RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 ERBINQ96RT1 1412 aa25.18■■□□□ 1.62
CXCL1-201ENST00000395761 CNTLNQ9NXG0 1405 aa25.17■■□□□ 1.62
CXCL1-201ENST00000395761 ROCK1Q13464 1354 aa25.17■■□□□ 1.62
CXCL1-201ENST00000395761 EIF2AK4Q9P2K8 1649 aaKnown RBP25.16■■□□□ 1.62
CXCL1-201ENST00000395761 CLTCQ00610 1675 aaKnown RBP25.14■■□□□ 1.62
CXCL1-201ENST00000395761 RNF17Q9BXT8 1623 aaKnown RBP25.14■■□□□ 1.61
CXCL1-201ENST00000395761 ZMYM3Q14202 1370 aa25.14■■□□□ 1.61
CXCL1-201ENST00000395761 WASHC2CQ9Y4E1 1318 aa25.13■■□□□ 1.61
CXCL1-201ENST00000395761 ANKRD50Q9ULJ7 1429 aa25.12■■□□□ 1.61
CXCL1-201ENST00000395761 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.11■■□□□ 1.61
CXCL1-201ENST00000395761 MROH1Q8NDA8 1641 aa25.11■■□□□ 1.61
CXCL1-201ENST00000395761 C3P01024 1663 aa25.1■■□□□ 1.61
CXCL1-201ENST00000395761 MROH2AA6NES4 1674 aa25.07■■□□□ 1.6
CXCL1-201ENST00000395761 KDM5DQ9BY66 1539 aa25.07■■□□□ 1.6
CXCL1-201ENST00000395761 ABCC3O15438 1527 aa25.05■■□□□ 1.6
CXCL1-201ENST00000395761 FAM135AQ9P2D6 1515 aa25.04■■□□□ 1.6
CXCL1-201ENST00000395761 DEPDC5O75140 1603 aa25.04■■□□□ 1.6
CXCL1-201ENST00000395761 PRDM15P57071 1507 aaPredicted RBP25.03■■□□□ 1.6
CXCL1-201ENST00000395761 FBXO31Q5XUX0 539 aaPredicted RBP25.01■■□□□ 1.59
CXCL1-201ENST00000395761 KANK1Q14678 1352 aa25■■□□□ 1.59
CXCL1-201ENST00000395761 NAIPQ13075 1403 aa24.99■■□□□ 1.59
CXCL1-201ENST00000395761 CEP152O94986 1710 aa24.98■■□□□ 1.59
CXCL1-201ENST00000395761 NPATQ14207 1427 aa24.98■■□□□ 1.59
CXCL1-201ENST00000395761 LMTK3Q96Q04 1460 aa24.97■■□□□ 1.59
CXCL1-201ENST00000395761 ZC3H13Q5T200 1668 aaKnown RBP24.97■■□□□ 1.59
CXCL1-201ENST00000395761 VWDEQ8N2E2 1590 aa24.97■■□□□ 1.59
CXCL1-201ENST00000395761 PZPP20742 1482 aa24.96■■□□□ 1.59
CXCL1-201ENST00000395761 HFM1A2PYH4 1435 aa24.95■■□□□ 1.58
CXCL1-201ENST00000395761 CAMSAP1Q5T5Y3 1602 aa24.94■■□□□ 1.58
CXCL1-201ENST00000395761 HSPA2P54652 639 aa24.93■■□□□ 1.58
CXCL1-201ENST00000395761 SETD1BQ9UPS6 1966 aaKnown RBP24.93■■□□□ 1.58
CXCL1-201ENST00000395761 UNC13BO14795 1591 aa24.93■■□□□ 1.58
CXCL1-201ENST00000395761 LMTK2Q8IWU2 1503 aa24.91■■□□□ 1.58
CXCL1-201ENST00000395761 PREX1Q8TCU6 1659 aa24.91■■□□□ 1.58
CXCL1-201ENST00000395761 UHRF1BP1Q6BDS2 1440 aa24.91■■□□□ 1.58
CXCL1-201ENST00000395761 GCC2Q8IWJ2 1684 aa24.91■■□□□ 1.58
CXCL1-201ENST00000395761 NUP155O75694 1391 aa24.9■■□□□ 1.58
CXCL1-201ENST00000395761 ARHGAP31Q2M1Z3 1444 aa24.89■■□□□ 1.58
CXCL1-201ENST00000395761 TNRQ92752 1358 aa24.89■■□□□ 1.57
CXCL1-201ENST00000395761 ERVK-7P63135 1459 aa24.86■■□□□ 1.57
CXCL1-201ENST00000395761 SPATA31D1Q6ZQQ2 1576 aa24.84■■□□□ 1.57
CXCL1-201ENST00000395761 EFCAB6Q5THR3 1501 aa24.83■■□□□ 1.57
CXCL1-201ENST00000395761 CFAP65Q6ZU64 1925 aaKnown RBP24.83■■□□□ 1.57
CXCL1-201ENST00000395761 MYO3AQ8NEV4 1616 aa24.83■■□□□ 1.56
CXCL1-201ENST00000395761 IQGAP3Q86VI3 1631 aa24.82■■□□□ 1.56
CXCL1-201ENST00000395761 TET3O43151 1660 aa24.81■■□□□ 1.56
CXCL1-201ENST00000395761 TRIM52Q96A61 297 aa24.8■■□□□ 1.56
CXCL1-201ENST00000395761 SETD5Q9C0A6 1442 aa24.78■■□□□ 1.56
CXCL1-201ENST00000395761 CEP170BQ9Y4F5 1589 aaPredicted RBP24.78■■□□□ 1.56
CXCL1-201ENST00000395761 A2ML1A8K2U0 1454 aa24.77■■□□□ 1.56
CXCL1-201ENST00000395761 NOS1P29475 1434 aa24.75■■□□□ 1.55
CXCL1-201ENST00000395761 RPRD2Q5VT52 1461 aaKnown RBP24.75■■□□□ 1.55
CXCL1-201ENST00000395761 NLRP1Q9C000 1473 aa24.75■■□□□ 1.55
CXCL1-201ENST00000395761 ZNF142P52746 1687 aaPredicted RBP24.75■■□□□ 1.55
CXCL1-201ENST00000395761 E9PCH4 1651 aa24.73■■□□□ 1.55
CXCL1-201ENST00000395761 SYNMO15061 1565 aa24.71■■□□□ 1.55
CXCL1-201ENST00000395761 IDI1Q13907 227 aa24.71■■□□□ 1.55
CXCL1-201ENST00000395761 RAB3GAP2Q9H2M9 1393 aa24.7■■□□□ 1.55
CXCL1-201ENST00000395761 SLC4A1APQ9BWU0 796 aaKnown RBP24.68■■□□□ 1.54
CXCL1-201ENST00000395761 UGGT1Q9NYU2 1555 aa24.67■■□□□ 1.54
CXCL1-201ENST00000395761 PKD2Q13563 968 aa24.67■■□□□ 1.54
CXCL1-201ENST00000395761 THEMISQ8N1K5 641 aaPredicted RBP24.67■■□□□ 1.54
CXCL1-201ENST00000395761 NCKAP5LQ9HCH0 1330 aa24.65■■□□□ 1.54
CXCL1-201ENST00000395761 STRCQ7RTU9 1775 aa24.65■■□□□ 1.54
CXCL1-201ENST00000395761 SLC52A1Q9NWF4 448 aa24.65■■□□□ 1.54
CXCL1-201ENST00000395761 MPHOSPH9Q99550 1183 aa24.63■■□□□ 1.53
CXCL1-201ENST00000395761 PIK3C2BO00750 1634 aa24.63■■□□□ 1.53
CXCL1-201ENST00000395761 PLA2R1Q13018 1463 aa24.62■■□□□ 1.53
CXCL1-201ENST00000395761 FOXD1Q16676 465 aa24.61■■□□□ 1.53
CXCL1-201ENST00000395761 STAG3Q9UJ98 1225 aa24.61■■□□□ 1.53
CXCL1-201ENST00000395761 UBR1Q8IWV7 1749 aa24.61■■□□□ 1.53
CXCL1-201ENST00000395761 PTPRTO14522 1441 aa24.61■■□□□ 1.53
CXCL1-201ENST00000395761 ACIN1Q9UKV3 1341 aaKnown RBP24.59■■□□□ 1.53
CXCL1-201ENST00000395761 HRCP23327 699 aa24.58■■□□□ 1.53
CXCL1-201ENST00000395761 TRIM26Q12899 539 aaPredicted RBP24.58■■□□□ 1.53
CXCL1-201ENST00000395761 DMRT2Q9Y5R5 561 aa24.57■■□□□ 1.52
CXCL1-201ENST00000395761 ANKLE2Q86XL3 938 aa24.56■■□□□ 1.52
CXCL1-201ENST00000395761 SPHKAPQ2M3C7 1700 aa24.55■■□□□ 1.52
CXCL1-201ENST00000395761 CHGAP10645 457 aaKnown RBP24.54■■□□□ 1.52
CXCL1-201ENST00000395761 ADGRB3O60242 1522 aa24.53■■□□□ 1.52
CXCL1-201ENST00000395761 LTKP29376 864 aa24.53■■□□□ 1.52
CXCL1-201ENST00000395761 TMEM2Q9UHN6 1383 aa24.53■■□□□ 1.52
CXCL1-201ENST00000395761 ARHGAP23Q9P227 1491 aa24.52■■□□□ 1.52
CXCL1-201ENST00000395761 KDM5AP29375 1690 aaKnown RBP24.51■■□□□ 1.51
CXCL1-201ENST00000395761 TXNDC2Q86VQ3 553 aa24.51■■□□□ 1.51
CXCL1-201ENST00000395761 SLIT1O75093 1534 aa24.51■■□□□ 1.51
CXCL1-201ENST00000395761 TRPM2O94759 1503 aa24.51■■□□□ 1.51
CXCL1-201ENST00000395761 NEURL4Q96JN8 1562 aa24.5■■□□□ 1.51
CXCL1-201ENST00000395761 TMEM131LA2VDJ0 1609 aa24.5■■□□□ 1.51
CXCL1-201ENST00000395761 CLTCL1P53675 1640 aa24.48■■□□□ 1.51
CXCL1-201ENST00000395761 MYO5BQ9ULV0 1848 aa24.47■■□□□ 1.51
CXCL1-201ENST00000395761 POLR1AO95602 1720 aaPredicted RBP24.47■■□□□ 1.51
CXCL1-201ENST00000395761 EID1Q9Y6B2 187 aa24.46■■□□□ 1.51
CXCL1-201ENST00000395761 SCAF11Q99590 1463 aaKnown RBP24.45■■□□□ 1.51
CXCL1-201ENST00000395761 NPHP4O75161 1426 aaPredicted RBP24.45■■□□□ 1.51
CXCL1-201ENST00000395761 MED14O60244 1454 aa24.45■■□□□ 1.5
CXCL1-201ENST00000395761 RIMS2Q9UQ26 1411 aa24.43■■□□□ 1.5
CXCL1-201ENST00000395761 NUTM2DQ5VT03 806 aaPredicted RBP24.42■■□□□ 1.5
CXCL1-201ENST00000395761 ZFYVE9O95405 1425 aa24.42■■□□□ 1.5
CXCL1-201ENST00000395761 ZNF326Q5BKZ1 582 aaKnown RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms