RNA–Protein interactions for RNA: ENST00000424964.6

TMEM248-204, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-204ENST00000424964 PPP6R1Q9UPN7 881 aa22.44■■□□□ 1.18
TMEM248-204ENST00000424964 EIF2AK4Q9P2K8 1649 aaKnown RBP22.43■■□□□ 1.18
TMEM248-204ENST00000424964 CNTLNQ9NXG0 1405 aa22.41■■□□□ 1.18
TMEM248-204ENST00000424964 CEBPAP49715 358 aaPredicted RBP22.4■■□□□ 1.18
TMEM248-204ENST00000424964 ANKRD50Q9ULJ7 1429 aa22.4■■□□□ 1.18
TMEM248-204ENST00000424964 WASHC2CQ9Y4E1 1318 aa22.39■■□□□ 1.18
TMEM248-204ENST00000424964 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.39■■□□□ 1.17
TMEM248-204ENST00000424964 CLTCQ00610 1675 aaKnown RBP22.38■■□□□ 1.17
TMEM248-204ENST00000424964 RNF17Q9BXT8 1623 aaKnown RBP22.38■■□□□ 1.17
TMEM248-204ENST00000424964 ZMYM3Q14202 1370 aa22.36■■□□□ 1.17
TMEM248-204ENST00000424964 MROH2AA6NES4 1674 aa22.33■■□□□ 1.17
TMEM248-204ENST00000424964 C3P01024 1663 aa22.33■■□□□ 1.17
TMEM248-204ENST00000424964 KDM5DQ9BY66 1539 aa22.33■■□□□ 1.17
TMEM248-204ENST00000424964 KANK1Q14678 1352 aa22.32■■□□□ 1.16
TMEM248-204ENST00000424964 MROH1Q8NDA8 1641 aa22.31■■□□□ 1.16
TMEM248-204ENST00000424964 FAM135AQ9P2D6 1515 aa22.31■■□□□ 1.16
TMEM248-204ENST00000424964 DEPDC5O75140 1603 aa22.29■■□□□ 1.16
TMEM248-204ENST00000424964 ABCC3O15438 1527 aa22.28■■□□□ 1.16
TMEM248-204ENST00000424964 PRDM15P57071 1507 aaPredicted RBP22.28■■□□□ 1.16
TMEM248-204ENST00000424964 NAIPQ13075 1403 aa22.28■■□□□ 1.16
TMEM248-204ENST00000424964 CEP152O94986 1710 aa22.28■■□□□ 1.16
TMEM248-204ENST00000424964 ZC3H13Q5T200 1668 aaKnown RBP22.26■■□□□ 1.15
TMEM248-204ENST00000424964 SETD1BQ9UPS6 1966 aaKnown RBP22.26■■□□□ 1.15
TMEM248-204ENST00000424964 HFM1A2PYH4 1435 aa22.25■■□□□ 1.15
TMEM248-204ENST00000424964 GCC2Q8IWJ2 1684 aa22.25■■□□□ 1.15
TMEM248-204ENST00000424964 FBXO31Q5XUX0 539 aaPredicted RBP22.22■■□□□ 1.15
TMEM248-204ENST00000424964 CFAP65Q6ZU64 1925 aaKnown RBP22.21■■□□□ 1.15
TMEM248-204ENST00000424964 UNC13BO14795 1591 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 CAMSAP1Q5T5Y3 1602 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 NUP155O75694 1391 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 NPATQ14207 1427 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 PZPP20742 1482 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 VWDEQ8N2E2 1590 aa22.21■■□□□ 1.15
TMEM248-204ENST00000424964 TRIM52Q96A61 297 aa22.18■■□□□ 1.14
TMEM248-204ENST00000424964 LMTK2Q8IWU2 1503 aa22.17■■□□□ 1.14
TMEM248-204ENST00000424964 PREX1Q8TCU6 1659 aa22.17■■□□□ 1.14
TMEM248-204ENST00000424964 UHRF1BP1Q6BDS2 1440 aa22.16■■□□□ 1.14
TMEM248-204ENST00000424964 ARHGAP31Q2M1Z3 1444 aa22.14■■□□□ 1.14
TMEM248-204ENST00000424964 TNRQ92752 1358 aa22.14■■□□□ 1.14
TMEM248-204ENST00000424964 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.13
TMEM248-204ENST00000424964 IQGAP3Q86VI3 1631 aa22.13■■□□□ 1.13
TMEM248-204ENST00000424964 LMTK3Q96Q04 1460 aa22.13■■□□□ 1.13
TMEM248-204ENST00000424964 TET3O43151 1660 aa22.12■■□□□ 1.13
TMEM248-204ENST00000424964 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
TMEM248-204ENST00000424964 ERVK-7P63135 1459 aa22.11■■□□□ 1.13
TMEM248-204ENST00000424964 HSPA2P54652 639 aa22.11■■□□□ 1.13
TMEM248-204ENST00000424964 SPATA31D1Q6ZQQ2 1576 aa22.08■■□□□ 1.13
TMEM248-204ENST00000424964 MYO3AQ8NEV4 1616 aa22.08■■□□□ 1.13
TMEM248-204ENST00000424964 RAB3GAP2Q9H2M9 1393 aa22.06■■□□□ 1.12
TMEM248-204ENST00000424964 RPRD2Q5VT52 1461 aaKnown RBP22.06■■□□□ 1.12
TMEM248-204ENST00000424964 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
TMEM248-204ENST00000424964 SLC4A1APQ9BWU0 796 aaKnown RBP22.05■■□□□ 1.12
TMEM248-204ENST00000424964 ACIN1Q9UKV3 1341 aaKnown RBP22.05■■□□□ 1.12
TMEM248-204ENST00000424964 E9PCH4 1651 aa22.04■■□□□ 1.12
TMEM248-204ENST00000424964 CEP170BQ9Y4F5 1589 aaPredicted RBP22.04■■□□□ 1.12
TMEM248-204ENST00000424964 NLRP1Q9C000 1473 aa22.03■■□□□ 1.12
TMEM248-204ENST00000424964 A2ML1A8K2U0 1454 aa22.03■■□□□ 1.12
TMEM248-204ENST00000424964 ZNF142P52746 1687 aaPredicted RBP22.01■■□□□ 1.11
TMEM248-204ENST00000424964 NOS1P29475 1434 aa22.01■■□□□ 1.11
TMEM248-204ENST00000424964 PKD2Q13563 968 aa22.01■■□□□ 1.11
TMEM248-204ENST00000424964 IDI1Q13907 227 aa21.98■■□□□ 1.11
TMEM248-204ENST00000424964 MPHOSPH9Q99550 1183 aa21.98■■□□□ 1.11
TMEM248-204ENST00000424964 STAG3Q9UJ98 1225 aa21.98■■□□□ 1.11
TMEM248-204ENST00000424964 SYNMO15061 1565 aa21.98■■□□□ 1.11
TMEM248-204ENST00000424964 HRCP23327 699 aa21.97■■□□□ 1.11
TMEM248-204ENST00000424964 THEMISQ8N1K5 641 aaPredicted RBP21.97■■□□□ 1.11
TMEM248-204ENST00000424964 SLC52A1Q9NWF4 448 aa21.97■■□□□ 1.11
TMEM248-204ENST00000424964 UGGT1Q9NYU2 1555 aa21.96■■□□□ 1.11
TMEM248-204ENST00000424964 FOXD1Q16676 465 aa21.93■■□□□ 1.1
TMEM248-204ENST00000424964 SPHKAPQ2M3C7 1700 aa21.92■■□□□ 1.1
TMEM248-204ENST00000424964 PIK3C2BO00750 1634 aa21.92■■□□□ 1.1
TMEM248-204ENST00000424964 CHGAP10645 457 aaKnown RBP21.91■■□□□ 1.1
TMEM248-204ENST00000424964 NCKAP5LQ9HCH0 1330 aa21.9■■□□□ 1.1
TMEM248-204ENST00000424964 UBR1Q8IWV7 1749 aa21.9■■□□□ 1.1
TMEM248-204ENST00000424964 PTPRTO14522 1441 aa21.89■■□□□ 1.1
TMEM248-204ENST00000424964 STRCQ7RTU9 1775 aa21.89■■□□□ 1.09
TMEM248-204ENST00000424964 PLA2R1Q13018 1463 aa21.88■■□□□ 1.09
TMEM248-204ENST00000424964 ANKLE2Q86XL3 938 aa21.87■■□□□ 1.09
TMEM248-204ENST00000424964 DMRT2Q9Y5R5 561 aa21.87■■□□□ 1.09
TMEM248-204ENST00000424964 ADGRB3O60242 1522 aa21.85■■□□□ 1.09
TMEM248-204ENST00000424964 KDM5AP29375 1690 aaKnown RBP21.84■■□□□ 1.09
TMEM248-204ENST00000424964 TRPM2O94759 1503 aa21.84■■□□□ 1.09
TMEM248-204ENST00000424964 MYO5BQ9ULV0 1848 aa21.83■■□□□ 1.08
TMEM248-204ENST00000424964 TXNDC2Q86VQ3 553 aa21.82■■□□□ 1.08
TMEM248-204ENST00000424964 EID1Q9Y6B2 187 aa21.82■■□□□ 1.08
TMEM248-204ENST00000424964 TMEM131LA2VDJ0 1609 aa21.81■■□□□ 1.08
TMEM248-204ENST00000424964 CLTCL1P53675 1640 aa21.81■■□□□ 1.08
TMEM248-204ENST00000424964 TMEM2Q9UHN6 1383 aa21.81■■□□□ 1.08
TMEM248-204ENST00000424964 POLR1AO95602 1720 aaPredicted RBP21.8■■□□□ 1.08
TMEM248-204ENST00000424964 SLIT1O75093 1534 aa21.79■■□□□ 1.08
TMEM248-204ENST00000424964 ARHGAP23Q9P227 1491 aa21.78■■□□□ 1.08
TMEM248-204ENST00000424964 LTKP29376 864 aa21.78■■□□□ 1.08
TMEM248-204ENST00000424964 ZNF326Q5BKZ1 582 aaKnown RBP21.78■■□□□ 1.08
TMEM248-204ENST00000424964 PCGF6Q9BYE7 350 aa21.78■■□□□ 1.08
TMEM248-204ENST00000424964 KIF1BO60333 1816 aa21.78■■□□□ 1.08
TMEM248-204ENST00000424964 HDGFP51858 240 aaKnown RBP21.77■■□□□ 1.08
TMEM248-204ENST00000424964 CCDC144AA2RUR9 1427 aa21.77■■□□□ 1.08
TMEM248-204ENST00000424964 SCAF11Q99590 1463 aaKnown RBP21.77■■□□□ 1.07
TMEM248-204ENST00000424964 NPHP4O75161 1426 aaPredicted RBP21.74■■□□□ 1.07
TMEM248-204ENST00000424964 RIMS2Q9UQ26 1411 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms