RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KTN1Q86UP2 1357 aaKnown RBP11.39□□□□□ -0.59
USP40-203ENST00000427112 ERICH6BQ5W0A0 696 aa11.39□□□□□ -0.59
USP40-203ENST00000427112 KIF15Q9NS87 1388 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 BCAR3O75815 825 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 PZPP20742 1482 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 ARHGEF11O15085 1522 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 BCORL1Q5H9F3 1711 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 CUL7Q14999 1698 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 KNSTRNQ9Y448 316 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 KIAA1107Q9UPP5 1409 aa11.38□□□□□ -0.59
USP40-203ENST00000427112 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
USP40-203ENST00000427112 SLKQ9H2G2 1235 aaPredicted RBP11.37□□□□□ -0.59
USP40-203ENST00000427112 APAF1O14727 1248 aa11.37□□□□□ -0.59
USP40-203ENST00000427112 DISP3Q9P2K9 1392 aa11.37□□□□□ -0.59
USP40-203ENST00000427112 IQGAP2Q13576 1575 aa11.37□□□□□ -0.59
USP40-203ENST00000427112 CAMSAP2Q08AD1 1489 aa11.37□□□□□ -0.59
USP40-203ENST00000427112 SPINK5Q9NQ38 1064 aaPredicted RBP11.36□□□□□ -0.59
USP40-203ENST00000427112 BACH2Q9BYV9 841 aa11.35□□□□□ -0.59
USP40-203ENST00000427112 HECW1Q76N89 1606 aa11.35□□□□□ -0.59
USP40-203ENST00000427112 RALBP1Q15311 655 aa11.35□□□□□ -0.59
USP40-203ENST00000427112 SAMD9Q5K651 1589 aa11.35□□□□□ -0.59
USP40-203ENST00000427112 DMRT2Q9Y5R5 561 aa11.34□□□□□ -0.59
USP40-203ENST00000427112 MIA2Q96PC5 1412 aa11.34□□□□□ -0.59
USP40-203ENST00000427112 TNNQ9UQP3 1299 aa11.34□□□□□ -0.59
USP40-203ENST00000427112 PANK1Q8TE04 598 aa11.33□□□□□ -0.6
USP40-203ENST00000427112 AFAP1Q8N556 730 aa11.33□□□□□ -0.6
USP40-203ENST00000427112 COG6Q9Y2V7 657 aa11.33□□□□□ -0.6
USP40-203ENST00000427112 TMF1P82094 1093 aa11.32□□□□□ -0.6
USP40-203ENST00000427112 GPATCH8Q9UKJ3 1502 aaKnown RBP11.32□□□□□ -0.6
USP40-203ENST00000427112 KIF14Q15058 1648 aa11.32□□□□□ -0.6
USP40-203ENST00000427112 TCOF1Q13428 1488 aaKnown RBP11.32□□□□□ -0.6
USP40-203ENST00000427112 C9orf84Q5VXU9 1444 aa11.32□□□□□ -0.6
USP40-203ENST00000427112 TCERG1O14776 1098 aaKnown RBP11.32□□□□□ -0.6
USP40-203ENST00000427112 FRAT2O75474 233 aaPredicted RBP11.32□□□□□ -0.6
USP40-203ENST00000427112 CCDC144AA2RUR9 1427 aa11.31□□□□□ -0.6
USP40-203ENST00000427112 TROQ12816 1431 aaPredicted RBP11.3□□□□□ -0.6
USP40-203ENST00000427112 PER1O15534 1290 aaPredicted RBP11.3□□□□□ -0.6
USP40-203ENST00000427112 ABCA5Q8WWZ7 1642 aa11.3□□□□□ -0.6
USP40-203ENST00000427112 NFKBIBQ15653 356 aa11.29□□□□□ -0.6
USP40-203ENST00000427112 GZF1Q9H116 711 aaPredicted RBP11.29□□□□□ -0.6
USP40-203ENST00000427112 DISP1Q96F81 1524 aa11.29□□□□□ -0.6
USP40-203ENST00000427112 PPP2R1AP30153 589 aa11.29□□□□□ -0.6
USP40-203ENST00000427112 CFAP70Q5T0N1 1121 aa11.28□□□□□ -0.6
USP40-203ENST00000427112 TRAK1Q9UPV9 953 aa11.28□□□□□ -0.6
USP40-203ENST00000427112 ROCK1Q13464 1354 aa11.28□□□□□ -0.6
USP40-203ENST00000427112 TMEM132EQ6IEE7 984 aa11.27□□□□□ -0.6
USP40-203ENST00000427112 BRD4O60885 1362 aaPredicted RBP11.27□□□□□ -0.6
USP40-203ENST00000427112 KIAA0586Q9BVV6 1533 aa11.27□□□□□ -0.6
USP40-203ENST00000427112 SEC24BO95487 1268 aa11.27□□□□□ -0.61
USP40-203ENST00000427112 TESK2Q96S53 571 aa11.27□□□□□ -0.61
USP40-203ENST00000427112 PLEKHH1Q9ULM0 1364 aa11.27□□□□□ -0.61
USP40-203ENST00000427112 GOLGA2Q08379 1002 aa11.27□□□□□ -0.61
USP40-203ENST00000427112 RNF123Q5XPI4 1314 aa11.26□□□□□ -0.61
USP40-203ENST00000427112 GCC2Q8IWJ2 1684 aa11.26□□□□□ -0.61
USP40-203ENST00000427112 IGHDP01880 384 aa11.25□□□□□ -0.61
USP40-203ENST00000427112 PPM1GO15355 546 aaPredicted RBP11.25□□□□□ -0.61
USP40-203ENST00000427112 KIF3BO15066 747 aa11.25□□□□□ -0.61
USP40-203ENST00000427112 STK26Q9P289 416 aa11.24□□□□□ -0.61
USP40-203ENST00000427112 DUSP27Q5VZP5 1158 aa11.23□□□□□ -0.61
USP40-203ENST00000427112 ARID4BQ4LE39 1312 aaPredicted RBP11.23□□□□□ -0.61
USP40-203ENST00000427112 GGT6Q6P531 493 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 PLEKHH2Q8IVE3 1493 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 DNMT1P26358 1616 aaKnown RBP11.22□□□□□ -0.61
USP40-203ENST00000427112 FBLN1P23142 703 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 FOXD4L1Q9NU39 408 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 TARBP1Q13395 1621 aaKnown RBP11.22□□□□□ -0.61
USP40-203ENST00000427112 LRPPRCP42704 1394 aaKnown RBP11.22□□□□□ -0.61
USP40-203ENST00000427112 GRIN2AQ12879 1464 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 PTPRGP23470 1445 aa11.22□□□□□ -0.61
USP40-203ENST00000427112 U2SURPO15042 1029 aaKnown RBP11.21□□□□□ -0.61
USP40-203ENST00000427112 SLC12A5Q9H2X9 1139 aa11.21□□□□□ -0.61
USP40-203ENST00000427112 CARMIL2Q6F5E8 1435 aa11.21□□□□□ -0.61
USP40-203ENST00000427112 GLIPR1L2Q4G1C9 344 aa11.2□□□□□ -0.62
USP40-203ENST00000427112 RAPGEF6Q8TEU7 1601 aa11.2□□□□□ -0.62
USP40-203ENST00000427112 ADAMTS12P58397 1594 aa11.2□□□□□ -0.62
USP40-203ENST00000427112 ATP10BO94823 1461 aa11.2□□□□□ -0.62
USP40-203ENST00000427112 KIAA0556O60303 1618 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 ERBINQ96RT1 1412 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 GSE1Q14687 1217 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 POGKQ9P215 609 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 KDM5CP41229 1560 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 TSR2Q969E8 191 aaKnown RBP11.19□□□□□ -0.62
USP40-203ENST00000427112 FAM161AQ3B820 660 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 C8orf34Q49A92 452 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 PBRM1Q86U86 1689 aa11.19□□□□□ -0.62
USP40-203ENST00000427112 ELL2O00472 640 aaPredicted RBP11.18□□□□□ -0.62
USP40-203ENST00000427112 PDE3BQ13370 1112 aa11.18□□□□□ -0.62
USP40-203ENST00000427112 PARD3Q8TEW0 1356 aa11.18□□□□□ -0.62
USP40-203ENST00000427112 MORC1Q86VD1 984 aa11.18□□□□□ -0.62
USP40-203ENST00000427112 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
USP40-203ENST00000427112 RALGAPBQ86X10 1494 aa11.17□□□□□ -0.62
USP40-203ENST00000427112 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.17□□□□□ -0.62
USP40-203ENST00000427112 MAGI1Q96QZ7 1491 aaPredicted RBP11.17□□□□□ -0.62
USP40-203ENST00000427112 U2AF1L5P0DN76 240 aaPredicted RBP11.17□□□□□ -0.62
USP40-203ENST00000427112 U2AF1Q01081 240 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP40-203ENST00000427112 RLBP1P12271 317 aa11.16□□□□□ -0.62
USP40-203ENST00000427112 MFAP1P55081 439 aaKnown RBP11.16□□□□□ -0.62
USP40-203ENST00000427112 AMER1Q5JTC6 1135 aaPredicted RBP11.16□□□□□ -0.62
USP40-203ENST00000427112 DDRGK1Q96HY6 314 aa11.16□□□□□ -0.62
USP40-203ENST00000427112 CARD14Q9BXL6 1004 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms