RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 KDM5BQ9UGL1 1544 aa8.21□□□□□ -1.1
VPS13D-202ENST00000460333 KIF3BO15066 747 aa8.21□□□□□ -1.1
VPS13D-202ENST00000460333 UPF2Q9HAU5 1272 aaKnown RBP8.2□□□□□ -1.1
VPS13D-202ENST00000460333 CCER2I3L3R5 266 aa8.2□□□□□ -1.1
VPS13D-202ENST00000460333 STAC3Q96MF2 364 aa8.2□□□□□ -1.1
VPS13D-202ENST00000460333 SLC24A1O60721 1099 aa8.2□□□□□ -1.1
VPS13D-202ENST00000460333 RPRD2Q5VT52 1461 aaKnown RBP8.19□□□□□ -1.1
VPS13D-202ENST00000460333 SYCP2Q9BX26 1530 aa8.19□□□□□ -1.1
VPS13D-202ENST00000460333 AFAP1Q8N556 730 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 ASXL2Q76L83 1435 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 SCAPERQ9BY12 1400 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 CNGB1Q14028 1251 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-202ENST00000460333 MYO5CQ9NQX4 1742 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 DUOX2Q9NRD8 1548 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 FANCAO15360 1455 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 CDCA8Q53HL2 280 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 PREX2Q70Z35 1606 aa8.18□□□□□ -1.1
VPS13D-202ENST00000460333 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS13D-202ENST00000460333 C14orf37Q86TY3 774 aa8.17□□□□□ -1.1
VPS13D-202ENST00000460333 ADGRL1O94910 1474 aa8.17□□□□□ -1.1
VPS13D-202ENST00000460333 ERBINQ96RT1 1412 aa8.17□□□□□ -1.1
VPS13D-202ENST00000460333 CD109Q6YHK3 1445 aa8.17□□□□□ -1.1
VPS13D-202ENST00000460333 CDC42BPAQ5VT25 1732 aa8.17□□□□□ -1.1
VPS13D-202ENST00000460333 ROCK2O75116 1388 aaKnown RBP8.17□□□□□ -1.1
VPS13D-202ENST00000460333 ZCCHC11Q5TAX3 1644 aaKnown RBP8.17□□□□□ -1.1
VPS13D-202ENST00000460333 RTEL1-TNFRSF6BF6WH68 1400 aa8.16□□□□□ -1.1
VPS13D-202ENST00000460333 TNNT2P45379 298 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-202ENST00000460333 ERCC6L2Q5T890 1561 aa8.16□□□□□ -1.1
VPS13D-202ENST00000460333 MBD5Q9P267 1494 aa8.15□□□□□ -1.1
VPS13D-202ENST00000460333 GGT6Q6P531 493 aa8.15□□□□□ -1.1
VPS13D-202ENST00000460333 BECN1Q14457 450 aa8.14□□□□□ -1.11
VPS13D-202ENST00000460333 ARAP3Q8WWN8 1544 aa8.14□□□□□ -1.11
VPS13D-202ENST00000460333 SAMD9LQ8IVG5 1584 aa8.14□□□□□ -1.11
VPS13D-202ENST00000460333 PZPP20742 1482 aa8.14□□□□□ -1.11
VPS13D-202ENST00000460333 USP47Q96K76 1375 aa8.14□□□□□ -1.11
VPS13D-202ENST00000460333 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.13□□□□□ -1.11
VPS13D-202ENST00000460333 CANXP27824 592 aaKnown RBP8.13□□□□□ -1.11
VPS13D-202ENST00000460333 TTC37Q6PGP7 1564 aa8.13□□□□□ -1.11
VPS13D-202ENST00000460333 WASHC2CQ9Y4E1 1318 aa8.13□□□□□ -1.11
VPS13D-202ENST00000460333 TMF1P82094 1093 aa8.13□□□□□ -1.11
VPS13D-202ENST00000460333 CROCC2H7BZ55 1655 aa8.13□□□□□ -1.11
VPS13D-202ENST00000460333 FAM69CQ0P6D2 419 aa8.13□□□□□ -1.11
VPS13D-202ENST00000460333 FAM9BQ8IZU0 186 aa8.12□□□□□ -1.11
VPS13D-202ENST00000460333 TRIM44Q96DX7 344 aaPredicted RBP8.12□□□□□ -1.11
VPS13D-202ENST00000460333 MRS2Q9HD23 443 aa8.12□□□□□ -1.11
VPS13D-202ENST00000460333 FAM135AQ9P2D6 1515 aa8.12□□□□□ -1.11
VPS13D-202ENST00000460333 MAST1Q9Y2H9 1570 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 ZNF518AQ6AHZ1 1483 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 TRAPPC8Q9Y2L5 1435 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 EIF3AQ14152 1382 aaKnown RBP8.11□□□□□ -1.11
VPS13D-202ENST00000460333 DHX29Q7Z478 1369 aaKnown RBP8.11□□□□□ -1.11
VPS13D-202ENST00000460333 MLECQ14165 292 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 CFAP74Q9C0B2 1584 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 FANCIQ9NVI1 1328 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 NBPF8Q3BBV2 869 aa8.11□□□□□ -1.11
VPS13D-202ENST00000460333 RTN4Q9NQC3 1192 aaKnown RBP8.11□□□□□ -1.11
VPS13D-202ENST00000460333 KDM6BO15054 1643 aa8.1□□□□□ -1.11
VPS13D-202ENST00000460333 CCDC7Q96M83 1385 aa8.1□□□□□ -1.11
VPS13D-202ENST00000460333 IRX6P78412 446 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-202ENST00000460333 L1TD1Q5T7N2 865 aaKnown RBP8.1□□□□□ -1.11
VPS13D-202ENST00000460333 TMC1Q8TDI8 760 aa8.1□□□□□ -1.11
VPS13D-202ENST00000460333 NAP1L5Q96NT1 182 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-202ENST00000460333 ABCC1P33527 1531 aa8.1□□□□□ -1.11
VPS13D-202ENST00000460333 DENND4BO75064 1496 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-202ENST00000460333 NCLP19338 710 aaKnown RBP8.1□□□□□ -1.11
VPS13D-202ENST00000460333 CDC42BPBQ9Y5S2 1711 aa8.09□□□□□ -1.11
VPS13D-202ENST00000460333 KDM5DQ9BY66 1539 aa8.09□□□□□ -1.11
VPS13D-202ENST00000460333 ARHGEF12Q9NZN5 1544 aa8.09□□□□□ -1.11
VPS13D-202ENST00000460333 PLXNC1O60486 1568 aa8.09□□□□□ -1.11
VPS13D-202ENST00000460333 CNTLNQ9NXG0 1405 aa8.08□□□□□ -1.12
VPS13D-202ENST00000460333 HDGFP51858 240 aaKnown RBP8.08□□□□□ -1.12
VPS13D-202ENST00000460333 USP35Q9P2H5 1018 aa8.08□□□□□ -1.12
VPS13D-202ENST00000460333 ST20-MTHFSA0A0A6YYL1 179 aa8.08□□□□□ -1.12
VPS13D-202ENST00000460333 RSPH6AQ9H0K4 717 aa8.08□□□□□ -1.12
VPS13D-202ENST00000460333 ATP7AQ04656 1500 aa8.08□□□□□ -1.12
VPS13D-202ENST00000460333 HSP90AA1P07900 732 aaKnown RBP8.07□□□□□ -1.12
VPS13D-202ENST00000460333 HAP1P54257 671 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-202ENST00000460333 WASHC2AQ641Q2 1341 aa8.07□□□□□ -1.12
VPS13D-202ENST00000460333 NEO1Q92859 1461 aa8.07□□□□□ -1.12
VPS13D-202ENST00000460333 KIF7Q2M1P5 1343 aa8.07□□□□□ -1.12
VPS13D-202ENST00000460333 RALBP1Q15311 655 aa8.06□□□□□ -1.12
VPS13D-202ENST00000460333 KNSTRNQ9Y448 316 aa8.06□□□□□ -1.12
VPS13D-202ENST00000460333 A2MP01023 1474 aa8.06□□□□□ -1.12
VPS13D-202ENST00000460333 TEX14Q8IWB6 1497 aa8.06□□□□□ -1.12
VPS13D-202ENST00000460333 ABCA9Q8IUA7 1624 aa8.05□□□□□ -1.12
VPS13D-202ENST00000460333 RALGAPBQ86X10 1494 aa8.05□□□□□ -1.12
VPS13D-202ENST00000460333 VGFO15240 615 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-202ENST00000460333 UHRF1BP1Q6BDS2 1440 aa8.05□□□□□ -1.12
VPS13D-202ENST00000460333 RAPGEF3O95398 923 aa8.04□□□□□ -1.12
VPS13D-202ENST00000460333 KTN1Q86UP2 1357 aaKnown RBP8.04□□□□□ -1.12
VPS13D-202ENST00000460333 LAS1LQ9Y4W2 734 aaKnown RBP8.04□□□□□ -1.12
VPS13D-202ENST00000460333 RPGRIP1LQ68CZ1 1315 aa8.04□□□□□ -1.12
VPS13D-202ENST00000460333 PRKRIP1Q9H875 184 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-202ENST00000460333 IPO9Q96P70 1041 aaKnown RBP8.03□□□□□ -1.12
VPS13D-202ENST00000460333 POGZQ7Z3K3 1410 aa8.03□□□□□ -1.12
VPS13D-202ENST00000460333 PPP6R1Q9UPN7 881 aa8.03□□□□□ -1.12
VPS13D-202ENST00000460333 UNC13BO14795 1591 aa8.03□□□□□ -1.12
VPS13D-202ENST00000460333 GOLGA6L22H0YM25 854 aa8.03□□□□□ -1.12
VPS13D-202ENST00000460333 EIF2AK4Q9P2K8 1649 aaKnown RBP8.02□□□□□ -1.13
VPS13D-202ENST00000460333 SLC52A1Q9NWF4 448 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms