RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 ABCA6Q8N139 1617 aa14.07□□□□□ -0.16
PDGFC-202ENST00000422544 DHX29Q7Z478 1369 aaKnown RBP14.07□□□□□ -0.16
PDGFC-202ENST00000422544 ANKRD30AQ9BXX3 1397 aa14.07□□□□□ -0.16
PDGFC-202ENST00000422544 A2MP01023 1474 aa14.06□□□□□ -0.16
PDGFC-202ENST00000422544 SHANK2Q9UPX8 1470 aa14.06□□□□□ -0.16
PDGFC-202ENST00000422544 CEBPAP49715 358 aaPredicted RBP14.06□□□□□ -0.16
PDGFC-202ENST00000422544 MAST1Q9Y2H9 1570 aa14.05□□□□□ -0.16
PDGFC-202ENST00000422544 KIF15Q9NS87 1388 aa14.05□□□□□ -0.16
PDGFC-202ENST00000422544 NCOA1Q15788 1441 aa14.05□□□□□ -0.16
PDGFC-202ENST00000422544 KIF3BO15066 747 aa14.03□□□□□ -0.16
PDGFC-202ENST00000422544 GGT6Q6P531 493 aa14.02□□□□□ -0.17
PDGFC-202ENST00000422544 ROCK1Q13464 1354 aa14.01□□□□□ -0.17
PDGFC-202ENST00000422544 REREQ9P2R6 1566 aa14□□□□□ -0.17
PDGFC-202ENST00000422544 AGLP35573 1532 aa14□□□□□ -0.17
PDGFC-202ENST00000422544 ADGRL2O95490 1459 aa14□□□□□ -0.17
PDGFC-202ENST00000422544 CROCC2H7BZ55 1655 aa14□□□□□ -0.17
PDGFC-202ENST00000422544 PLXNC1O60486 1568 aa13.98□□□□□ -0.17
PDGFC-202ENST00000422544 DUOX2Q9NRD8 1548 aa13.98□□□□□ -0.17
PDGFC-202ENST00000422544 PTPRTO14522 1441 aa13.98□□□□□ -0.17
PDGFC-202ENST00000422544 ADGBQ8N7X0 1667 aa13.98□□□□□ -0.17
PDGFC-202ENST00000422544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.17
PDGFC-202ENST00000422544 ESF1Q9H501 851 aaKnown RBP13.96□□□□□ -0.17
PDGFC-202ENST00000422544 ERBINQ96RT1 1412 aa13.96□□□□□ -0.18
PDGFC-202ENST00000422544 ANKRD50Q9ULJ7 1429 aa13.96□□□□□ -0.18
PDGFC-202ENST00000422544 WASHC2CQ9Y4E1 1318 aa13.92□□□□□ -0.18
PDGFC-202ENST00000422544 NAIPQ13075 1403 aa13.92□□□□□ -0.18
PDGFC-202ENST00000422544 UHRF1BP1Q6BDS2 1440 aa13.92□□□□□ -0.18
PDGFC-202ENST00000422544 IQSEC2Q5JU85 1478 aa13.92□□□□□ -0.18
PDGFC-202ENST00000422544 HFM1A2PYH4 1435 aa13.9□□□□□ -0.18
PDGFC-202ENST00000422544 TRIM26Q12899 539 aaPredicted RBP13.9□□□□□ -0.18
PDGFC-202ENST00000422544 ZMYM3Q14202 1370 aa13.89□□□□□ -0.19
PDGFC-202ENST00000422544 EIF2AK4Q9P2K8 1649 aaKnown RBP13.88□□□□□ -0.19
PDGFC-202ENST00000422544 KANK1Q14678 1352 aa13.87□□□□□ -0.19
PDGFC-202ENST00000422544 CAMSAP1Q5T5Y3 1602 aa13.87□□□□□ -0.19
PDGFC-202ENST00000422544 MROH2AA6NES4 1674 aa13.87□□□□□ -0.19
PDGFC-202ENST00000422544 CNTLNQ9NXG0 1405 aa13.87□□□□□ -0.19
PDGFC-202ENST00000422544 TRIM52Q96A61 297 aa13.86□□□□□ -0.19
PDGFC-202ENST00000422544 ZNF142P52746 1687 aaPredicted RBP13.85□□□□□ -0.19
PDGFC-202ENST00000422544 NUP155O75694 1391 aa13.85□□□□□ -0.19
PDGFC-202ENST00000422544 SETD5Q9C0A6 1442 aa13.85□□□□□ -0.19
PDGFC-202ENST00000422544 DMRT2Q9Y5R5 561 aa13.85□□□□□ -0.19
PDGFC-202ENST00000422544 RNF17Q9BXT8 1623 aaKnown RBP13.85□□□□□ -0.19
PDGFC-202ENST00000422544 MROH1Q8NDA8 1641 aa13.84□□□□□ -0.19
PDGFC-202ENST00000422544 FBXO31Q5XUX0 539 aaPredicted RBP13.84□□□□□ -0.19
PDGFC-202ENST00000422544 KDM5DQ9BY66 1539 aa13.84□□□□□ -0.19
PDGFC-202ENST00000422544 MSH5O43196 834 aa13.83□□□□□ -0.2
PDGFC-202ENST00000422544 ABCC3O15438 1527 aa13.83□□□□□ -0.2
PDGFC-202ENST00000422544 ALKQ9UM73 1620 aa13.82□□□□□ -0.2
PDGFC-202ENST00000422544 PRDM15P57071 1507 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-202ENST00000422544 MYO3AQ8NEV4 1616 aa13.82□□□□□ -0.2
PDGFC-202ENST00000422544 DEPDC5O75140 1603 aa13.81□□□□□ -0.2
PDGFC-202ENST00000422544 ZNF335Q9H4Z2 1342 aaPredicted RBP13.81□□□□□ -0.2
PDGFC-202ENST00000422544 CLTCQ00610 1675 aaKnown RBP13.81□□□□□ -0.2
PDGFC-202ENST00000422544 RAB3GAP2Q9H2M9 1393 aa13.81□□□□□ -0.2
PDGFC-202ENST00000422544 FAM135AQ9P2D6 1515 aa13.8□□□□□ -0.2
PDGFC-202ENST00000422544 MED1Q15648 1581 aaPredicted RBP13.79□□□□□ -0.2
PDGFC-202ENST00000422544 VWDEQ8N2E2 1590 aa13.79□□□□□ -0.2
PDGFC-202ENST00000422544 GCC2Q8IWJ2 1684 aa13.79□□□□□ -0.2
PDGFC-202ENST00000422544 NCKAP5LQ9HCH0 1330 aa13.79□□□□□ -0.2
PDGFC-202ENST00000422544 HRCP23327 699 aa13.78□□□□□ -0.2
PDGFC-202ENST00000422544 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
PDGFC-202ENST00000422544 LMTK2Q8IWU2 1503 aa13.78□□□□□ -0.2
PDGFC-202ENST00000422544 UNC13BO14795 1591 aa13.78□□□□□ -0.2
PDGFC-202ENST00000422544 PZPP20742 1482 aa13.77□□□□□ -0.21
PDGFC-202ENST00000422544 NPATQ14207 1427 aa13.77□□□□□ -0.21
PDGFC-202ENST00000422544 ARHGAP31Q2M1Z3 1444 aa13.77□□□□□ -0.21
PDGFC-202ENST00000422544 MPHOSPH9Q99550 1183 aa13.76□□□□□ -0.21
PDGFC-202ENST00000422544 PCGF6Q9BYE7 350 aa13.76□□□□□ -0.21
PDGFC-202ENST00000422544 NEURL4Q96JN8 1562 aa13.75□□□□□ -0.21
PDGFC-202ENST00000422544 CEP170BQ9Y4F5 1589 aaPredicted RBP13.75□□□□□ -0.21
PDGFC-202ENST00000422544 ACIN1Q9UKV3 1341 aaKnown RBP13.75□□□□□ -0.21
PDGFC-202ENST00000422544 PKD2Q13563 968 aa13.75□□□□□ -0.21
PDGFC-202ENST00000422544 CEP152O94986 1710 aa13.75□□□□□ -0.21
PDGFC-202ENST00000422544 TNRQ92752 1358 aa13.74□□□□□ -0.21
PDGFC-202ENST00000422544 ZC3H13Q5T200 1668 aaKnown RBP13.74□□□□□ -0.21
PDGFC-202ENST00000422544 PLA2R1Q13018 1463 aa13.74□□□□□ -0.21
PDGFC-202ENST00000422544 STRCP1A6NGW2 1772 aa13.73□□□□□ -0.21
PDGFC-202ENST00000422544 POLR1AO95602 1720 aaPredicted RBP13.73□□□□□ -0.21
PDGFC-202ENST00000422544 IQGAP3Q86VI3 1631 aa13.72□□□□□ -0.21
PDGFC-202ENST00000422544 EFCAB6Q5THR3 1501 aa13.72□□□□□ -0.21
PDGFC-202ENST00000422544 ERVK-7P63135 1459 aa13.72□□□□□ -0.21
PDGFC-202ENST00000422544 UBAP1LF5GYI3 381 aa13.71□□□□□ -0.21
PDGFC-202ENST00000422544 RPRD2Q5VT52 1461 aaKnown RBP13.7□□□□□ -0.22
PDGFC-202ENST00000422544 NOS1P29475 1434 aa13.7□□□□□ -0.22
PDGFC-202ENST00000422544 TET3O43151 1660 aa13.69□□□□□ -0.22
PDGFC-202ENST00000422544 HSPA1LP34931 641 aa13.69□□□□□ -0.22
PDGFC-202ENST00000422544 IDI1Q13907 227 aa13.69□□□□□ -0.22
PDGFC-202ENST00000422544 CFAP65Q6ZU64 1925 aaKnown RBP13.68□□□□□ -0.22
PDGFC-202ENST00000422544 SLC52A1Q9NWF4 448 aa13.67□□□□□ -0.22
PDGFC-202ENST00000422544 STAG3Q9UJ98 1225 aa13.66□□□□□ -0.22
PDGFC-202ENST00000422544 E9PCH4 1651 aa13.66□□□□□ -0.22
PDGFC-202ENST00000422544 NLRP1Q9C000 1473 aa13.65□□□□□ -0.22
PDGFC-202ENST00000422544 A2ML1A8K2U0 1454 aa13.64□□□□□ -0.23
PDGFC-202ENST00000422544 CHGAP10645 457 aaKnown RBP13.64□□□□□ -0.23
PDGFC-202ENST00000422544 THEMISQ8N1K5 641 aaPredicted RBP13.64□□□□□ -0.23
PDGFC-202ENST00000422544 XIRP1Q702N8 1843 aaKnown RBP13.64□□□□□ -0.23
PDGFC-202ENST00000422544 SYNMO15061 1565 aa13.63□□□□□ -0.23
PDGFC-202ENST00000422544 UGGT1Q9NYU2 1555 aa13.61□□□□□ -0.23
PDGFC-202ENST00000422544 CPS1P31327 1500 aa13.59□□□□□ -0.23
PDGFC-202ENST00000422544 RGS17Q9UGC6 210 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms