RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 HNRNPMP52272 730 aaKnown RBP eCLIP25.41■■□□□ 1.66
HMGA1-205ENST00000447654 NPM2Q86SE8 214 aaKnown RBP25.41■■□□□ 1.66
HMGA1-205ENST00000447654 ZMYND15Q9H091 742 aa25.41■■□□□ 1.66
HMGA1-205ENST00000447654 ANKRD30AQ9BXX3 1397 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 RIMBP3CA6NJZ7 1639 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 RIMBP3BA6NNM3 1639 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 RIMBP3Q9UFD9 1639 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 CDC42BPBQ9Y5S2 1711 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 RPRD2Q5VT52 1461 aaKnown RBP25.38■■□□□ 1.65
HMGA1-205ENST00000447654 C9orf84Q5VXU9 1444 aa25.38■■□□□ 1.65
HMGA1-205ENST00000447654 HSPA5P11021 654 aaKnown RBP25.37■■□□□ 1.65
HMGA1-205ENST00000447654 MBD5Q9P267 1494 aa25.37■■□□□ 1.65
HMGA1-205ENST00000447654 ANKRD50Q9ULJ7 1429 aa25.35■■□□□ 1.65
HMGA1-205ENST00000447654 CLASP1Q7Z460 1538 aa25.35■■□□□ 1.65
HMGA1-205ENST00000447654 EIF4G2P78344 907 aaKnown RBP eCLIP25.35■■□□□ 1.65
HMGA1-205ENST00000447654 SAMD9LQ8IVG5 1584 aa25.34■■□□□ 1.65
HMGA1-205ENST00000447654 ABCC2Q92887 1545 aa25.33■■□□□ 1.65
HMGA1-205ENST00000447654 TTC37Q6PGP7 1564 aa25.33■■□□□ 1.65
HMGA1-205ENST00000447654 TEX14Q8IWB6 1497 aa25.33■■□□□ 1.65
HMGA1-205ENST00000447654 SHANK2Q9UPX8 1470 aa25.33■■□□□ 1.65
HMGA1-205ENST00000447654 CCDC7Q96M83 1385 aa25.33■■□□□ 1.65
HMGA1-205ENST00000447654 POLR1AO95602 1720 aaPredicted RBP25.33■■□□□ 1.65
HMGA1-205ENST00000447654 RRP9O43818 475 aaKnown RBP25.32■■□□□ 1.64
HMGA1-205ENST00000447654 PREX2Q70Z35 1606 aa25.32■■□□□ 1.64
HMGA1-205ENST00000447654 NBPF8Q3BBV2 869 aa25.32■■□□□ 1.64
HMGA1-205ENST00000447654 VSIG10Q8N0Z9 540 aa25.3■■□□□ 1.64
HMGA1-205ENST00000447654 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.3■■□□□ 1.648e-9■■■■□ 20.1
HMGA1-205ENST00000447654 TSPY4P0CV99 314 aa25.28■■□□□ 1.64
HMGA1-205ENST00000447654 TSPY10P0CW01 314 aa25.28■■□□□ 1.64
HMGA1-205ENST00000447654 PKD2Q13563 968 aa25.28■■□□□ 1.64
HMGA1-205ENST00000447654 ARHGEF5Q12774 1597 aa25.27■■□□□ 1.64
HMGA1-205ENST00000447654 KIAA1107Q9UPP5 1409 aa25.25■■□□□ 1.63
HMGA1-205ENST00000447654 KIF15Q9NS87 1388 aa25.25■■□□□ 1.63
HMGA1-205ENST00000447654 PODXL2Q9NZ53 605 aa25.25■■□□□ 1.63
HMGA1-205ENST00000447654 DAXXQ9UER7 740 aaPredicted RBP25.24■■□□□ 1.63
HMGA1-205ENST00000447654 NUP155O75694 1391 aa25.23■■□□□ 1.63
HMGA1-205ENST00000447654 SYCP2Q9BX26 1530 aa25.22■■□□□ 1.63
HMGA1-205ENST00000447654 CCDC141Q6ZP82 1450 aa25.22■■□□□ 1.63
HMGA1-205ENST00000447654 ARHGAP5Q13017 1502 aa25.21■■□□□ 1.63
HMGA1-205ENST00000447654 ZCCHC11Q5TAX3 1644 aaKnown RBP25.2■■□□□ 1.62
HMGA1-205ENST00000447654 HSP90AA2PQ14568 343 aaPredicted RBP25.2■■□□□ 1.62
HMGA1-205ENST00000447654 DCAF11Q8TEB1 546 aa25.18■■□□□ 1.62
HMGA1-205ENST00000447654 RRP1P56182 461 aaKnown RBP25.17■■□□□ 1.62
HMGA1-205ENST00000447654 L1TD1Q5T7N2 865 aaKnown RBP25.15■■□□□ 1.62
HMGA1-205ENST00000447654 ARHGEF12Q9NZN5 1544 aa25.15■■□□□ 1.62
HMGA1-205ENST00000447654 MYO5CQ9NQX4 1742 aa25.14■■□□□ 1.61
HMGA1-205ENST00000447654 UHRF1BP1LA0JNW5 1464 aa25.14■■□□□ 1.61
HMGA1-205ENST00000447654 KDM5DQ9BY66 1539 aa25.14■■□□□ 1.61
HMGA1-205ENST00000447654 SLC24A1O60721 1099 aa25.14■■□□□ 1.61
HMGA1-205ENST00000447654 HSP90AA1P07900 732 aaKnown RBP25.12■■□□□ 1.61
HMGA1-205ENST00000447654 RSPH4AQ5TD94 716 aa25.1■■□□□ 1.61
HMGA1-205ENST00000447654 SPATA31E1Q6ZUB1 1445 aa25.1■■□□□ 1.61
HMGA1-205ENST00000447654 RRAGDQ9NQL2 400 aaPredicted RBP25.09■■□□□ 1.61
HMGA1-205ENST00000447654 EXOC6Q8TAG9 804 aa25.07■■□□□ 1.6
HMGA1-205ENST00000447654 PLCH2O75038 1416 aa25.07■■□□□ 1.6
HMGA1-205ENST00000447654 MAST1Q9Y2H9 1570 aa25.06■■□□□ 1.6
HMGA1-205ENST00000447654 CLCN1P35523 988 aa25.05■■□□□ 1.6
HMGA1-205ENST00000447654 ZNF326Q5BKZ1 582 aaKnown RBP25.05■■□□□ 1.6
HMGA1-205ENST00000447654 FAM135AQ9P2D6 1515 aa25.04■■□□□ 1.6
HMGA1-205ENST00000447654 FRAT2O75474 233 aaPredicted RBP25.03■■□□□ 1.6
HMGA1-205ENST00000447654 CYB5RLQ6IPT4 315 aa25.03■■□□□ 1.6
HMGA1-205ENST00000447654 PNNQ9H307 717 aaKnown RBP25.03■■□□□ 1.6
HMGA1-205ENST00000447654 DHX29Q7Z478 1369 aaKnown RBP25.02■■□□□ 1.6
HMGA1-205ENST00000447654 PLEKHH2Q8IVE3 1493 aa25.01■■□□□ 1.59
HMGA1-205ENST00000447654 KIF7Q2M1P5 1343 aa25.01■■□□□ 1.59
HMGA1-205ENST00000447654 CENPJQ9HC77 1338 aaPredicted RBP25.01■■□□□ 1.59
HMGA1-205ENST00000447654 TRAPPC8Q9Y2L5 1435 aa25■■□□□ 1.59
HMGA1-205ENST00000447654 PDE3BQ13370 1112 aa24.99■■□□□ 1.59
HMGA1-205ENST00000447654 PNISRQ8TF01 805 aaKnown RBP24.99■■□□□ 1.59
HMGA1-205ENST00000447654 LRPPRCP42704 1394 aaKnown RBP24.99■■□□□ 1.59
HMGA1-205ENST00000447654 EFCAB2Q5VUJ9 269 aa24.98■■□□□ 1.59
HMGA1-205ENST00000447654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.98■■□□□ 1.592e-6■■□□□ 14.5
HMGA1-205ENST00000447654 RCAN3Q9UKA8 241 aa24.98■■□□□ 1.59
HMGA1-205ENST00000447654 PLXNC1O60486 1568 aa24.98■■□□□ 1.59
HMGA1-205ENST00000447654 NAP1L5Q96NT1 182 aaPredicted RBP24.98■■□□□ 1.59
HMGA1-205ENST00000447654 ABCC1P33527 1531 aa24.97■■□□□ 1.59
HMGA1-205ENST00000447654 UNC13BO14795 1591 aa24.96■■□□□ 1.59
HMGA1-205ENST00000447654 ARID4BQ4LE39 1312 aaPredicted RBP24.96■■□□□ 1.59
HMGA1-205ENST00000447654 PLA2R1Q13018 1463 aa24.95■■□□□ 1.58
HMGA1-205ENST00000447654 PLEKHG5O94827 1062 aa24.94■■□□□ 1.58
HMGA1-205ENST00000447654 UHRF1BP1Q6BDS2 1440 aa24.93■■□□□ 1.58
HMGA1-205ENST00000447654 KDM2AQ9Y2K7 1162 aa24.93■■□□□ 1.58
HMGA1-205ENST00000447654 KTN1Q86UP2 1357 aaKnown RBP24.92■■□□□ 1.58
HMGA1-205ENST00000447654 AFAP1Q8N556 730 aa24.92■■□□□ 1.58
HMGA1-205ENST00000447654 USP47Q96K76 1375 aa24.92■■□□□ 1.58
HMGA1-205ENST00000447654 FAM161AQ3B820 660 aa24.91■■□□□ 1.58
HMGA1-205ENST00000447654 BCORL1Q5H9F3 1711 aa24.91■■□□□ 1.58
HMGA1-205ENST00000447654 WDR7Q9Y4E6 1490 aa24.91■■□□□ 1.58
HMGA1-205ENST00000447654 DUOX2Q9NRD8 1548 aa24.9■■□□□ 1.58
HMGA1-205ENST00000447654 KDM5CP41229 1560 aa24.89■■□□□ 1.57
HMGA1-205ENST00000447654 SLC4A3P48751 1232 aa24.88■■□□□ 1.57
HMGA1-205ENST00000447654 IQGAP3Q86VI3 1631 aa24.87■■□□□ 1.57
HMGA1-205ENST00000447654 RALGAPBQ86X10 1494 aa24.86■■□□□ 1.57
HMGA1-205ENST00000447654 BRD4O60885 1362 aaPredicted RBP24.86■■□□□ 1.57
HMGA1-205ENST00000447654 TRHP20396 242 aaPredicted RBP24.86■■□□□ 1.57
HMGA1-205ENST00000447654 ROCK2O75116 1388 aaKnown RBP24.85■■□□□ 1.57
HMGA1-205ENST00000447654 MAGI2Q86UL8 1455 aa24.85■■□□□ 1.57
HMGA1-205ENST00000447654 ERBINQ96RT1 1412 aa24.85■■□□□ 1.57
HMGA1-205ENST00000447654 CALD1Q05682 793 aaKnown RBP24.84■■□□□ 1.57
HMGA1-205ENST00000447654 CCDC144AA2RUR9 1427 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms