST00000470240 CARMIL2Q6F5E8 1435 aa11.35□□□□□ -0.59
SMC4-212ENST00000470240 SYNJ2O15056 1496 aa11.34□□□□□ -0.59
SMC4-212ENST00000470240 CDK13Q14004 1512 aaKnown RBP11.34□□□□□ -0.59
SMC4-212ENST00000470240 MAGI3Q5TCQ9 1506 aa11.34□□□□□ -0.59
SMC4-212ENST00000470240 ITSN2Q9NZM3 1697 aa11.33□□□□□ -0.6
SMC4-212ENST00000470240 DISP1Q96F81 1524 aa11.32□□□□□ -0.6
SMC4-212ENST00000470240 CHGAP10645 457 aaKnown RBP11.32□□□□□ -0.6
SMC4-212ENST00000470240 ILDR1Q86SU0 546 aaPredicted RBP11.32□□□□□ -0.6
SMC4-212ENST00000470240 CHMP7Q8WUX9 453 aaPredicted RBP11.31□□□□□ -0.6
SMC4-212ENST00000470240 SIN3AQ96ST3 1273 aa11.31□□□□□ -0.6
SMC4-212ENST00000470240 PHF8Q9UPP1 1060 aa11.31□□□□□ -0.6
SMC4-212ENST00000470240 PTPRKQ15262 1439 aa11.3□□□□□ -0.6
SMC4-212ENST00000470240 PPP1R15AO75807 674 aaPredicted RBP11.3□□□□□ -0.6
SMC4-212ENST00000470240 DPY19L2Q6NUT2 758 aa11.3□□□□□ -0.6
SMC4-212ENST00000470240 C3orf67Q6ZVT6 689 aa11.3□□□□□ -0.6
SMC4-212ENST00000470240 HS6ST3Q8IZP7 471 aa11.3□□□□□ -0.6
SMC4-212ENST00000470240 ROCK1Q13464 1354 aa11.29□□□□□ -0.6
SMC4-212ENST00000470240 DNMT1P26358 1616 aaKnown RBP11.29□□□□□ -0.6
SMC4-212ENST00000470240 NLRP6P59044 892 aa11.29□□□□□ -0.6
SMC4-212ENST00000470240 NUP153P49790 1475 aaKnown RBP11.28□□□□□ -0.6
SMC4-212ENST00000470240 TRIM52Q96A61 297 aa11.28□□□□□ -0.6
SMC4-212ENST00000470240 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.28□□□□□ -0.6
SMC4-212ENST00000470240 TROQ12816 1431 aaPredicted RBP11.27□□□□□ -0.6
SMC4-212ENST00000470240 BOLA1Q9Y3E2 137 aa11.27□□□□□ -0.61
SMC4-212ENST00000470240 CEP170Q5SW79 1584 aa11.27□□□□□ -0.61
SMC4-212ENST00000470240 ADCY10Q96PN6 1610 aa11.27□□□□□ -0.61
SMC4-212ENST00000470240 DAPK1P53355 1430 aa11.26□□□□□ -0.61
SMC4-212ENST00000470240 RRP7BPQ9NSQ0 103 aa11.26□□□□□ -0.61
SMC4-212ENST00000470240 ADGBQ8N7X0 1667 aa11.26□□□□□ -0.61
SMC4-212ENST00000470240 SLAIN1Q8ND83 568 aa11.25□□□□□ -0.61
SMC4-212ENST00000470240 NUP160Q12769 1436 aa11.25□□□□□ -0.61
SMC4-212ENST00000470240 ANP32CO43423 234 aa11.24□□□□□ -0.61
SMC4-212ENST00000470240 MFRPQ9BY79 579 aa11.24□□□□□ -0.61
SMC4-212ENST00000470240 CHIC2Q9UKJ5 165 aa11.24□□□□□ -0.61
SMC4-212ENST00000470240 ARID3CA6NKF2 412 aa11.22□□□□□ -0.61
SMC4-212ENST00000470240 KIF14Q15058 1648 aa11.22□□□□□ -0.61
SMC4-212ENST00000470240 MS4A4AQ96JQ5 239 aa11.22□□□□□ -0.61
SMC4-212ENST00000470240 CAMSAP2Q08AD1 1489 aa11.21□□□□□ -0.61
SMC4-212ENST00000470240 DDX10Q13206 875 aaKnown RBP11.21□□□□□ -0.61
SMC4-212ENST00000470240 FBXO22Q8NEZ5 403 aa11.21□□□□□ -0.61
SMC4-212ENST00000470240 CROCC2H7BZ55 1655 aa11.2□□□□□ -0.62
SMC4-212ENST00000470240 CCER2I3L3R5 266 aa11.2□□□□□ -0.62
SMC4-212ENST00000470240 CFDP1Q9UEE9 299 aaPredicted RBP11.2□□□□□ -0.62
SMC4-212ENST00000470240 ABCC5O15440 1437 aa11.19□□□□□ -0.62
SMC4-212ENST00000470240 JPH4Q96JJ6 628 aa11.19□□□□□ -0.62
SMC4-212ENST00000470240 MPHOSPH9Q99550 1183 aa11.19□□□□□ -0.62
SMC4-212ENST00000470240 PLEKHD1A6NEE1 506 aa11.18□□□□□ -0.62
SMC4-212ENST00000470240 PLB1Q6P1J6 1458 aa11.18□□□□□ -0.62
SMC4-212ENST00000470240 ANKRD30AQ9BXX3 1397 aa11.17□□□□□ -0.62
SMC4-212ENST00000470240 ABCA8O94911 1581 aa11.17□□□□□ -0.62
SMC4-212ENST00000470240 MICALL2Q8IY33 904 aa11.17□□□□□ -0.62
SMC4-212ENST00000470240 ADGRL2O95490 1459 aa11.16□□□□□ -0.62
SMC4-212ENST00000470240 SHANK2Q9UPX8 1470 aa11.16□□□□□ -0.62
SMC4-212ENST00000470240 PRG4Q92954 1404 aaPredicted RBP11.16□□□□□ -0.62
SMC4-212ENST00000470240 KDM6BO15054 1643 aa11.16□□□□□ -0.62
SMC4-212ENST00000470240 GPATCH8Q9UKJ3 1502 aaKnown RBP11.15□□□□□ -0.62
SMC4-212ENST00000470240 EIF4G2P78344 907 aaKnown RBP eCLIP11.15□□□□□ -0.62
SMC4-212ENST00000470240 TMEM121BQ9BXQ6 578 aaPredicted RBP11.14□□□□□ -0.63
SMC4-212ENST00000470240 RPRD2Q5VT52 1461 aaKnown RBP11.13□□□□□ -0.63
SMC4-212ENST00000470240 CDC42BPAQ5VT25 1732 aa11.12□□□□□ -0.63
SMC4-212ENST00000470240 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
SMC4-212ENST00000470240 RYDENQ9NUL5 291 aaKnown RBP11.12□□□□□ -0.63
SMC4-212ENST00000470240 ZNF777Q9ULD5 760 aaPredicted RBP11.12□□□□□ -0.63
SMC4-212ENST00000470240 KDM5BQ9UGL1 1544 aa11.12□□□□□ -0.63
SMC4-212ENST00000470240 NCOA1Q15788 1441 aa11.11□□□□□ -0.63
SMC4-212ENST00000470240 NEFLP07196 543 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms