RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.62□□□□□ -0.87
CLK1-208ENST00000464454 BCL2L12Q9HB09 334 aa9.61□□□□□ -0.87
CLK1-208ENST00000464454 RBM33Q96EV2 1170 aaKnown RBP9.6□□□□□ -0.87
CLK1-208ENST00000464454 PTPREP23469 700 aa9.59□□□□□ -0.87
CLK1-208ENST00000464454 PBX2P40425 430 aa9.59□□□□□ -0.87
CLK1-208ENST00000464454 RBM26Q5T8P6 1007 aaKnown RBP9.59□□□□□ -0.87
CLK1-208ENST00000464454 ZNF687Q8N1G0 1237 aa9.59□□□□□ -0.87
CLK1-208ENST00000464454 ADAM33Q9BZ11 813 aa9.59□□□□□ -0.87
CLK1-208ENST00000464454 GPIHBP1Q8IV16 184 aa9.58□□□□□ -0.88
CLK1-208ENST00000464454 NUTM2FA1L443 756 aa9.57□□□□□ -0.88
CLK1-208ENST00000464454 C6orf132Q5T0Z8 1188 aa9.57□□□□□ -0.88
CLK1-208ENST00000464454 CERKQ8TCT0 537 aa9.57□□□□□ -0.88
CLK1-208ENST00000464454 PRIM1P49642 420 aaKnown RBP9.56□□□□□ -0.88
CLK1-208ENST00000464454 RNF166Q96A37 237 aaPredicted RBP9.55□□□□□ -0.88
CLK1-208ENST00000464454 PPP1R3GB7ZBB8 358 aa9.54□□□□□ -0.88
CLK1-208ENST00000464454 ARHGAP33O14559 1287 aa9.54□□□□□ -0.88
CLK1-208ENST00000464454 TSR1Q2NL82 804 aaKnown RBP9.54□□□□□ -0.88
CLK1-208ENST00000464454 KCNK17Q96T54 332 aa9.54□□□□□ -0.88
CLK1-208ENST00000464454 FCHSD2O94868 740 aa9.53□□□□□ -0.88
CLK1-208ENST00000464454 PTGDRQ13258 359 aa9.51□□□□□ -0.89
CLK1-208ENST00000464454 CDHR5Q9HBB8 845 aa9.51□□□□□ -0.89
CLK1-208ENST00000464454 MYT1LQ9UL68 1186 aa9.51□□□□□ -0.89
CLK1-208ENST00000464454 HIC1Q14526 733 aa9.5□□□□□ -0.89
CLK1-208ENST00000464454 RBM27Q9P2N5 1060 aaKnown RBP9.49□□□□□ -0.89
CLK1-208ENST00000464454 PSEN2P49810 448 aa9.48□□□□□ -0.89
CLK1-208ENST00000464454 GNPATO15228 680 aa9.47□□□□□ -0.89
CLK1-208ENST00000464454 GPR37O15354 613 aa9.47□□□□□ -0.89
CLK1-208ENST00000464454 COL9A1P20849 921 aa9.47□□□□□ -0.89
CLK1-208ENST00000464454 POTEEQ6S8J3 1075 aa9.47□□□□□ -0.89
CLK1-208ENST00000464454 ZC3H15Q8WU90 426 aaKnown RBP9.47□□□□□ -0.89
CLK1-208ENST00000464454 NPDC1Q9NQX5 325 aaPredicted RBP9.47□□□□□ -0.89
CLK1-208ENST00000464454 AXIN2Q9Y2T1 843 aa9.47□□□□□ -0.89
CLK1-208ENST00000464454 PRSS12P56730 875 aa9.46□□□□□ -0.9
CLK1-208ENST00000464454 SLC4A5Q9BY07 1137 aa9.46□□□□□ -0.9
CLK1-208ENST00000464454 ONECUT3O60422 494 aaPredicted RBP9.45□□□□□ -0.9
CLK1-208ENST00000464454 LSM11P83369 360 aaKnown RBP eCLIP9.45□□□□□ -0.95e-9■■□□□ 11.5
CLK1-208ENST00000464454 ZBED2Q9BTP6 218 aa9.45□□□□□ -0.9
CLK1-208ENST00000464454 TK2O00142 265 aa9.44□□□□□ -0.9
CLK1-208ENST00000464454 CDCA7LQ96GN5 454 aa9.44□□□□□ -0.9
CLK1-208ENST00000464454 ZMYND10O75800 440 aa9.43□□□□□ -0.9
CLK1-208ENST00000464454 DMRTA1Q5VZB9 504 aa9.43□□□□□ -0.9
CLK1-208ENST00000464454 TRIM6-TRIM34B2RNG4 842 aa9.42□□□□□ -0.9
CLK1-208ENST00000464454 TPRNQ4KMQ1 711 aa9.42□□□□□ -0.9
CLK1-208ENST00000464454 PADI6Q6TGC4 694 aa9.41□□□□□ -0.9
CLK1-208ENST00000464454 BARGINQ6ZT62 677 aa9.41□□□□□ -0.9
CLK1-208ENST00000464454 PACS2Q86VP3 889 aa9.41□□□□□ -0.9
CLK1-208ENST00000464454 MAP2K5Q13163 448 aa9.4□□□□□ -0.9
CLK1-208ENST00000464454 TTC13Q8NBP0 860 aa9.4□□□□□ -0.9
CLK1-208ENST00000464454 VPS9D1Q9Y2B5 631 aa9.4□□□□□ -0.9
CLK1-208ENST00000464454 NBPF26B4DH59 902 aa9.39□□□□□ -0.91
CLK1-208ENST00000464454 PROX2Q3B8N5 592 aa9.39□□□□□ -0.91
CLK1-208ENST00000464454 ADGRD1Q6QNK2 874 aa9.39□□□□□ -0.91
CLK1-208ENST00000464454 ANKRD13DQ6ZTN6 518 aa9.39□□□□□ -0.91
CLK1-208ENST00000464454 KRI1Q8N9T8 703 aaKnown RBP9.39□□□□□ -0.91
CLK1-208ENST00000464454 RABGEF1Q9UJ41 708 aa9.39□□□□□ -0.91
CLK1-208ENST00000464454 MINK1Q8N4C8 1332 aaPredicted RBP9.38□□□□□ -0.91
CLK1-208ENST00000464454 NBPF3Q9H094 633 aa9.38□□□□□ -0.91
CLK1-208ENST00000464454 TSKSQ9UJT2 592 aa9.38□□□□□ -0.91
CLK1-208ENST00000464454 OATP04181 439 aa9.36□□□□□ -0.91
CLK1-208ENST00000464454 FECHP22830 423 aa9.36□□□□□ -0.91
CLK1-208ENST00000464454 KIAA1468Q9P260 1216 aa9.36□□□□□ -0.91
CLK1-208ENST00000464454 RBM46Q8TBY0 533 aaKnown RBP9.35□□□□□ -0.91
CLK1-208ENST00000464454 STAC3Q96MF2 364 aa9.35□□□□□ -0.91
CLK1-208ENST00000464454 IRF6O14896 467 aa9.34□□□□□ -0.91
CLK1-208ENST00000464454 FAM198AQ9UFP1 575 aa9.34□□□□□ -0.91
CLK1-208ENST00000464454 PNMA3Q9UL41 463 aa9.34□□□□□ -0.91
CLK1-208ENST00000464454 ADGRG1Q9Y653 693 aa9.34□□□□□ -0.91
CLK1-208ENST00000464454 LAPTM4BQ86VI4 370 aa9.33□□□□□ -0.92
CLK1-208ENST00000464454 TATDN2Q93075 761 aa9.33□□□□□ -0.92
CLK1-208ENST00000464454 BHMG1C9JSJ3 638 aaPredicted RBP9.32□□□□□ -0.92
CLK1-208ENST00000464454 HRO43593 1189 aa9.32□□□□□ -0.92
CLK1-208ENST00000464454 NUDT18Q6ZVK8 323 aa9.32□□□□□ -0.92
CLK1-208ENST00000464454 MRPL50Q8N5N7 158 aaKnown RBP9.32□□□□□ -0.92
CLK1-208ENST00000464454 CCDC102AQ96A19 550 aa9.32□□□□□ -0.92
CLK1-208ENST00000464454 AK7Q96M32 723 aa9.32□□□□□ -0.92
CLK1-208ENST00000464454 FAM98CQ17RN3 349 aaKnown RBP9.3□□□□□ -0.92
CLK1-208ENST00000464454 METTL3Q86U44 580 aaKnown RBP9.3□□□□□ -0.92
CLK1-208ENST00000464454 SLC24A3Q9HC58 644 aa9.3□□□□□ -0.92
CLK1-208ENST00000464454 PXYLP1Q8TE99 480 aa9.29□□□□□ -0.92
CLK1-208ENST00000464454 EYA1Q99502 592 aa9.29□□□□□ -0.92
CLK1-208ENST00000464454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.28□□□□□ -0.92
CLK1-208ENST00000464454 GOLGA8CPA6NN73 597 aa9.28□□□□□ -0.92
CLK1-208ENST00000464454 SEPT9Q9UHD8 586 aaPredicted RBP9.28□□□□□ -0.92
CLK1-208ENST00000464454 PRKCSHP14314 528 aaPredicted RBP9.27□□□□□ -0.93
CLK1-208ENST00000464454 DNAJB2P25686 324 aa9.27□□□□□ -0.93
CLK1-208ENST00000464454 FAM161AQ3B820 660 aa9.27□□□□□ -0.93
CLK1-208ENST00000464454 SMAPO00193 183 aa9.26□□□□□ -0.93
CLK1-208ENST00000464454 HDGFP51858 240 aaKnown RBP9.26□□□□□ -0.93
CLK1-208ENST00000464454 HCSTQ9UBK5 93 aa9.26□□□□□ -0.93
CLK1-208ENST00000464454 C3orf80F5H4A9 247 aa9.25□□□□□ -0.93
CLK1-208ENST00000464454 SLC4A3P48751 1232 aa9.25□□□□□ -0.93
CLK1-208ENST00000464454 RCCD1A6NED2 376 aa9.24□□□□□ -0.93
CLK1-208ENST00000464454 TRIM66O15016 1216 aa9.24□□□□□ -0.93
CLK1-208ENST00000464454 AMHR2Q16671 573 aa9.24□□□□□ -0.93
CLK1-208ENST00000464454 ZFRQ96KR1 1074 aaKnown RBP9.24□□□□□ -0.93
CLK1-208ENST00000464454 ANKK1Q8NFD2 765 aa9.23□□□□□ -0.93
CLK1-208ENST00000464454 CLCN1P35523 988 aa9.22□□□□□ -0.93
CLK1-208ENST00000464454 TMEM134Q9H6X4 195 aa9.22□□□□□ -0.93
CLK1-208ENST00000464454 PHOX2BQ99453 314 aa9.21□□□□□ -0.94
CLK1-208ENST00000464454 TTLL12Q14166 644 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms