RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 SCAPERQ9BY12 1400 aa11.02□□□□□ -0.64
VPS36-201ENST00000378060 MBD5Q9P267 1494 aa11.02□□□□□ -0.64
VPS36-201ENST00000378060 DNMT1P26358 1616 aaKnown RBP11.02□□□□□ -0.65
VPS36-201ENST00000378060 ERICH6BQ5W0A0 696 aa11.01□□□□□ -0.65
VPS36-201ENST00000378060 COL17A1Q9UMD9 1497 aaPredicted RBP11.01□□□□□ -0.65
VPS36-201ENST00000378060 CROCC2H7BZ55 1655 aa11.01□□□□□ -0.65
VPS36-201ENST00000378060 STAG3Q9UJ98 1225 aa11□□□□□ -0.65
VPS36-201ENST00000378060 KDM6BO15054 1643 aa11□□□□□ -0.65
VPS36-201ENST00000378060 ESF1Q9H501 851 aaKnown RBP10.99□□□□□ -0.65
VPS36-201ENST00000378060 CARD11Q9BXL7 1154 aa10.98□□□□□ -0.65
VPS36-201ENST00000378060 ARAP3Q8WWN8 1544 aa10.98□□□□□ -0.65
VPS36-201ENST00000378060 CCDC141Q6ZP82 1450 aa10.98□□□□□ -0.65
VPS36-201ENST00000378060 C9orf84Q5VXU9 1444 aa10.97□□□□□ -0.65
VPS36-201ENST00000378060 SETD5Q9C0A6 1442 aa10.97□□□□□ -0.65
VPS36-201ENST00000378060 FRMPD1Q5SYB0 1578 aa10.97□□□□□ -0.65
VPS36-201ENST00000378060 MYH16Q9H6N6 1097 aa10.97□□□□□ -0.65
VPS36-201ENST00000378060 NOP58Q9Y2X3 529 aaKnown RBP10.97□□□□□ -0.65
VPS36-201ENST00000378060 KNSTRNQ9Y448 316 aa10.96□□□□□ -0.65
VPS36-201ENST00000378060 CFAP74Q9C0B2 1584 aa10.96□□□□□ -0.66
VPS36-201ENST00000378060 RICTORQ6R327 1708 aa10.96□□□□□ -0.66
VPS36-201ENST00000378060 ARHGEF5Q12774 1597 aa10.95□□□□□ -0.66
VPS36-201ENST00000378060 POGZQ7Z3K3 1410 aa10.95□□□□□ -0.66
VPS36-201ENST00000378060 NEO1Q92859 1461 aa10.95□□□□□ -0.66
VPS36-201ENST00000378060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS36-201ENST00000378060 KIAA1107Q9UPP5 1409 aa10.94□□□□□ -0.66
VPS36-201ENST00000378060 SPAG9O60271 1321 aaKnown RBP10.94□□□□□ -0.66
VPS36-201ENST00000378060 CFAP53Q96M91 514 aa10.94□□□□□ -0.66
VPS36-201ENST00000378060 ZFYVE16Q7Z3T8 1539 aa10.94□□□□□ -0.66
VPS36-201ENST00000378060 TEX14Q8IWB6 1497 aa10.94□□□□□ -0.66
VPS36-201ENST00000378060 ADGBQ8N7X0 1667 aa10.94□□□□□ -0.66
VPS36-201ENST00000378060 DENND4BO75064 1496 aaPredicted RBP10.93□□□□□ -0.66
VPS36-201ENST00000378060 YEATS2Q9ULM3 1422 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 GOLGA6L22H0YM25 854 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 RAB3GAP2Q9H2M9 1393 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 KIDINS220Q9ULH0 1771 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 RGL3Q3MIN7 710 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 RBM19Q9Y4C8 960 aaKnown RBP10.93□□□□□ -0.66
VPS36-201ENST00000378060 NAIPQ13075 1403 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 PLEKHH2Q8IVE3 1493 aa10.93□□□□□ -0.66
VPS36-201ENST00000378060 ZNF518AQ6AHZ1 1483 aa10.92□□□□□ -0.66
VPS36-201ENST00000378060 NCOA1Q15788 1441 aa10.92□□□□□ -0.66
VPS36-201ENST00000378060 ATP7AQ04656 1500 aa10.92□□□□□ -0.66
VPS36-201ENST00000378060 TRIM44Q96DX7 344 aaPredicted RBP10.91□□□□□ -0.66
VPS36-201ENST00000378060 KIF15Q9NS87 1388 aa10.91□□□□□ -0.66
VPS36-201ENST00000378060 INO80Q9ULG1 1556 aaPredicted RBP10.91□□□□□ -0.66
VPS36-201ENST00000378060 ABCA6Q8N139 1617 aa10.91□□□□□ -0.66
VPS36-201ENST00000378060 B4GALNT3Q6L9W6 998 aa10.91□□□□□ -0.66
VPS36-201ENST00000378060 ARXQ96QS3 562 aa10.91□□□□□ -0.66
VPS36-201ENST00000378060 KDM5CP41229 1560 aa10.9□□□□□ -0.66
VPS36-201ENST00000378060 SIGLEC1Q9BZZ2 1709 aa10.9□□□□□ -0.66
VPS36-201ENST00000378060 HECW2Q9P2P5 1572 aa10.9□□□□□ -0.66
VPS36-201ENST00000378060 GCC2Q8IWJ2 1684 aa10.9□□□□□ -0.67
VPS36-201ENST00000378060 HFM1A2PYH4 1435 aa10.89□□□□□ -0.67
VPS36-201ENST00000378060 SHANK2Q9UPX8 1470 aa10.89□□□□□ -0.67
VPS36-201ENST00000378060 ANKRD30AQ9BXX3 1397 aa10.89□□□□□ -0.67
VPS36-201ENST00000378060 ADGRL2O95490 1459 aa10.88□□□□□ -0.67
VPS36-201ENST00000378060 MAST1Q9Y2H9 1570 aa10.87□□□□□ -0.67
VPS36-201ENST00000378060 MS4A1P11836 297 aa10.87□□□□□ -0.67
VPS36-201ENST00000378060 PPP1R15AO75807 674 aaPredicted RBP10.87□□□□□ -0.67
VPS36-201ENST00000378060 FOXD1Q16676 465 aa10.87□□□□□ -0.67
VPS36-201ENST00000378060 DIP2CQ9Y2E4 1556 aa10.86□□□□□ -0.67
VPS36-201ENST00000378060 HSPA5P11021 654 aaKnown RBP10.86□□□□□ -0.67
VPS36-201ENST00000378060 ANKRD50Q9ULJ7 1429 aa10.86□□□□□ -0.67
VPS36-201ENST00000378060 NCLP19338 710 aaKnown RBP10.86□□□□□ -0.67
VPS36-201ENST00000378060 PLXNC1O60486 1568 aa10.86□□□□□ -0.67
VPS36-201ENST00000378060 ROCK1Q13464 1354 aa10.86□□□□□ -0.67
VPS36-201ENST00000378060 RSPH4AQ5TD94 716 aa10.85□□□□□ -0.67
VPS36-201ENST00000378060 CHMP4BQ9H444 224 aaKnown RBP10.85□□□□□ -0.67
VPS36-201ENST00000378060 MLECQ14165 292 aa10.85□□□□□ -0.67
VPS36-201ENST00000378060 FTSJ3Q8IY81 847 aaKnown RBP10.85□□□□□ -0.67
VPS36-201ENST00000378060 TSHZ2Q9NRE2 1034 aa10.84□□□□□ -0.67
VPS36-201ENST00000378060 LAS1LQ9Y4W2 734 aaKnown RBP10.84□□□□□ -0.67
VPS36-201ENST00000378060 TMF1P82094 1093 aa10.84□□□□□ -0.67
VPS36-201ENST00000378060 MLH3Q9UHC1 1453 aa10.84□□□□□ -0.67
VPS36-201ENST00000378060 KIF3BO15066 747 aa10.84□□□□□ -0.67
VPS36-201ENST00000378060 NUDCQ9Y266 331 aa10.84□□□□□ -0.67
VPS36-201ENST00000378060 RGS3P49796 1198 aa10.83□□□□□ -0.68
VPS36-201ENST00000378060 ZMYM4Q5VZL5 1548 aa10.83□□□□□ -0.68
VPS36-201ENST00000378060 GGT6Q6P531 493 aa10.83□□□□□ -0.68
VPS36-201ENST00000378060 RTEL1-TNFRSF6BF6WH68 1400 aa10.82□□□□□ -0.68
VPS36-201ENST00000378060 SENP3-EIF4A1A0A087X0R7 540 aa10.82□□□□□ -0.68
VPS36-201ENST00000378060 A2MP01023 1474 aa10.82□□□□□ -0.68
VPS36-201ENST00000378060 DUOX2Q9NRD8 1548 aa10.82□□□□□ -0.68
VPS36-201ENST00000378060 DEKP35659 375 aaKnown RBP10.81□□□□□ -0.68
VPS36-201ENST00000378060 CASC1Q6TDU7 716 aa10.81□□□□□ -0.68
VPS36-201ENST00000378060 DCAF11Q8TEB1 546 aa10.81□□□□□ -0.68
VPS36-201ENST00000378060 ARHGEF40Q8TER5 1519 aa10.8□□□□□ -0.68
VPS36-201ENST00000378060 TCERG1O14776 1098 aaKnown RBP10.8□□□□□ -0.68
VPS36-201ENST00000378060 MAPK8IP3Q9UPT6 1336 aa10.8□□□□□ -0.68
VPS36-201ENST00000378060 DHX57Q6P158 1386 aaKnown RBP10.8□□□□□ -0.68
VPS36-201ENST00000378060 ARID4BQ4LE39 1312 aaPredicted RBP10.8□□□□□ -0.68
VPS36-201ENST00000378060 DHX29Q7Z478 1369 aaKnown RBP10.8□□□□□ -0.68
VPS36-201ENST00000378060 NUP155O75694 1391 aa10.79□□□□□ -0.68
VPS36-201ENST00000378060 RALBP1Q15311 655 aa10.79□□□□□ -0.68
VPS36-201ENST00000378060 PLPPR3Q6T4P5 718 aa10.79□□□□□ -0.68
VPS36-201ENST00000378060 CC2D1BQ5T0F9 858 aaKnown RBP10.79□□□□□ -0.68
VPS36-201ENST00000378060 MROH1Q8NDA8 1641 aa10.78□□□□□ -0.68
VPS36-201ENST00000378060 ERBINQ96RT1 1412 aa10.78□□□□□ -0.68
VPS36-201ENST00000378060 NEUROD2Q15784 382 aa10.78□□□□□ -0.68
VPS36-201ENST00000378060 FRAT1Q92837 279 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms