RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 MEX3CQ5U5Q3 659 aaKnown RBP10.97□□□□□ -0.65
HPS4-209ENST00000466781 CHMP4AQ9BY43 222 aa10.97□□□□□ -0.65
HPS4-209ENST00000466781 SPRYD3Q8NCJ5 442 aa10.97□□□□□ -0.65
HPS4-209ENST00000466781 NGDNQ8NEJ9 315 aaKnown RBP10.97□□□□□ -0.65
HPS4-209ENST00000466781 NOP58Q9Y2X3 529 aaKnown RBP10.97□□□□□ -0.65
HPS4-209ENST00000466781 TPM4P67936 248 aa10.97□□□□□ -0.65
HPS4-209ENST00000466781 CUX1P39880 1505 aa10.96□□□□□ -0.65
HPS4-209ENST00000466781 HSP90B1P14625 803 aaKnown RBP10.96□□□□□ -0.66
HPS4-209ENST00000466781 RAB3GAP2Q9H2M9 1393 aa10.95□□□□□ -0.66
HPS4-209ENST00000466781 NUTM2FA1L443 756 aa10.95□□□□□ -0.66
HPS4-209ENST00000466781 PTMSP20962 102 aa10.95□□□□□ -0.66
HPS4-209ENST00000466781 KTN1Q86UP2 1357 aaKnown RBP10.94□□□□□ -0.66
HPS4-209ENST00000466781 STK31Q9BXU1 1019 aa10.94□□□□□ -0.66
HPS4-209ENST00000466781 POLA1P09884 1462 aaPredicted RBP10.94□□□□□ -0.66
HPS4-209ENST00000466781 CCDC34Q96HJ3 373 aa10.94□□□□□ -0.66
HPS4-209ENST00000466781 RASSF8Q8NHQ8 419 aa10.93□□□□□ -0.66
HPS4-209ENST00000466781 ITPRIPQ8IWB1 547 aa10.93□□□□□ -0.66
HPS4-209ENST00000466781 TOP2BQ02880 1626 aa10.93□□□□□ -0.66
HPS4-209ENST00000466781 SYNJ1O43426 1573 aa10.93□□□□□ -0.66
HPS4-209ENST00000466781 VPS53Q5VIR6 699 aa10.93□□□□□ -0.66
HPS4-209ENST00000466781 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.93□□□□□ -0.66
HPS4-209ENST00000466781 PDE4CQ08493 712 aa10.92□□□□□ -0.66
HPS4-209ENST00000466781 HDAC5Q9UQL6 1122 aa10.92□□□□□ -0.66
HPS4-209ENST00000466781 A0A0U1RQG5 324 aaPredicted RBP10.92□□□□□ -0.66
HPS4-209ENST00000466781 TERF2IPQ9NYB0 399 aa10.92□□□□□ -0.66
HPS4-209ENST00000466781 CCDC144AA2RUR9 1427 aa10.92□□□□□ -0.66
HPS4-209ENST00000466781 TIMELESSQ9UNS1 1208 aa10.92□□□□□ -0.66
HPS4-209ENST00000466781 FRAT2O75474 233 aaPredicted RBP10.91□□□□□ -0.66
HPS4-209ENST00000466781 U2AF1L5P0DN76 240 aaPredicted RBP10.91□□□□□ -0.66
HPS4-209ENST00000466781 U2AF1Q01081 240 aaKnown RBP eCLIP10.91□□□□□ -0.666e-11■■■■□ 21.2
HPS4-209ENST00000466781 GTF2E1P29083 439 aaPredicted RBP10.91□□□□□ -0.66
HPS4-209ENST00000466781 VGFO15240 615 aaPredicted RBP10.91□□□□□ -0.66
HPS4-209ENST00000466781 MARCH6O60337 910 aa10.9□□□□□ -0.66
HPS4-209ENST00000466781 GBP4Q96PP9 640 aa10.9□□□□□ -0.66
HPS4-209ENST00000466781 RTN4Q9NQC3 1192 aaKnown RBP10.9□□□□□ -0.66
HPS4-209ENST00000466781 B4GALNT3Q6L9W6 998 aa10.9□□□□□ -0.66
HPS4-209ENST00000466781 CEP89Q96ST8 783 aa10.9□□□□□ -0.67
HPS4-209ENST00000466781 KRI1Q8N9T8 703 aaKnown RBP10.89□□□□□ -0.67
HPS4-209ENST00000466781 SYAP1Q96A49 352 aaPredicted RBP10.89□□□□□ -0.67
HPS4-209ENST00000466781 MYOM3Q5VTT5 1437 aa10.89□□□□□ -0.67
HPS4-209ENST00000466781 TRIM6-TRIM34B2RNG4 842 aa10.89□□□□□ -0.67
HPS4-209ENST00000466781 RWDD1Q9H446 243 aaPredicted RBP10.89□□□□□ -0.67
HPS4-209ENST00000466781 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.89□□□□□ -0.67
HPS4-209ENST00000466781 EVA1CP58658 441 aa10.88□□□□□ -0.67
HPS4-209ENST00000466781 HECW1Q76N89 1606 aa10.88□□□□□ -0.67
HPS4-209ENST00000466781 TOMM22Q9NS69 142 aa10.88□□□□□ -0.67
HPS4-209ENST00000466781 HMMRO75330 724 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.87□□□□□ -0.67
HPS4-209ENST00000466781 CSPP1Q1MSJ5 1256 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 TRAK1Q9UPV9 953 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 KIF21BO75037 1637 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 AMPHP49418 695 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 EFCAB5A4FU69 1503 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 ERICH3Q5RHP9 1530 aa10.87□□□□□ -0.67
HPS4-209ENST00000466781 AMER1Q5JTC6 1135 aaPredicted RBP10.86□□□□□ -0.67
HPS4-209ENST00000466781 MSH5O43196 834 aa10.86□□□□□ -0.67
HPS4-209ENST00000466781 CASKIN1Q8WXD9 1431 aa10.86□□□□□ -0.67
HPS4-209ENST00000466781 ATF3P18847 181 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 POGZQ7Z3K3 1410 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 PMFBP1Q8TBY8 1022 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 CUL7Q14999 1698 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 LMOD3Q0VAK6 560 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 SLC4A10Q6U841 1118 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 FYCO1Q9BQS8 1478 aa10.85□□□□□ -0.67
HPS4-209ENST00000466781 LTV1Q96GA3 475 aaPredicted RBP10.85□□□□□ -0.67
HPS4-209ENST00000466781 GOLGA6L1Q8N7Z2 621 aa10.84□□□□□ -0.67
HPS4-209ENST00000466781 CTDP1Q9Y5B0 961 aaPredicted RBP10.84□□□□□ -0.67
HPS4-209ENST00000466781 TRIM34Q9BYJ4 488 aa10.84□□□□□ -0.67
HPS4-209ENST00000466781 SMC4Q9NTJ3 1288 aa10.83□□□□□ -0.67
HPS4-209ENST00000466781 TCEAL9Q9UHQ7 104 aa10.83□□□□□ -0.67
HPS4-209ENST00000466781 PLEKHH2Q8IVE3 1493 aa10.83□□□□□ -0.68
HPS4-209ENST00000466781 CCDC146Q8IYE0 955 aa10.83□□□□□ -0.68
HPS4-209ENST00000466781 MAGI1Q96QZ7 1491 aaPredicted RBP10.83□□□□□ -0.68
HPS4-209ENST00000466781 KIF15Q9NS87 1388 aa10.82□□□□□ -0.68
HPS4-209ENST00000466781 TPM3P06753 285 aa10.82□□□□□ -0.68
HPS4-209ENST00000466781 NOL10Q9BSC4 688 aaKnown RBP10.82□□□□□ -0.68
HPS4-209ENST00000466781 USP35Q9P2H5 1018 aa10.82□□□□□ -0.68
HPS4-209ENST00000466781 RALBP1Q15311 655 aa10.82□□□□□ -0.68
HPS4-209ENST00000466781 EVC2Q86UK5 1308 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 L3MBTL2Q969R5 705 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 PSME1Q06323 249 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 AMOTL1Q8IY63 956 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 IQGAP2Q13576 1575 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 MFAP1P55081 439 aaKnown RBP10.81□□□□□ -0.68
HPS4-209ENST00000466781 KIF3AQ9Y496 699 aa10.81□□□□□ -0.68
HPS4-209ENST00000466781 KIF16BQ96L93 1317 aa10.8□□□□□ -0.68
HPS4-209ENST00000466781 EHBP1L1Q8N3D4 1523 aa10.8□□□□□ -0.68
HPS4-209ENST00000466781 ABCA10Q8WWZ4 1543 aa10.8□□□□□ -0.68
HPS4-209ENST00000466781 C1orf141Q5JVX7 400 aa10.8□□□□□ -0.68
HPS4-209ENST00000466781 NCOA2Q15596 1464 aa10.8□□□□□ -0.68
HPS4-209ENST00000466781 TPD52L1Q16890 204 aaPredicted RBP10.8□□□□□ -0.68
HPS4-209ENST00000466781 NOL8Q76FK4 1167 aaKnown RBP10.79□□□□□ -0.68
HPS4-209ENST00000466781 ANO8Q9HCE9 1232 aaPredicted RBP10.79□□□□□ -0.68
HPS4-209ENST00000466781 CWC22Q9HCG8 908 aaKnown RBP10.79□□□□□ -0.68
HPS4-209ENST00000466781 MINK1Q8N4C8 1332 aaPredicted RBP10.79□□□□□ -0.68
HPS4-209ENST00000466781 RCAN3Q9UKA8 241 aa10.79□□□□□ -0.68
HPS4-209ENST00000466781 KIAA0586Q9BVV6 1533 aa10.79□□□□□ -0.68
HPS4-209ENST00000466781 TPM2P07951 284 aa10.79□□□□□ -0.68
HPS4-209ENST00000466781 AKAP17AQ02040 695 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms