RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 PTPRKQ15262 1439 aa13.12□□□□□ -0.31
SNHG3-201ENST00000413987 BCL11BQ9C0K0 894 aaPredicted RBP13.11□□□□□ -0.31
SNHG3-201ENST00000413987 CHIC2Q9UKJ5 165 aa13.11□□□□□ -0.31
SNHG3-201ENST00000413987 WDR7Q9Y4E6 1490 aa13.11□□□□□ -0.31
SNHG3-201ENST00000413987 USP35Q9P2H5 1018 aa13.1□□□□□ -0.31
SNHG3-201ENST00000413987 CHGAP10645 457 aaKnown RBP13.09□□□□□ -0.31
SNHG3-201ENST00000413987 SUPT16HQ9Y5B9 1047 aaKnown RBP13.08□□□□□ -0.32
SNHG3-201ENST00000413987 CAMSAP2Q08AD1 1489 aa13.08□□□□□ -0.32
SNHG3-201ENST00000413987 PKNOX2Q96KN3 472 aa13.08□□□□□ -0.32
SNHG3-201ENST00000413987 ZNF692Q9BU19 519 aaPredicted RBP13.08□□□□□ -0.32
SNHG3-201ENST00000413987 ITSN2Q9NZM3 1697 aa13.07□□□□□ -0.32
SNHG3-201ENST00000413987 TMCO4Q5TGY1 634 aa13.07□□□□□ -0.32
SNHG3-201ENST00000413987 FAM177A1Q8N128 213 aaPredicted RBP13.07□□□□□ -0.32
SNHG3-201ENST00000413987 CDC42BPBQ9Y5S2 1711 aa13.07□□□□□ -0.32
SNHG3-201ENST00000413987 MIA2Q96PC5 1412 aa13.07□□□□□ -0.32
SNHG3-201ENST00000413987 TCOF1Q13428 1488 aaKnown RBP13.07□□□□□ -0.32
SNHG3-201ENST00000413987 ARHGAP5Q13017 1502 aa13.05□□□□□ -0.32
SNHG3-201ENST00000413987 PREX2Q70Z35 1606 aa13.05□□□□□ -0.32
SNHG3-201ENST00000413987 HNRNPMP52272 730 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■□□□ 12.6
SNHG3-201ENST00000413987 AEBP1Q8IUX7 1158 aa13.04□□□□□ -0.32
SNHG3-201ENST00000413987 RRP7BPQ9NSQ0 103 aa13.04□□□□□ -0.32
SNHG3-201ENST00000413987 E9PSI1 815 aa13.04□□□□□ -0.32
SNHG3-201ENST00000413987 MYCNP04198 464 aaPredicted RBP13.04□□□□□ -0.32
SNHG3-201ENST00000413987 MFAP1P55081 439 aaKnown RBP13.04□□□□□ -0.32
SNHG3-201ENST00000413987 MYO5CQ9NQX4 1742 aa13.03□□□□□ -0.32
SNHG3-201ENST00000413987 SLC4A2P04920 1241 aa13.03□□□□□ -0.32
SNHG3-201ENST00000413987 SAMD9LQ8IVG5 1584 aa13.03□□□□□ -0.32
SNHG3-201ENST00000413987 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.03□□□□□ -0.32
SNHG3-201ENST00000413987 ABCC5O15440 1437 aa13.02□□□□□ -0.32
SNHG3-201ENST00000413987 TRAIPQ9BWF2 469 aa13.02□□□□□ -0.33
SNHG3-201ENST00000413987 DAPK1P53355 1430 aa13.02□□□□□ -0.33
SNHG3-201ENST00000413987 RAB3GAP2Q9H2M9 1393 aa13.01□□□□□ -0.33
SNHG3-201ENST00000413987 SYCP2Q9BX26 1530 aa13□□□□□ -0.33
SNHG3-201ENST00000413987 PLCH2O75038 1416 aa13□□□□□ -0.33
SNHG3-201ENST00000413987 SLC24A3Q9HC58 644 aa13□□□□□ -0.33
SNHG3-201ENST00000413987 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
SNHG3-201ENST00000413987 DNMT1P26358 1616 aaKnown RBP12.99□□□□□ -0.33
SNHG3-201ENST00000413987 FGD1P98174 961 aa12.99□□□□□ -0.33
SNHG3-201ENST00000413987 TICAM2Q86XR7 235 aa12.99□□□□□ -0.33
SNHG3-201ENST00000413987 ABCA9Q8IUA7 1624 aa12.98□□□□□ -0.33
SNHG3-201ENST00000413987 ARHGEF12Q9NZN5 1544 aa12.98□□□□□ -0.33
SNHG3-201ENST00000413987 RSPH4AQ5TD94 716 aa12.98□□□□□ -0.33
SNHG3-201ENST00000413987 ZNF592Q92610 1267 aa12.97□□□□□ -0.33
SNHG3-201ENST00000413987 SETD5Q9C0A6 1442 aa12.97□□□□□ -0.33
SNHG3-201ENST00000413987 MAPKBP1O60336 1514 aa12.97□□□□□ -0.33
SNHG3-201ENST00000413987 CWC22Q9HCG8 908 aaKnown RBP12.97□□□□□ -0.33
SNHG3-201ENST00000413987 KDM6BO15054 1643 aa12.97□□□□□ -0.33
SNHG3-201ENST00000413987 MBD5Q9P267 1494 aa12.96□□□□□ -0.33
SNHG3-201ENST00000413987 NAIPQ13075 1403 aa12.96□□□□□ -0.33
SNHG3-201ENST00000413987 FANCAO15360 1455 aa12.96□□□□□ -0.34
SNHG3-201ENST00000413987 CCDC82Q8N4S0 544 aa12.96□□□□□ -0.34
SNHG3-201ENST00000413987 CD109Q6YHK3 1445 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 CLSTN1O94985 981 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 FAM69CQ0P6D2 419 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 EFCAB2Q5VUJ9 269 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 PSMD1Q99460 953 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 BRPF3Q9ULD4 1205 aa12.95□□□□□ -0.34
SNHG3-201ENST00000413987 ZNF326Q5BKZ1 582 aaKnown RBP12.94□□□□□ -0.34
SNHG3-201ENST00000413987 HFM1A2PYH4 1435 aa12.94□□□□□ -0.34
SNHG3-201ENST00000413987 PPM1GO15355 546 aaPredicted RBP12.94□□□□□ -0.34
SNHG3-201ENST00000413987 ZFP91Q96JP5 570 aaPredicted RBP12.94□□□□□ -0.34
SNHG3-201ENST00000413987 CROCC2H7BZ55 1655 aa12.94□□□□□ -0.34
SNHG3-201ENST00000413987 CERS3Q8IU89 383 aa12.93□□□□□ -0.34
SNHG3-201ENST00000413987 AFAP1Q8N556 730 aa12.93□□□□□ -0.34
SNHG3-201ENST00000413987 TRAPPC8Q9Y2L5 1435 aa12.93□□□□□ -0.34
SNHG3-201ENST00000413987 C9orf84Q5VXU9 1444 aa12.93□□□□□ -0.34
SNHG3-201ENST00000413987 AKNAQ7Z591 1439 aa12.93□□□□□ -0.34
SNHG3-201ENST00000413987 ABCC1P33527 1531 aa12.92□□□□□ -0.34
SNHG3-201ENST00000413987 DIP2BQ9P265 1576 aa12.91□□□□□ -0.34
SNHG3-201ENST00000413987 CCDC141Q6ZP82 1450 aa12.91□□□□□ -0.34
SNHG3-201ENST00000413987 DHX57Q6P158 1386 aaKnown RBP12.91□□□□□ -0.34
SNHG3-201ENST00000413987 MAPK8IP2Q13387 824 aaPredicted RBP12.91□□□□□ -0.34
SNHG3-201ENST00000413987 ZC3H15Q8WU90 426 aaKnown RBP12.91□□□□□ -0.34
SNHG3-201ENST00000413987 GZF1Q9H116 711 aaPredicted RBP12.91□□□□□ -0.34
SNHG3-201ENST00000413987 TSPOAP1O95153 1857 aa12.91□□□□□ -0.34
SNHG3-201ENST00000413987 NCOA1Q15788 1441 aa12.9□□□□□ -0.34
SNHG3-201ENST00000413987 TSPY4P0CV99 314 aa12.9□□□□□ -0.34
SNHG3-201ENST00000413987 TSPY10P0CW01 314 aa12.9□□□□□ -0.34
SNHG3-201ENST00000413987 ADGRL1O94910 1474 aa12.9□□□□□ -0.34
SNHG3-201ENST00000413987 ARHGEF5Q12774 1597 aa12.89□□□□□ -0.35
SNHG3-201ENST00000413987 GCC2Q8IWJ2 1684 aa12.89□□□□□ -0.35
SNHG3-201ENST00000413987 PIAS4Q8N2W9 510 aaPredicted RBP12.89□□□□□ -0.35
SNHG3-201ENST00000413987 ARID4BQ4LE39 1312 aaPredicted RBP12.89□□□□□ -0.35
SNHG3-201ENST00000413987 SCAPERQ9BY12 1400 aa12.88□□□□□ -0.35
SNHG3-201ENST00000413987 PROM2Q8N271 834 aa12.88□□□□□ -0.35
SNHG3-201ENST00000413987 ADGBQ8N7X0 1667 aa12.88□□□□□ -0.35
SNHG3-201ENST00000413987 MAP3K4Q9Y6R4 1608 aa12.88□□□□□ -0.35
SNHG3-201ENST00000413987 KIAA1107Q9UPP5 1409 aa12.87□□□□□ -0.35
SNHG3-201ENST00000413987 ARAP3Q8WWN8 1544 aa12.87□□□□□ -0.35
SNHG3-201ENST00000413987 RAPGEF3O95398 923 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 FOXD1Q16676 465 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 CC2D2BQ6DHV5 1058 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 TRIM52Q96A61 297 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 ROCK1Q13464 1354 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 SPOCK2Q92563 424 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 ANKRD30AQ9BXX3 1397 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 KIF15Q9NS87 1388 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 MYT1LQ9UL68 1186 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 SHANK2Q9UPX8 1470 aa12.86□□□□□ -0.35
SNHG3-201ENST00000413987 ADGRL2O95490 1459 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms