RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 TSPOAP1O95153 1857 aa27.28■■□□□ 1.96
SMC4-209ENST00000468653 RPRD2Q5VT52 1461 aaKnown RBP27.28■■□□□ 1.96
SMC4-209ENST00000468653 IQGAP3Q86VI3 1631 aa27.27■■□□□ 1.96
SMC4-209ENST00000468653 KIF3BO15066 747 aa27.25■■□□□ 1.95
SMC4-209ENST00000468653 A2MP01023 1474 aa27.24■■□□□ 1.95
SMC4-209ENST00000468653 PPRC1Q5VV67 1664 aaKnown RBP27.23■■□□□ 1.95
SMC4-209ENST00000468653 RICTORQ6R327 1708 aa27.23■■□□□ 1.95
SMC4-209ENST00000468653 KIF13AQ9H1H9 1805 aa27.22■■□□□ 1.95
SMC4-209ENST00000468653 EIF2AK4Q9P2K8 1649 aaKnown RBP27.22■■□□□ 1.95
SMC4-209ENST00000468653 KANK1Q14678 1352 aa27.2■■□□□ 1.95
SMC4-209ENST00000468653 DEPDC5O75140 1603 aa27.19■■□□□ 1.94
SMC4-209ENST00000468653 L3MBTL2Q969R5 705 aa27.18■■□□□ 1.94
SMC4-209ENST00000468653 ABCA6Q8N139 1617 aa27.17■■□□□ 1.94
SMC4-209ENST00000468653 FRMPD1Q5SYB0 1578 aa27.14■■□□□ 1.94
SMC4-209ENST00000468653 PRDM15P57071 1507 aaPredicted RBP27.11■■□□□ 1.93
SMC4-209ENST00000468653 DIP2CQ9Y2E4 1556 aa27.11■■□□□ 1.93
SMC4-209ENST00000468653 ZMYM4Q5VZL5 1548 aa27.1■■□□□ 1.93
SMC4-209ENST00000468653 VWDEQ8N2E2 1590 aa27.09■■□□□ 1.93
SMC4-209ENST00000468653 YEATS2Q9ULM3 1422 aa27.09■■□□□ 1.93
SMC4-209ENST00000468653 MROH1Q8NDA8 1641 aa27.09■■□□□ 1.93
SMC4-209ENST00000468653 CCDC144AA2RUR9 1427 aa27.08■■□□□ 1.93
SMC4-209ENST00000468653 RNF17Q9BXT8 1623 aaKnown RBP27.06■■□□□ 1.92
SMC4-209ENST00000468653 PLA2R1Q13018 1463 aa27.06■■□□□ 1.92
SMC4-209ENST00000468653 TET3O43151 1660 aa27.05■■□□□ 1.92
SMC4-209ENST00000468653 DIEXFQ68CQ4 756 aaKnown RBP27.04■■□□□ 1.92
SMC4-209ENST00000468653 GGT6Q6P531 493 aa27.04■■□□□ 1.92
SMC4-209ENST00000468653 ATP10AO60312 1499 aa27.03■■□□□ 1.92
SMC4-209ENST00000468653 E9PCH4 1651 aa27.03■■□□□ 1.92
SMC4-209ENST00000468653 DNAJC5Q9H3Z4 198 aa27.03■■□□□ 1.92
SMC4-209ENST00000468653 BCORL1Q5H9F3 1711 aa27.03■■□□□ 1.92
SMC4-209ENST00000468653 COL17A1Q9UMD9 1497 aaPredicted RBP26.98■■□□□ 1.91
SMC4-209ENST00000468653 LMTK2Q8IWU2 1503 aa26.98■■□□□ 1.91
SMC4-209ENST00000468653 NBPF8Q3BBV2 869 aa26.96■■□□□ 1.91
SMC4-209ENST00000468653 TRHP20396 242 aaPredicted RBP26.95■■□□□ 1.9
SMC4-209ENST00000468653 PTPRTO14522 1441 aa26.95■■□□□ 1.9
SMC4-209ENST00000468653 WASHC2CQ9Y4E1 1318 aa26.94■■□□□ 1.9
SMC4-209ENST00000468653 EFCAB6Q5THR3 1501 aa26.94■■□□□ 1.9
SMC4-209ENST00000468653 CEP152O94986 1710 aa26.93■■□□□ 1.9
SMC4-209ENST00000468653 TRPM2O94759 1503 aa26.93■■□□□ 1.9
SMC4-209ENST00000468653 SPHKAPQ2M3C7 1700 aa26.92■■□□□ 1.9
SMC4-209ENST00000468653 ZNF326Q5BKZ1 582 aaKnown RBP26.91■■□□□ 1.9
SMC4-209ENST00000468653 DCAF11Q8TEB1 546 aa26.91■■□□□ 1.9
SMC4-209ENST00000468653 RGL3Q3MIN7 710 aa26.9■■□□□ 1.9
SMC4-209ENST00000468653 KDM2AQ9Y2K7 1162 aa26.89■■□□□ 1.9
SMC4-209ENST00000468653 ABCC3O15438 1527 aa26.89■■□□□ 1.9
SMC4-209ENST00000468653 REREQ9P2R6 1566 aa26.88■■□□□ 1.89
SMC4-209ENST00000468653 HIRIP3Q9BW71 556 aaPredicted RBP26.86■■□□□ 1.89
SMC4-209ENST00000468653 UHRF1BP1Q6BDS2 1440 aa26.86■■□□□ 1.89
SMC4-209ENST00000468653 AGLP35573 1532 aa26.84■■□□□ 1.89
SMC4-209ENST00000468653 ARHGEF40Q8TER5 1519 aa26.84■■□□□ 1.89
SMC4-209ENST00000468653 NPATQ14207 1427 aa26.83■■□□□ 1.89
SMC4-209ENST00000468653 EIF4G2P78344 907 aaKnown RBP eCLIP26.83■■□□□ 1.89
SMC4-209ENST00000468653 CLTCL1P53675 1640 aa26.83■■□□□ 1.89
SMC4-209ENST00000468653 SPATA31E1Q6ZUB1 1445 aa26.81■■□□□ 1.88
SMC4-209ENST00000468653 CAMSAP1Q5T5Y3 1602 aa26.8■■□□□ 1.88
SMC4-209ENST00000468653 ZC3H13Q5T200 1668 aaKnown RBP26.8■■□□□ 1.88
SMC4-209ENST00000468653 HSPA5P11021 654 aaKnown RBP26.8■■□□□ 1.88
SMC4-209ENST00000468653 PPP6R1Q9UPN7 881 aa26.76■■□□□ 1.88
SMC4-209ENST00000468653 ARHGAP31Q2M1Z3 1444 aa26.75■■□□□ 1.87
SMC4-209ENST00000468653 CNTLNQ9NXG0 1405 aa26.75■■□□□ 1.87
SMC4-209ENST00000468653 RALGAPBQ86X10 1494 aa26.75■■□□□ 1.87
SMC4-209ENST00000468653 UGGT1Q9NYU2 1555 aa26.74■■□□□ 1.87
SMC4-209ENST00000468653 PRAG1Q86YV5 1406 aa26.74■■□□□ 1.87
SMC4-209ENST00000468653 CFAP65Q6ZU64 1925 aaKnown RBP26.73■■□□□ 1.87
SMC4-209ENST00000468653 MLECQ14165 292 aa26.71■■□□□ 1.87
SMC4-209ENST00000468653 SIGLEC1Q9BZZ2 1709 aa26.71■■□□□ 1.87
SMC4-209ENST00000468653 NOS1P29475 1434 aa26.7■■□□□ 1.86
SMC4-209ENST00000468653 NEURL4Q96JN8 1562 aa26.7■■□□□ 1.86
SMC4-209ENST00000468653 STAC3Q96MF2 364 aa26.69■■□□□ 1.86
SMC4-209ENST00000468653 CARD11Q9BXL7 1154 aa26.69■■□□□ 1.86
SMC4-209ENST00000468653 KIF1BO60333 1816 aa26.68■■□□□ 1.86
SMC4-209ENST00000468653 ARID4BQ4LE39 1312 aaPredicted RBP26.67■■□□□ 1.86
SMC4-209ENST00000468653 ROCK2O75116 1388 aaKnown RBP26.66■■□□□ 1.86
SMC4-209ENST00000468653 CHGAP10645 457 aaKnown RBP26.66■■□□□ 1.86
SMC4-209ENST00000468653 USP47Q96K76 1375 aa26.65■■□□□ 1.86
SMC4-209ENST00000468653 DDX10Q13206 875 aaKnown RBP26.64■■□□□ 1.86
SMC4-209ENST00000468653 TRPM1Q7Z4N2 1603 aa26.63■■□□□ 1.85
SMC4-209ENST00000468653 ESF1Q9H501 851 aaKnown RBP26.63■■□□□ 1.85
SMC4-209ENST00000468653 SYNMO15061 1565 aa26.61■■□□□ 1.85
SMC4-209ENST00000468653 MIER1Q8N108 512 aa26.61■■□□□ 1.85
SMC4-209ENST00000468653 CLTCQ00610 1675 aaKnown RBP26.61■■□□□ 1.85
SMC4-209ENST00000468653 ADGRB3O60242 1522 aa26.6■■□□□ 1.85
SMC4-209ENST00000468653 SLC52A1Q9NWF4 448 aa26.58■■□□□ 1.85
SMC4-209ENST00000468653 PREX1Q8TCU6 1659 aa26.58■■□□□ 1.85
SMC4-209ENST00000468653 MROH2AA6NES4 1674 aa26.58■■□□□ 1.85
SMC4-209ENST00000468653 NBPF1Q3BBV0 1214 aa26.58■■□□□ 1.85
SMC4-209ENST00000468653 FBXO31Q5XUX0 539 aaPredicted RBP26.57■■□□□ 1.84
SMC4-209ENST00000468653 PIK3C2BO00750 1634 aa26.57■■□□□ 1.84
SMC4-209ENST00000468653 MADDQ8WXG6 1647 aa26.57■■□□□ 1.84
SMC4-209ENST00000468653 GPRASP1Q5JY77 1395 aa26.56■■□□□ 1.84
SMC4-209ENST00000468653 IDI1Q13907 227 aa26.56■■□□□ 1.84
SMC4-209ENST00000468653 ERVK-7P63135 1459 aa26.55■■□□□ 1.84
SMC4-209ENST00000468653 WASHC2AQ641Q2 1341 aa26.55■■□□□ 1.84
SMC4-209ENST00000468653 MYOM2P54296 1465 aa26.54■■□□□ 1.84
SMC4-209ENST00000468653 RPGRIP1LQ68CZ1 1315 aa26.53■■□□□ 1.84
SMC4-209ENST00000468653 LAMC1P11047 1609 aa26.51■■□□□ 1.83
SMC4-209ENST00000468653 C11orf95C9JLR9 678 aaPredicted RBP26.51■■□□□ 1.83
SMC4-209ENST00000468653 IFT172Q9UG01 1749 aa26.5■■□□□ 1.83
SMC4-209ENST00000468653 ZMYM3Q14202 1370 aa26.5■■□□□ 1.83
SMC4-209ENST00000468653 CCDC7Q96M83 1385 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms