RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 SHANK2Q9UPX8 1470 aa18.25■□□□□ 0.51
HERPUD1-204ENST00000439977 CCDC144AA2RUR9 1427 aa18.24■□□□□ 0.51
HERPUD1-204ENST00000439977 MYBBP1AQ9BQG0 1328 aaKnown RBP18.24■□□□□ 0.51
HERPUD1-204ENST00000439977 POLR1AO95602 1720 aaPredicted RBP18.24■□□□□ 0.51
HERPUD1-204ENST00000439977 CCDC141Q6ZP82 1450 aa18.22■□□□□ 0.51
HERPUD1-204ENST00000439977 FAM135AQ9P2D6 1515 aa18.21■□□□□ 0.51
HERPUD1-204ENST00000439977 RALBP1Q15311 655 aa18.21■□□□□ 0.51
HERPUD1-204ENST00000439977 SAMD9LQ8IVG5 1584 aa18.19■□□□□ 0.5
HERPUD1-204ENST00000439977 ARHGEF12Q9NZN5 1544 aa18.19■□□□□ 0.5
HERPUD1-204ENST00000439977 SYCP2Q9BX26 1530 aa18.18■□□□□ 0.5
HERPUD1-204ENST00000439977 CDCA7LQ96GN5 454 aa18.18■□□□□ 0.5
HERPUD1-204ENST00000439977 ARHGAP5Q13017 1502 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 PLEKHH2Q8IVE3 1493 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 RSPH4AQ5TD94 716 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 PANK3Q9H999 370 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 PRAG1Q86YV5 1406 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 RNF123Q5XPI4 1314 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 PLA2R1Q13018 1463 aa18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 BRD4O60885 1362 aaPredicted RBP18.17■□□□□ 0.5
HERPUD1-204ENST00000439977 NLRP13Q86W25 1043 aa18.16■□□□□ 0.5
HERPUD1-204ENST00000439977 PER1O15534 1290 aaPredicted RBP18.16■□□□□ 0.5
HERPUD1-204ENST00000439977 KTN1Q86UP2 1357 aaKnown RBP18.16■□□□□ 0.5
HERPUD1-204ENST00000439977 DISP3Q9P2K9 1392 aa18.16■□□□□ 0.5
HERPUD1-204ENST00000439977 KDM5DQ9BY66 1539 aa18.15■□□□□ 0.5
HERPUD1-204ENST00000439977 LRPPRCP42704 1394 aaKnown RBP18.15■□□□□ 0.5
HERPUD1-204ENST00000439977 EXOC6Q8TAG9 804 aa18.15■□□□□ 0.5
HERPUD1-204ENST00000439977 TESK2Q96S53 571 aa18.14■□□□□ 0.49
HERPUD1-204ENST00000439977 RCAN3Q9UKA8 241 aa18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 ARHGEF5Q12774 1597 aa18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 CDC42BPBQ9Y5S2 1711 aa18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 A2MP01023 1474 aa18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 PLIN1O60240 522 aa18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 RRP1P56182 461 aaKnown RBP18.12■□□□□ 0.49
HERPUD1-204ENST00000439977 PAK3O75914 559 aaPredicted RBP18.11■□□□□ 0.49
HERPUD1-204ENST00000439977 TTC37Q6PGP7 1564 aa18.1■□□□□ 0.49
HERPUD1-204ENST00000439977 ERCC6L2Q5T890 1561 aa18.09■□□□□ 0.49
HERPUD1-204ENST00000439977 AFAP1Q8N556 730 aa18.09■□□□□ 0.49
HERPUD1-204ENST00000439977 PARD3Q8TEW0 1356 aa18.09■□□□□ 0.49
HERPUD1-204ENST00000439977 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.08■□□□□ 0.496e-6■■■■□ 21.5
HERPUD1-204ENST00000439977 TMF1P82094 1093 aa18.08■□□□□ 0.48
HERPUD1-204ENST00000439977 NBR1Q14596 966 aa18.07■□□□□ 0.48
HERPUD1-204ENST00000439977 PREX2Q70Z35 1606 aa18.07■□□□□ 0.48
HERPUD1-204ENST00000439977 MYT1LQ9UL68 1186 aa18.06■□□□□ 0.48
HERPUD1-204ENST00000439977 EFCAB2Q5VUJ9 269 aa18.05■□□□□ 0.48
HERPUD1-204ENST00000439977 SKAP1Q86WV1 359 aa18.05■□□□□ 0.48
HERPUD1-204ENST00000439977 NPM2Q86SE8 214 aaKnown RBP18.05■□□□□ 0.48
HERPUD1-204ENST00000439977 NOP58Q9Y2X3 529 aaKnown RBP18.04■□□□□ 0.48
HERPUD1-204ENST00000439977 ERBINQ96RT1 1412 aa18.04■□□□□ 0.48
HERPUD1-204ENST00000439977 TRPM1Q7Z4N2 1603 aa18.03■□□□□ 0.48
HERPUD1-204ENST00000439977 ADAMTS8Q9UP79 889 aa18.02■□□□□ 0.48
HERPUD1-204ENST00000439977 GPRASP1Q5JY77 1395 aa18.02■□□□□ 0.48
HERPUD1-204ENST00000439977 TRAPPC8Q9Y2L5 1435 aa18.01■□□□□ 0.47
HERPUD1-204ENST00000439977 BCL11AQ9H165 835 aa18.01■□□□□ 0.47
HERPUD1-204ENST00000439977 COL17A1Q9UMD9 1497 aaPredicted RBP18■□□□□ 0.47
HERPUD1-204ENST00000439977 ANP32AP39687 249 aaKnown RBP18■□□□□ 0.47
HERPUD1-204ENST00000439977 SPAG9O60271 1321 aaKnown RBP17.99■□□□□ 0.47
HERPUD1-204ENST00000439977 KNSTRNQ9Y448 316 aa17.99■□□□□ 0.47
HERPUD1-204ENST00000439977 PDE3BQ13370 1112 aa17.97■□□□□ 0.47
HERPUD1-204ENST00000439977 CHD1O14646 1710 aa17.97■□□□□ 0.47
HERPUD1-204ENST00000439977 E9PCH4 1651 aa17.97■□□□□ 0.47
HERPUD1-204ENST00000439977 PLCH2O75038 1416 aa17.96■□□□□ 0.47
HERPUD1-204ENST00000439977 C20orf194Q5TEA3 1177 aa17.96■□□□□ 0.47
HERPUD1-204ENST00000439977 CRBNQ96SW2 442 aa17.95■□□□□ 0.46
HERPUD1-204ENST00000439977 ABCC2Q92887 1545 aa17.95■□□□□ 0.46
HERPUD1-204ENST00000439977 UNC13BO14795 1591 aa17.95■□□□□ 0.46
HERPUD1-204ENST00000439977 IPO9Q96P70 1041 aaKnown RBP17.95■□□□□ 0.46
HERPUD1-204ENST00000439977 DUOX2Q9NRD8 1548 aa17.94■□□□□ 0.46
HERPUD1-204ENST00000439977 PRDM15P57071 1507 aaPredicted RBP17.94■□□□□ 0.46
HERPUD1-204ENST00000439977 PPP2R1AP30153 589 aa17.94■□□□□ 0.46
HERPUD1-204ENST00000439977 WASHC2CQ9Y4E1 1318 aa17.94■□□□□ 0.46
HERPUD1-204ENST00000439977 KIF3BO15066 747 aa17.93■□□□□ 0.46
HERPUD1-204ENST00000439977 WDR43Q15061 677 aaKnown RBP eCLIP17.93■□□□□ 0.46
HERPUD1-204ENST00000439977 CCDC146Q8IYE0 955 aa17.93■□□□□ 0.46
HERPUD1-204ENST00000439977 ZBTB47Q9UFB7 747 aaPredicted RBP17.93■□□□□ 0.46
HERPUD1-204ENST00000439977 MAGI2Q86UL8 1455 aa17.92■□□□□ 0.46
HERPUD1-204ENST00000439977 MAST1Q9Y2H9 1570 aa17.91■□□□□ 0.46
HERPUD1-204ENST00000439977 IQGAP3Q86VI3 1631 aa17.91■□□□□ 0.46
HERPUD1-204ENST00000439977 PDE4AP27815 886 aa17.9■□□□□ 0.46
HERPUD1-204ENST00000439977 AMER1Q5JTC6 1135 aaPredicted RBP17.9■□□□□ 0.46
HERPUD1-204ENST00000439977 CFAP70Q5T0N1 1121 aa17.9■□□□□ 0.46
HERPUD1-204ENST00000439977 MYO5CQ9NQX4 1742 aa17.89■□□□□ 0.46
HERPUD1-204ENST00000439977 PLXNC1O60486 1568 aa17.88■□□□□ 0.45
HERPUD1-204ENST00000439977 DEKP35659 375 aaKnown RBP17.88■□□□□ 0.45
HERPUD1-204ENST00000439977 PLEKHH1Q9ULM0 1364 aa17.87■□□□□ 0.45
HERPUD1-204ENST00000439977 WDR7Q9Y4E6 1490 aa17.87■□□□□ 0.45
HERPUD1-204ENST00000439977 ATP10AO60312 1499 aa17.86■□□□□ 0.45
HERPUD1-204ENST00000439977 TCERG1O14776 1098 aaKnown RBP17.86■□□□□ 0.45
HERPUD1-204ENST00000439977 BLMP54132 1417 aaPredicted RBP17.86■□□□□ 0.45
HERPUD1-204ENST00000439977 CHGAP10645 457 aaKnown RBP17.86■□□□□ 0.45
HERPUD1-204ENST00000439977 SHROOM2Q13796 1616 aa17.84■□□□□ 0.45
HERPUD1-204ENST00000439977 DUSP27Q5VZP5 1158 aa17.84■□□□□ 0.45
HERPUD1-204ENST00000439977 SCAPERQ9BY12 1400 aa17.84■□□□□ 0.45
HERPUD1-204ENST00000439977 ADGRF5Q8IZF2 1346 aa17.83■□□□□ 0.45
HERPUD1-204ENST00000439977 SENP3Q9H4L4 574 aaPredicted RBP17.83■□□□□ 0.45
HERPUD1-204ENST00000439977 BACH2Q9BYV9 841 aa17.83■□□□□ 0.44
HERPUD1-204ENST00000439977 EIF2AK4Q9P2K8 1649 aaKnown RBP17.83■□□□□ 0.44
HERPUD1-204ENST00000439977 ABCC1P33527 1531 aa17.82■□□□□ 0.44
HERPUD1-204ENST00000439977 APAF1O14727 1248 aa17.82■□□□□ 0.44
HERPUD1-204ENST00000439977 CDCA8Q53HL2 280 aa17.82■□□□□ 0.44
HERPUD1-204ENST00000439977 TNNT2P45379 298 aaPredicted RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms