RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 NEO1Q92859 1461 aa26.82■■□□□ 1.88
CCDC50-202ENST00000392456 TIMELESSQ9UNS1 1208 aa26.81■■□□□ 1.88
CCDC50-202ENST00000392456 TONSLQ96HA7 1378 aa26.81■■□□□ 1.88
CCDC50-202ENST00000392456 PPP1R15AO75807 674 aaPredicted RBP26.81■■□□□ 1.88
CCDC50-202ENST00000392456 ERBINQ96RT1 1412 aa26.81■■□□□ 1.88
CCDC50-202ENST00000392456 CFAP74Q9C0B2 1584 aa26.81■■□□□ 1.88
CCDC50-202ENST00000392456 KDM5DQ9BY66 1539 aa26.8■■□□□ 1.88
CCDC50-202ENST00000392456 MIER1Q8N108 512 aa26.79■■□□□ 1.88
CCDC50-202ENST00000392456 KIDINS220Q9ULH0 1771 aa26.78■■□□□ 1.88
CCDC50-202ENST00000392456 FAM135AQ9P2D6 1515 aa26.77■■□□□ 1.88
CCDC50-202ENST00000392456 TSPOAP1O95153 1857 aa26.76■■□□□ 1.87
CCDC50-202ENST00000392456 UNC13BO14795 1591 aa26.75■■□□□ 1.87
CCDC50-202ENST00000392456 KDM5CP41229 1560 aa26.74■■□□□ 1.87
CCDC50-202ENST00000392456 DHX29Q7Z478 1369 aaKnown RBP26.73■■□□□ 1.87
CCDC50-202ENST00000392456 KIF3BO15066 747 aa26.72■■□□□ 1.87
CCDC50-202ENST00000392456 L3MBTL2Q969R5 705 aa26.72■■□□□ 1.87
CCDC50-202ENST00000392456 RPRD2Q5VT52 1461 aaKnown RBP26.71■■□□□ 1.87
CCDC50-202ENST00000392456 MLH3Q9UHC1 1453 aa26.7■■□□□ 1.86
CCDC50-202ENST00000392456 PPRC1Q5VV67 1664 aaKnown RBP26.7■■□□□ 1.86
CCDC50-202ENST00000392456 MAGI2Q86UL8 1455 aa26.7■■□□□ 1.86
CCDC50-202ENST00000392456 KIF13AQ9H1H9 1805 aa26.67■■□□□ 1.86
CCDC50-202ENST00000392456 EIF5BO60841 1220 aaKnown RBP26.65■■□□□ 1.86
CCDC50-202ENST00000392456 IQGAP3Q86VI3 1631 aa26.65■■□□□ 1.86
CCDC50-202ENST00000392456 HECW2Q9P2P5 1572 aa26.65■■□□□ 1.86
CCDC50-202ENST00000392456 SALL2Q9Y467 1007 aaPredicted RBP26.64■■□□□ 1.86
CCDC50-202ENST00000392456 RICTORQ6R327 1708 aa26.64■■□□□ 1.86
CCDC50-202ENST00000392456 A2MP01023 1474 aa26.64■■□□□ 1.85
CCDC50-202ENST00000392456 FRMPD1Q5SYB0 1578 aa26.61■■□□□ 1.85
CCDC50-202ENST00000392456 YEATS2Q9ULM3 1422 aa26.61■■□□□ 1.85
CCDC50-202ENST00000392456 PLA2R1Q13018 1463 aa26.61■■□□□ 1.85
CCDC50-202ENST00000392456 ABCA6Q8N139 1617 aa26.61■■□□□ 1.85
CCDC50-202ENST00000392456 TEX14Q8IWB6 1497 aa26.6■■□□□ 1.85
CCDC50-202ENST00000392456 DEPDC5O75140 1603 aa26.58■■□□□ 1.85
CCDC50-202ENST00000392456 COL17A1Q9UMD9 1497 aaPredicted RBP26.58■■□□□ 1.84
CCDC50-202ENST00000392456 RBM19Q9Y4C8 960 aaKnown RBP26.57■■□□□ 1.84
CCDC50-202ENST00000392456 MROH1Q8NDA8 1641 aa26.56■■□□□ 1.84
CCDC50-202ENST00000392456 HIRIP3Q9BW71 556 aaPredicted RBP26.55■■□□□ 1.84
CCDC50-202ENST00000392456 NBPF8Q3BBV2 869 aa26.55■■□□□ 1.84
CCDC50-202ENST00000392456 GGT6Q6P531 493 aa26.55■■□□□ 1.84
CCDC50-202ENST00000392456 DIP2CQ9Y2E4 1556 aa26.54■■□□□ 1.84
CCDC50-202ENST00000392456 EIF2AK4Q9P2K8 1649 aaKnown RBP26.54■■□□□ 1.84
CCDC50-202ENST00000392456 MSH5O43196 834 aa26.53■■□□□ 1.84
CCDC50-202ENST00000392456 ERICH6BQ5W0A0 696 aa26.53■■□□□ 1.84
CCDC50-202ENST00000392456 VWDEQ8N2E2 1590 aa26.52■■□□□ 1.84
CCDC50-202ENST00000392456 PRDM15P57071 1507 aaPredicted RBP26.51■■□□□ 1.83
CCDC50-202ENST00000392456 DNAJC5Q9H3Z4 198 aa26.5■■□□□ 1.83
CCDC50-202ENST00000392456 KANK1Q14678 1352 aa26.5■■□□□ 1.83
CCDC50-202ENST00000392456 CCDC144AA2RUR9 1427 aa26.48■■□□□ 1.83
CCDC50-202ENST00000392456 E9PCH4 1651 aa26.48■■□□□ 1.83
CCDC50-202ENST00000392456 ZMYM4Q5VZL5 1548 aa26.45■■□□□ 1.82
CCDC50-202ENST00000392456 DEKP35659 375 aaKnown RBP26.45■■□□□ 1.82
CCDC50-202ENST00000392456 RGL3Q3MIN7 710 aa26.45■■□□□ 1.82
CCDC50-202ENST00000392456 CCDC136Q96JN2 1154 aa26.44■■□□□ 1.82
CCDC50-202ENST00000392456 ATP10AO60312 1499 aa26.43■■□□□ 1.82
CCDC50-202ENST00000392456 ZNF326Q5BKZ1 582 aaKnown RBP26.43■■□□□ 1.82
CCDC50-202ENST00000392456 RNF17Q9BXT8 1623 aaKnown RBP26.43■■□□□ 1.82
CCDC50-202ENST00000392456 KDM2AQ9Y2K7 1162 aa26.43■■□□□ 1.82
CCDC50-202ENST00000392456 TET3O43151 1660 aa26.42■■□□□ 1.82
CCDC50-202ENST00000392456 TRHP20396 242 aaPredicted RBP26.42■■□□□ 1.82
CCDC50-202ENST00000392456 DAXXQ9UER7 740 aaPredicted RBP26.42■■□□□ 1.82
CCDC50-202ENST00000392456 DCAF11Q8TEB1 546 aa26.41■■□□□ 1.82
CCDC50-202ENST00000392456 WASHC2CQ9Y4E1 1318 aa26.39■■□□□ 1.81
CCDC50-202ENST00000392456 PTPRTO14522 1441 aa26.38■■□□□ 1.81
CCDC50-202ENST00000392456 CEP152O94986 1710 aa26.38■■□□□ 1.81
CCDC50-202ENST00000392456 BCORL1Q5H9F3 1711 aa26.36■■□□□ 1.81
CCDC50-202ENST00000392456 EFCAB6Q5THR3 1501 aa26.35■■□□□ 1.81
CCDC50-202ENST00000392456 LMTK2Q8IWU2 1503 aa26.35■■□□□ 1.81
CCDC50-202ENST00000392456 ABCC3O15438 1527 aa26.32■■□□□ 1.8
CCDC50-202ENST00000392456 NPATQ14207 1427 aa26.32■■□□□ 1.8
CCDC50-202ENST00000392456 TRPM2O94759 1503 aa26.32■■□□□ 1.8
CCDC50-202ENST00000392456 HSPA5P11021 654 aaKnown RBP26.31■■□□□ 1.8
CCDC50-202ENST00000392456 SPHKAPQ2M3C7 1700 aa26.31■■□□□ 1.8
CCDC50-202ENST00000392456 UGGT1Q9NYU2 1555 aa26.31■■□□□ 1.8
CCDC50-202ENST00000392456 CFAP65Q6ZU64 1925 aaKnown RBP26.3■■□□□ 1.8
CCDC50-202ENST00000392456 SIGLEC1Q9BZZ2 1709 aa26.3■■□□□ 1.8
CCDC50-202ENST00000392456 CLTCL1P53675 1640 aa26.29■■□□□ 1.8
CCDC50-202ENST00000392456 SPATA31E1Q6ZUB1 1445 aa26.29■■□□□ 1.8
CCDC50-202ENST00000392456 UHRF1BP1Q6BDS2 1440 aa26.28■■□□□ 1.8
CCDC50-202ENST00000392456 EIF4G2P78344 907 aaKnown RBP eCLIP26.25■■□□□ 1.79
CCDC50-202ENST00000392456 MLECQ14165 292 aa26.25■■□□□ 1.79
CCDC50-202ENST00000392456 ARHGEF40Q8TER5 1519 aa26.21■■□□□ 1.79
CCDC50-202ENST00000392456 FANCIQ9NVI1 1328 aa26.21■■□□□ 1.79
CCDC50-202ENST00000392456 PKNOX2Q96KN3 472 aa26.21■■□□□ 1.79
CCDC50-202ENST00000392456 REREQ9P2R6 1566 aa26.2■■□□□ 1.79
CCDC50-202ENST00000392456 DDX10Q13206 875 aaKnown RBP26.2■■□□□ 1.78
CCDC50-202ENST00000392456 CAMSAP1Q5T5Y3 1602 aa26.2■■□□□ 1.78
CCDC50-202ENST00000392456 PRAG1Q86YV5 1406 aa26.2■■□□□ 1.78
CCDC50-202ENST00000392456 AGLP35573 1532 aa26.18■■□□□ 1.78
CCDC50-202ENST00000392456 NBPF1Q3BBV0 1214 aa26.18■■□□□ 1.78
CCDC50-202ENST00000392456 C11orf95C9JLR9 678 aaPredicted RBP26.17■■□□□ 1.78
CCDC50-202ENST00000392456 RALGAPBQ86X10 1494 aa26.16■■□□□ 1.78
CCDC50-202ENST00000392456 FBXO31Q5XUX0 539 aaPredicted RBP26.15■■□□□ 1.78
CCDC50-202ENST00000392456 CARD11Q9BXL7 1154 aa26.15■■□□□ 1.78
CCDC50-202ENST00000392456 NOS1P29475 1434 aa26.14■■□□□ 1.77
CCDC50-202ENST00000392456 CHGAP10645 457 aaKnown RBP26.13■■□□□ 1.77
CCDC50-202ENST00000392456 ARHGAP31Q2M1Z3 1444 aa26.13■■□□□ 1.77
CCDC50-202ENST00000392456 USP47Q96K76 1375 aa26.12■■□□□ 1.77
CCDC50-202ENST00000392456 CNTLNQ9NXG0 1405 aa26.12■■□□□ 1.77
CCDC50-202ENST00000392456 WASHC2AQ641Q2 1341 aa26.11■■□□□ 1.77
CCDC50-202ENST00000392456 PLEKHG5O94827 1062 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms