RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 TIMELESSQ9UNS1 1208 aa7.52□□□□□ -1.21
SF3B1-207ENST00000468925 CENPBP07199 599 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-207ENST00000468925 HAP1P54257 671 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-207ENST00000468925 TPRNQ4KMQ1 711 aa7.5□□□□□ -1.21
SF3B1-207ENST00000468925 BBXQ8WY36 941 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-207ENST00000468925 ADAM33Q9BZ11 813 aa7.5□□□□□ -1.21
SF3B1-207ENST00000468925 VPS9D1Q9Y2B5 631 aa7.5□□□□□ -1.21
SF3B1-207ENST00000468925 CCDC180Q9P1Z9 1646 aa7.49□□□□□ -1.21
SF3B1-207ENST00000468925 ITGBL1O95965 494 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-207ENST00000468925 ZNF775Q96BV0 537 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-207ENST00000468925 CFAP44Q96MT7 982 aa7.49□□□□□ -1.21
SF3B1-207ENST00000468925 PCGF6Q9BYE7 350 aa7.49□□□□□ -1.21
SF3B1-207ENST00000468925 DPYSL4O14531 572 aa7.48□□□□□ -1.21
SF3B1-207ENST00000468925 PTPREP23469 700 aa7.48□□□□□ -1.21
SF3B1-207ENST00000468925 ZDHHC16Q969W1 377 aa7.48□□□□□ -1.21
SF3B1-207ENST00000468925 JPH4Q96JJ6 628 aa7.48□□□□□ -1.21
SF3B1-207ENST00000468925 BCL2L12Q9HB09 334 aa7.48□□□□□ -1.21
SF3B1-207ENST00000468925 BHMG1C9JSJ3 638 aaPredicted RBP7.47□□□□□ -1.21
SF3B1-207ENST00000468925 PAXIP1Q6ZW49 1069 aaPredicted RBP7.47□□□□□ -1.21
SF3B1-207ENST00000468925 SPRYD3Q8NCJ5 442 aa7.46□□□□□ -1.22
SF3B1-207ENST00000468925 ANO8Q9HCE9 1232 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-207ENST00000468925 ACIN1Q9UKV3 1341 aaKnown RBP7.46□□□□□ -1.22
SF3B1-207ENST00000468925 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-207ENST00000468925 PCDHGA10Q9Y5H3 936 aa7.45□□□□□ -1.22
SF3B1-207ENST00000468925 LOC100996750A0A140TA64 210 aa7.44□□□□□ -1.22
SF3B1-207ENST00000468925 GFRA3O60609 400 aa7.44□□□□□ -1.22
SF3B1-207ENST00000468925 TRIM26Q12899 539 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-207ENST00000468925 ZNF787Q6DD87 383 aa7.44□□□□□ -1.22
SF3B1-207ENST00000468925 RBM33Q96EV2 1170 aaKnown RBP7.44□□□□□ -1.22
SF3B1-207ENST00000468925 ZBED2Q9BTP6 218 aa7.44□□□□□ -1.22
SF3B1-207ENST00000468925 KRTAP4-6Q9BYQ5 205 aa7.44□□□□□ -1.22
SF3B1-207ENST00000468925 GOLGA8CPA6NN73 597 aa7.43□□□□□ -1.22
SF3B1-207ENST00000468925 PROX2Q3B8N5 592 aa7.43□□□□□ -1.22
SF3B1-207ENST00000468925 DDX12PQ92771 950 aa7.43□□□□□ -1.22
SF3B1-207ENST00000468925 TULP1O00294 542 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-207ENST00000468925 COL9A1P20849 921 aa7.42□□□□□ -1.22
SF3B1-207ENST00000468925 PPARGC1BQ86YN6 1023 aaKnown RBP7.42□□□□□ -1.22
SF3B1-207ENST00000468925 WNT2BQ93097 391 aa7.42□□□□□ -1.22
SF3B1-207ENST00000468925 SLC4A5Q9BY07 1137 aa7.42□□□□□ -1.22
SF3B1-207ENST00000468925 TYW1BQ6NUM6 668 aa7.41□□□□□ -1.22
SF3B1-207ENST00000468925 MRPL50Q8N5N7 158 aaKnown RBP7.41□□□□□ -1.22
SF3B1-207ENST00000468925 CLSPNQ9HAW4 1339 aa7.41□□□□□ -1.22
SF3B1-207ENST00000468925 CAMK2BQ13554 666 aa7.39□□□□□ -1.23
SF3B1-207ENST00000468925 PPP1R3GB7ZBB8 358 aa7.38□□□□□ -1.23
SF3B1-207ENST00000468925 NRG2O14511 850 aaPredicted RBP7.38□□□□□ -1.23
SF3B1-207ENST00000468925 PHF14O94880 888 aa7.38□□□□□ -1.23
SF3B1-207ENST00000468925 VSIG10Q8N0Z9 540 aa7.38□□□□□ -1.23
SF3B1-207ENST00000468925 NBR1Q14596 966 aa7.37□□□□□ -1.23
SF3B1-207ENST00000468925 FBXW7Q969H0 707 aa7.36□□□□□ -1.23
SF3B1-207ENST00000468925 NBPF3Q9H094 633 aa7.36□□□□□ -1.23
SF3B1-207ENST00000468925 SEPT9Q9UHD8 586 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-207ENST00000468925 C6orf132Q5T0Z8 1188 aa7.35□□□□□ -1.23
SF3B1-207ENST00000468925 WDR70Q9NW82 654 aa7.35□□□□□ -1.23
SF3B1-207ENST00000468925 MAP3K7O43318 606 aa7.34□□□□□ -1.23
SF3B1-207ENST00000468925 TSR1Q2NL82 804 aaKnown RBP7.34□□□□□ -1.23
SF3B1-207ENST00000468925 KIAA1468Q9P260 1216 aa7.34□□□□□ -1.23
SF3B1-207ENST00000468925 GRXCR2A6NFK2 248 aa7.33□□□□□ -1.24
SF3B1-207ENST00000468925 BCAMP50895 628 aa7.33□□□□□ -1.24
SF3B1-207ENST00000468925 E2F4Q16254 413 aa7.33□□□□□ -1.24
SF3B1-207ENST00000468925 EPAS1Q99814 870 aa7.33□□□□□ -1.24
SF3B1-207ENST00000468925 HOMEZQ8IX15 550 aa7.32□□□□□ -1.24
SF3B1-207ENST00000468925 RABGEF1Q9UJ41 708 aa7.32□□□□□ -1.24
SF3B1-207ENST00000468925 PDIA6Q15084 440 aa7.31□□□□□ -1.24
SF3B1-207ENST00000468925 ANKK1Q8NFD2 765 aa7.31□□□□□ -1.24
SF3B1-207ENST00000468925 BCL11AQ9H165 835 aa7.31□□□□□ -1.24
SF3B1-207ENST00000468925 PRIM1P49642 420 aaKnown RBP7.3□□□□□ -1.24
SF3B1-207ENST00000468925 LCE2AQ5TA79 106 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-207ENST00000468925 TRIM6-TRIM34B2RNG4 842 aa7.29□□□□□ -1.24
SF3B1-207ENST00000468925 KCNC4Q03721 635 aa7.29□□□□□ -1.24
SF3B1-207ENST00000468925 EN1Q05925 392 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-207ENST00000468925 GTF3C3Q9Y5Q9 886 aa7.29□□□□□ -1.24
SF3B1-207ENST00000468925 SMAPO00193 183 aa7.28□□□□□ -1.24
SF3B1-207ENST00000468925 ZFRQ96KR1 1074 aaKnown RBP7.28□□□□□ -1.24
SF3B1-207ENST00000468925 TSHZ2Q9NRE2 1034 aa7.28□□□□□ -1.24
SF3B1-207ENST00000468925 CDHR5Q9HBB8 845 aa7.27□□□□□ -1.25
SF3B1-207ENST00000468925 MYO15BQ96JP2 1530 aa7.27□□□□□ -1.25
SF3B1-207ENST00000468925 SPDYE16A6NNV3 312 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-207ENST00000468925 ANP32EQ9BTT0 268 aa7.26□□□□□ -1.25
SF3B1-207ENST00000468925 TSKSQ9UJT2 592 aa7.26□□□□□ -1.25
SF3B1-207ENST00000468925 NEUROD1Q13562 356 aa7.25□□□□□ -1.25
SF3B1-207ENST00000468925 WBP1LQ9NX94 342 aa7.25□□□□□ -1.25
SF3B1-207ENST00000468925 SOWAHBA6NEL2 793 aa7.24□□□□□ -1.25
SF3B1-207ENST00000468925 NYAP1Q6ZVC0 841 aa7.24□□□□□ -1.25
SF3B1-207ENST00000468925 C3orf80F5H4A9 247 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 LAPTM4BQ86VI4 370 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 CDCA7LQ96GN5 454 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 PRKD2Q9BZL6 878 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 FAM198AQ9UFP1 575 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 HPS5Q9UPZ3 1129 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 KDM2AQ9Y2K7 1162 aa7.23□□□□□ -1.25
SF3B1-207ENST00000468925 FAM98CQ17RN3 349 aaKnown RBP7.22□□□□□ -1.25
SF3B1-207ENST00000468925 PACS2Q86VP3 889 aa7.22□□□□□ -1.25
SF3B1-207ENST00000468925 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.22□□□□□ -1.25
SF3B1-207ENST00000468925 RNF40O75150 1001 aa7.21□□□□□ -1.26
SF3B1-207ENST00000468925 LRCH3Q96II8 777 aa7.21□□□□□ -1.26
SF3B1-207ENST00000468925 PNMA3Q9UL41 463 aa7.21□□□□□ -1.26
SF3B1-207ENST00000468925 OSBPP22059 807 aa7.2□□□□□ -1.26
SF3B1-207ENST00000468925 PRSS12P56730 875 aa7.2□□□□□ -1.26
SF3B1-207ENST00000468925 ONECUT3O60422 494 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-207ENST00000468925 MLLT3P42568 568 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms