RNA–Protein interactions for RNA: ENST00000447267.4

SDCBP-205, Transcript of syndecan binding protein, humanhuman

TSL 3 BASIC

Gene SDCBP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-205ENST00000447267 SPNS2Q8IVW8 549 aa10.05□□□□□ -0.8
SDCBP-205ENST00000447267 TMC2Q8TDI7 906 aa10.04□□□□□ -0.8
SDCBP-205ENST00000447267 SOGA1O94964 1423 aa10.04□□□□□ -0.8
SDCBP-205ENST00000447267 POLA1P09884 1462 aaPredicted RBP10.03□□□□□ -0.8
SDCBP-205ENST00000447267 MAGI1Q96QZ7 1491 aaPredicted RBP10.03□□□□□ -0.8
SDCBP-205ENST00000447267 SLC34A2O95436 690 aa10.01□□□□□ -0.81
SDCBP-205ENST00000447267 DSG2Q14126 1118 aa10.01□□□□□ -0.81
SDCBP-205ENST00000447267 GPHNQ9NQX3 736 aaPredicted RBP10.01□□□□□ -0.81
SDCBP-205ENST00000447267 PCDHGA4Q9Y5G9 962 aa10.01□□□□□ -0.81
SDCBP-205ENST00000447267 CEP170Q5SW79 1584 aa10.01□□□□□ -0.81
SDCBP-205ENST00000447267 ABCC8Q09428 1581 aa10□□□□□ -0.81
SDCBP-205ENST00000447267 WIZO95785 1651 aa9.99□□□□□ -0.81
SDCBP-205ENST00000447267 NUDT7P0C024 238 aa9.99□□□□□ -0.81
SDCBP-205ENST00000447267 FOXK1P85037 733 aa9.99□□□□□ -0.81
SDCBP-205ENST00000447267 MMRN1Q13201 1228 aa9.99□□□□□ -0.81
SDCBP-205ENST00000447267 GRIN2BQ13224 1484 aa9.98□□□□□ -0.81
SDCBP-205ENST00000447267 MAPKBP1O60336 1514 aa9.98□□□□□ -0.81
SDCBP-205ENST00000447267 DNMBPQ6XZF7 1577 aa9.98□□□□□ -0.81
SDCBP-205ENST00000447267 PLPP6Q8IY26 295 aa9.98□□□□□ -0.81
SDCBP-205ENST00000447267 NCKAP5LQ9HCH0 1330 aa9.98□□□□□ -0.81
SDCBP-205ENST00000447267 ZNF316A6NFI3 1004 aaPredicted RBP9.97□□□□□ -0.81
SDCBP-205ENST00000447267 CRISPLD2Q9H0B8 497 aa9.97□□□□□ -0.81
SDCBP-205ENST00000447267 TOP2BQ02880 1626 aa9.96□□□□□ -0.81
SDCBP-205ENST00000447267 RTN4Q9NQC3 1192 aaKnown RBP9.96□□□□□ -0.82
SDCBP-205ENST00000447267 ZNF687Q8N1G0 1237 aa9.95□□□□□ -0.82
SDCBP-205ENST00000447267 PRG4Q92954 1404 aaPredicted RBP9.94□□□□□ -0.82
SDCBP-205ENST00000447267 POTEEQ6S8J3 1075 aa9.94□□□□□ -0.82
SDCBP-205ENST00000447267 PTCD2Q8WV60 388 aaKnown RBP9.94□□□□□ -0.82
SDCBP-205ENST00000447267 LHX6Q9UPM6 363 aa9.94□□□□□ -0.82
SDCBP-205ENST00000447267 CADPS2Q86UW7 1296 aa9.93□□□□□ -0.82
SDCBP-205ENST00000447267 PTPRMP28827 1452 aa9.92□□□□□ -0.82
SDCBP-205ENST00000447267 JPH4Q96JJ6 628 aa9.91□□□□□ -0.82
SDCBP-205ENST00000447267 RYDENQ9NUL5 291 aaKnown RBP9.91□□□□□ -0.82
SDCBP-205ENST00000447267 PCF11O94913 1555 aaKnown RBP9.91□□□□□ -0.82
SDCBP-205ENST00000447267 PPP1R15BQ5SWA1 713 aa9.87□□□□□ -0.83
SDCBP-205ENST00000447267 OXER1Q8TDS5 423 aa9.87□□□□□ -0.83
SDCBP-205ENST00000447267 NUP160Q12769 1436 aa9.86□□□□□ -0.83
SDCBP-205ENST00000447267 AMER1Q5JTC6 1135 aaPredicted RBP9.85□□□□□ -0.83
SDCBP-205ENST00000447267 AXIN2Q9Y2T1 843 aa9.85□□□□□ -0.83
SDCBP-205ENST00000447267 PPRC1Q5VV67 1664 aaKnown RBP9.85□□□□□ -0.83
SDCBP-205ENST00000447267 ADCY10Q96PN6 1610 aa9.85□□□□□ -0.83
SDCBP-205ENST00000447267 GRIN2AQ12879 1464 aa9.85□□□□□ -0.83
SDCBP-205ENST00000447267 TTBK1Q5TCY1 1321 aaPredicted RBP9.84□□□□□ -0.83
SDCBP-205ENST00000447267 UPF1Q92900 1129 aaKnown RBP eCLIP9.84□□□□□ -0.83
SDCBP-205ENST00000447267 MFSD10Q14728 455 aa9.83□□□□□ -0.84
SDCBP-205ENST00000447267 LARP6Q9BRS8 491 aaKnown RBP9.83□□□□□ -0.84
SDCBP-205ENST00000447267 FGD5Q6ZNL6 1462 aa9.83□□□□□ -0.84
SDCBP-205ENST00000447267 SHROOM2Q13796 1616 aa9.82□□□□□ -0.84
SDCBP-205ENST00000447267 PDE4AP27815 886 aa9.82□□□□□ -0.84
SDCBP-205ENST00000447267 LSM11P83369 360 aaKnown RBP eCLIP9.81□□□□□ -0.84
SDCBP-205ENST00000447267 BBXQ8WY36 941 aaPredicted RBP9.81□□□□□ -0.84
SDCBP-205ENST00000447267 PRDM2Q13029 1718 aa9.8□□□□□ -0.84
SDCBP-205ENST00000447267 EMILIN3Q9NT22 766 aa9.79□□□□□ -0.84
SDCBP-205ENST00000447267 ASXL2Q76L83 1435 aa9.79□□□□□ -0.84
SDCBP-205ENST00000447267 ANKRD13DQ6ZTN6 518 aa9.78□□□□□ -0.84
SDCBP-205ENST00000447267 CCDC88BA6NC98 1476 aa9.78□□□□□ -0.84
SDCBP-205ENST00000447267 UBAP1LF5GYI3 381 aa9.77□□□□□ -0.85
SDCBP-205ENST00000447267 DDX27Q96GQ7 796 aaKnown RBP9.77□□□□□ -0.85
SDCBP-205ENST00000447267 WDR97A6NE52 1622 aa9.77□□□□□ -0.85
SDCBP-205ENST00000447267 KIF21BO75037 1637 aa9.76□□□□□ -0.85
SDCBP-205ENST00000447267 PSEN2P49810 448 aa9.76□□□□□ -0.85
SDCBP-205ENST00000447267 ARID4BQ4LE39 1312 aaPredicted RBP9.76□□□□□ -0.85
SDCBP-205ENST00000447267 PBX2P40425 430 aa9.75□□□□□ -0.85
SDCBP-205ENST00000447267 DMRTA1Q5VZB9 504 aa9.75□□□□□ -0.85
SDCBP-205ENST00000447267 TOP2AP11388 1531 aaKnown RBP9.74□□□□□ -0.85
SDCBP-205ENST00000447267 TBC1D12O60347 775 aa9.74□□□□□ -0.85
SDCBP-205ENST00000447267 HSPA1LP34931 641 aa9.74□□□□□ -0.85
SDCBP-205ENST00000447267 GLI2P10070 1586 aa9.74□□□□□ -0.85
SDCBP-205ENST00000447267 MED1Q15648 1581 aaPredicted RBP9.74□□□□□ -0.85
SDCBP-205ENST00000447267 MYT1LQ9UL68 1186 aa9.73□□□□□ -0.85
SDCBP-205ENST00000447267 PLB1Q6P1J6 1458 aa9.72□□□□□ -0.85
SDCBP-205ENST00000447267 TEX14Q8IWB6 1497 aa9.72□□□□□ -0.85
SDCBP-205ENST00000447267 ADAMTSL3P82987 1691 aa9.72□□□□□ -0.85
SDCBP-205ENST00000447267 ARHGAP33O14559 1287 aa9.72□□□□□ -0.85
SDCBP-205ENST00000447267 RNF166Q96A37 237 aaPredicted RBP9.72□□□□□ -0.85
SDCBP-205ENST00000447267 ANO8Q9HCE9 1232 aaPredicted RBP9.72□□□□□ -0.85
SDCBP-205ENST00000447267 PBRM1Q86U86 1689 aa9.71□□□□□ -0.85
SDCBP-205ENST00000447267 PSDA5PKW4 1024 aaPredicted RBP9.71□□□□□ -0.86
SDCBP-205ENST00000447267 EVI5O60447 810 aa9.7□□□□□ -0.86
SDCBP-205ENST00000447267 FOSBP53539 338 aa9.7□□□□□ -0.86
SDCBP-205ENST00000447267 CAMK2BQ13554 666 aa9.69□□□□□ -0.86
SDCBP-205ENST00000447267 PPP4R3BQ5MIZ7 849 aa9.69□□□□□ -0.86
SDCBP-205ENST00000447267 ZNF454Q8N9F8 522 aa9.69□□□□□ -0.86
SDCBP-205ENST00000447267 EPRSP07814 1512 aaKnown RBP9.68□□□□□ -0.86
SDCBP-205ENST00000447267 YEATS2Q9ULM3 1422 aa9.68□□□□□ -0.86
SDCBP-205ENST00000447267 ADGRD1Q6QNK2 874 aa9.68□□□□□ -0.86
SDCBP-205ENST00000447267 SPRYD3Q8NCJ5 442 aa9.68□□□□□ -0.86
SDCBP-205ENST00000447267 KCNK17Q96T54 332 aa9.67□□□□□ -0.86
SDCBP-205ENST00000447267 RGS17Q9UGC6 210 aaPredicted RBP9.67□□□□□ -0.86
SDCBP-205ENST00000447267 HRO43593 1189 aa9.66□□□□□ -0.86
SDCBP-205ENST00000447267 MADDQ8WXG6 1647 aa9.66□□□□□ -0.86
SDCBP-205ENST00000447267 FHAD1B1AJZ9 1412 aa9.65□□□□□ -0.86
SDCBP-205ENST00000447267 PTPRGP23470 1445 aa9.65□□□□□ -0.86
SDCBP-205ENST00000447267 PIP4K2BP78356 416 aa9.65□□□□□ -0.86
SDCBP-205ENST00000447267 PAXIP1Q6ZW49 1069 aaPredicted RBP9.65□□□□□ -0.86
SDCBP-205ENST00000447267 CUX1P39880 1505 aa9.65□□□□□ -0.86
SDCBP-205ENST00000447267 ABCC2Q92887 1545 aa9.65□□□□□ -0.86
SDCBP-205ENST00000447267 PTGER2P43116 358 aa9.64□□□□□ -0.87
SDCBP-205ENST00000447267 MAP3K9P80192 1104 aa9.64□□□□□ -0.87
SDCBP-205ENST00000447267 ADAM33Q9BZ11 813 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms