RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 CC2D2AQ9P2K1 1620 aa14.96□□□□□ -0.01
HMGCS1-202ENST00000433297 PZPP20742 1482 aa14.96□□□□□ -0.02
HMGCS1-202ENST00000433297 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.96□□□□□ -0.02
HMGCS1-202ENST00000433297 SAMD9Q5K651 1589 aa14.95□□□□□ -0.02
HMGCS1-202ENST00000433297 NUP155O75694 1391 aa14.95□□□□□ -0.02
HMGCS1-202ENST00000433297 WDR43Q15061 677 aaKnown RBP eCLIP14.95□□□□□ -0.021e-23■□□□□ 9.7
HMGCS1-202ENST00000433297 KDM5CP41229 1560 aa14.95□□□□□ -0.02
HMGCS1-202ENST00000433297 PKNOX2Q96KN3 472 aa14.94□□□□□ -0.02
HMGCS1-202ENST00000433297 NBPF1Q3BBV0 1214 aa14.94□□□□□ -0.02
HMGCS1-202ENST00000433297 VSIG10Q8N0Z9 540 aa14.94□□□□□ -0.02
HMGCS1-202ENST00000433297 THOC2Q8NI27 1593 aaKnown RBP14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 PER1O15534 1290 aaPredicted RBP14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 PRDM2Q13029 1718 aa14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 SEC24BO95487 1268 aa14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 GLIPR1L2Q4G1C9 344 aa14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 PARD3Q8TEW0 1356 aa14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 DNMBPQ6XZF7 1577 aa14.93□□□□□ -0.02
HMGCS1-202ENST00000433297 GAPVD1Q14C86 1478 aa14.92□□□□□ -0.02
HMGCS1-202ENST00000433297 BECN1Q14457 450 aa14.92□□□□□ -0.02
HMGCS1-202ENST00000433297 MBD5Q9P267 1494 aa14.92□□□□□ -0.02
HMGCS1-202ENST00000433297 NESP48681 1621 aa14.91□□□□□ -0.02
HMGCS1-202ENST00000433297 GOLGA2Q08379 1002 aa14.91□□□□□ -0.02
HMGCS1-202ENST00000433297 L1TD1Q5T7N2 865 aaKnown RBP14.91□□□□□ -0.02
HMGCS1-202ENST00000433297 DUSP27Q5VZP5 1158 aa14.91□□□□□ -0.02
HMGCS1-202ENST00000433297 CCDC146Q8IYE0 955 aa14.91□□□□□ -0.02
HMGCS1-202ENST00000433297 BCAR3O75815 825 aa14.89□□□□□ -0.03
HMGCS1-202ENST00000433297 PNNQ9H307 717 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-202ENST00000433297 IGHDP01880 384 aa14.89□□□□□ -0.03
HMGCS1-202ENST00000433297 CANXP27824 592 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-202ENST00000433297 RALGAPBQ86X10 1494 aa14.88□□□□□ -0.03
HMGCS1-202ENST00000433297 KIF14Q15058 1648 aa14.87□□□□□ -0.03
HMGCS1-202ENST00000433297 PLEKHH1Q9ULM0 1364 aa14.86□□□□□ -0.03
HMGCS1-202ENST00000433297 GOLGA6L3A6NEY3 463 aa14.86□□□□□ -0.03
HMGCS1-202ENST00000433297 PANK2Q9BZ23 570 aa14.86□□□□□ -0.03
HMGCS1-202ENST00000433297 ANKRD30AQ9BXX3 1397 aa14.85□□□□□ -0.03
HMGCS1-202ENST00000433297 HSP90AA2PQ14568 343 aaPredicted RBP14.85□□□□□ -0.03
HMGCS1-202ENST00000433297 ANKRD50Q9ULJ7 1429 aa14.85□□□□□ -0.03
HMGCS1-202ENST00000433297 HSP90AA1P07900 732 aaKnown RBP14.84□□□□□ -0.03
HMGCS1-202ENST00000433297 XRCC6P12956 609 aaKnown RBP eCLIP14.84□□□□□ -0.03
HMGCS1-202ENST00000433297 UPF2Q9HAU5 1272 aaKnown RBP14.84□□□□□ -0.03
HMGCS1-202ENST00000433297 USP19O94966 1318 aa14.84□□□□□ -0.03
HMGCS1-202ENST00000433297 DNMT1P26358 1616 aaKnown RBP14.83□□□□□ -0.03
HMGCS1-202ENST00000433297 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.036e-9■■■■■ 33.2
HMGCS1-202ENST00000433297 ZMYND15Q9H091 742 aa14.83□□□□□ -0.03
HMGCS1-202ENST00000433297 COG6Q9Y2V7 657 aa14.83□□□□□ -0.03
HMGCS1-202ENST00000433297 KNSTRNQ9Y448 316 aa14.83□□□□□ -0.03
HMGCS1-202ENST00000433297 UHRF1BP1Q6BDS2 1440 aa14.83□□□□□ -0.04
HMGCS1-202ENST00000433297 TSPY4P0CV99 314 aa14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 TSPY10P0CW01 314 aa14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 SPINK5Q9NQ38 1064 aaPredicted RBP14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 DISP3Q9P2K9 1392 aa14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 TMF1P82094 1093 aa14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 APAF1O14727 1248 aa14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 BLMP54132 1417 aaPredicted RBP14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 PRG4Q92954 1404 aaPredicted RBP14.82□□□□□ -0.04
HMGCS1-202ENST00000433297 PANK1Q8TE04 598 aa14.81□□□□□ -0.04
HMGCS1-202ENST00000433297 SLFN5Q08AF3 891 aa14.8□□□□□ -0.04
HMGCS1-202ENST00000433297 KIAA0586Q9BVV6 1533 aa14.8□□□□□ -0.04
HMGCS1-202ENST00000433297 PPP2R1AP30153 589 aa14.8□□□□□ -0.04
HMGCS1-202ENST00000433297 CAMSAP2Q08AD1 1489 aa14.79□□□□□ -0.04
HMGCS1-202ENST00000433297 TBC1D2Q9BYX2 928 aa14.78□□□□□ -0.04
HMGCS1-202ENST00000433297 ZMYM4Q5VZL5 1548 aa14.78□□□□□ -0.04
HMGCS1-202ENST00000433297 NEUROD2Q15784 382 aa14.78□□□□□ -0.04
HMGCS1-202ENST00000433297 LAMC3Q9Y6N6 1575 aa14.77□□□□□ -0.04
HMGCS1-202ENST00000433297 URB2Q14146 1524 aaKnown RBP14.77□□□□□ -0.04
HMGCS1-202ENST00000433297 TESK2Q96S53 571 aa14.77□□□□□ -0.04
HMGCS1-202ENST00000433297 PDS5BQ9NTI5 1447 aa14.77□□□□□ -0.05
HMGCS1-202ENST00000433297 HNRNPMP52272 730 aaKnown RBP eCLIP14.76□□□□□ -0.056e-8■■■■■ 30.3
HMGCS1-202ENST00000433297 CLUAP1Q96AJ1 413 aa14.76□□□□□ -0.05
HMGCS1-202ENST00000433297 WDR62O43379 1518 aa14.76□□□□□ -0.05
HMGCS1-202ENST00000433297 ANTXR1Q9H6X2 564 aa14.75□□□□□ -0.05
HMGCS1-202ENST00000433297 MAPK8IP3Q9UPT6 1336 aa14.75□□□□□ -0.05
HMGCS1-202ENST00000433297 MCM4P33991 863 aa14.75□□□□□ -0.05
HMGCS1-202ENST00000433297 CLCN1P35523 988 aa14.74□□□□□ -0.05
HMGCS1-202ENST00000433297 TRAK2O60296 914 aa14.74□□□□□ -0.05
HMGCS1-202ENST00000433297 MYH16Q9H6N6 1097 aa14.74□□□□□ -0.05
HMGCS1-202ENST00000433297 PLEKHH2Q8IVE3 1493 aa14.74□□□□□ -0.05
HMGCS1-202ENST00000433297 DMRT2Q9Y5R5 561 aa14.74□□□□□ -0.05
HMGCS1-202ENST00000433297 BCL2L13Q9BXK5 485 aa14.73□□□□□ -0.05
HMGCS1-202ENST00000433297 IQGAP2Q13576 1575 aa14.73□□□□□ -0.05
HMGCS1-202ENST00000433297 TRIM44Q96DX7 344 aaPredicted RBP14.72□□□□□ -0.05
HMGCS1-202ENST00000433297 CGNL1Q0VF96 1302 aa14.72□□□□□ -0.05
HMGCS1-202ENST00000433297 ZNF521Q96K83 1311 aa14.72□□□□□ -0.05
HMGCS1-202ENST00000433297 CCDC144AA2RUR9 1427 aa14.71□□□□□ -0.05
HMGCS1-202ENST00000433297 ERBINQ96RT1 1412 aa14.71□□□□□ -0.05
HMGCS1-202ENST00000433297 MFAP1P55081 439 aaKnown RBP14.71□□□□□ -0.05
HMGCS1-202ENST00000433297 CENPJQ9HC77 1338 aaPredicted RBP14.71□□□□□ -0.05
HMGCS1-202ENST00000433297 EIF3AQ14152 1382 aaKnown RBP14.71□□□□□ -0.05
HMGCS1-202ENST00000433297 RRP9O43818 475 aaKnown RBP14.71□□□□□ -0.06
HMGCS1-202ENST00000433297 NUP153P49790 1475 aaKnown RBP14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 E9PSI1 815 aa14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 TBC1D32Q96NH3 1257 aa14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 ARHGEF12Q9NZN5 1544 aa14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 GPATCH8Q9UKJ3 1502 aaKnown RBP14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 PDZRN3Q9UPQ7 1066 aa14.7□□□□□ -0.06
HMGCS1-202ENST00000433297 PRAG1Q86YV5 1406 aa14.69□□□□□ -0.06
HMGCS1-202ENST00000433297 KIF21AQ7Z4S6 1674 aa14.69□□□□□ -0.06
HMGCS1-202ENST00000433297 TNNQ9UQP3 1299 aa14.69□□□□□ -0.06
HMGCS1-202ENST00000433297 RRP7AQ9Y3A4 280 aaKnown RBP14.69□□□□□ -0.06
HMGCS1-202ENST00000433297 E9PCH4 1651 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms