RNA–Protein interactions for RNA: ENST00000377270.7

FXN-201, Transcript of frataxin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FXN, Length 2,608 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-201ENST00000377270 KIF15Q9NS87 1388 aa20.78■□□□□ 0.92
FXN-201ENST00000377270 MBD5Q9P267 1494 aa20.78■□□□□ 0.92
FXN-201ENST00000377270 CCDC7Q96M83 1385 aa20.78■□□□□ 0.92
FXN-201ENST00000377270 SHROOM2Q13796 1616 aa20.77■□□□□ 0.92
FXN-201ENST00000377270 HNRNPUQ00839 825 aaKnown RBP eCLIP20.76■□□□□ 0.91
FXN-201ENST00000377270 ZBTB47Q9UFB7 747 aaPredicted RBP20.76■□□□□ 0.91
FXN-201ENST00000377270 ARHGEF5Q12774 1597 aa20.76■□□□□ 0.91
FXN-201ENST00000377270 IPO9Q96P70 1041 aaKnown RBP20.76■□□□□ 0.91
FXN-201ENST00000377270 ZNF326Q5BKZ1 582 aaKnown RBP20.75■□□□□ 0.91
FXN-201ENST00000377270 ERCC6L2Q5T890 1561 aa20.75■□□□□ 0.91
FXN-201ENST00000377270 CNTLNQ9NXG0 1405 aa20.75■□□□□ 0.91
FXN-201ENST00000377270 CDC42BPBQ9Y5S2 1711 aa20.75■□□□□ 0.91
FXN-201ENST00000377270 SPATA31E1Q6ZUB1 1445 aa20.74■□□□□ 0.91
FXN-201ENST00000377270 SAMD9LQ8IVG5 1584 aa20.74■□□□□ 0.91
FXN-201ENST00000377270 HSP90AA2PQ14568 343 aaPredicted RBP20.74■□□□□ 0.91
FXN-201ENST00000377270 RSPH4AQ5TD94 716 aa20.74■□□□□ 0.91
FXN-201ENST00000377270 CCDC141Q6ZP82 1450 aa20.73■□□□□ 0.91
FXN-201ENST00000377270 PREX2Q70Z35 1606 aa20.73■□□□□ 0.91
FXN-201ENST00000377270 FAM43AQ8N2R8 423 aa20.72■□□□□ 0.91
FXN-201ENST00000377270 TAF7LQ5H9L4 462 aa20.71■□□□□ 0.91
FXN-201ENST00000377270 KIF7Q2M1P5 1343 aa20.7■□□□□ 0.9
FXN-201ENST00000377270 USP35Q9P2H5 1018 aa20.7■□□□□ 0.9
FXN-201ENST00000377270 ABCC2Q92887 1545 aa20.69■□□□□ 0.9
FXN-201ENST00000377270 ARHGAP5Q13017 1502 aa20.69■□□□□ 0.9
FXN-201ENST00000377270 ANP32AP39687 249 aaKnown RBP20.69■□□□□ 0.9
FXN-201ENST00000377270 TTC37Q6PGP7 1564 aa20.68■□□□□ 0.9
FXN-201ENST00000377270 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.68■□□□□ 0.9
FXN-201ENST00000377270 KDM5DQ9BY66 1539 aa20.68■□□□□ 0.9
FXN-201ENST00000377270 RRP9O43818 475 aaKnown RBP20.67■□□□□ 0.9
FXN-201ENST00000377270 SYCP2Q9BX26 1530 aa20.66■□□□□ 0.9
FXN-201ENST00000377270 B4GALNT3Q6L9W6 998 aa20.65■□□□□ 0.9
FXN-201ENST00000377270 PRKRIP1Q9H875 184 aaPredicted RBP20.65■□□□□ 0.9
FXN-201ENST00000377270 USP47Q96K76 1375 aa20.64■□□□□ 0.89
FXN-201ENST00000377270 KDM2AQ9Y2K7 1162 aa20.63■□□□□ 0.89
FXN-201ENST00000377270 CCDC184Q52MB2 194 aa20.62■□□□□ 0.89
FXN-201ENST00000377270 UHRF1BP1Q6BDS2 1440 aa20.6■□□□□ 0.89
FXN-201ENST00000377270 FAM135AQ9P2D6 1515 aa20.6■□□□□ 0.89
FXN-201ENST00000377270 DCAF11Q8TEB1 546 aa20.6■□□□□ 0.89
FXN-201ENST00000377270 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.6■□□□□ 0.89
FXN-201ENST00000377270 POLR3GLQ9BT43 218 aa20.6■□□□□ 0.89
FXN-201ENST00000377270 GSE1Q14687 1217 aa20.59■□□□□ 0.89
FXN-201ENST00000377270 LAS1LQ9Y4W2 734 aaKnown RBP20.59■□□□□ 0.89
FXN-201ENST00000377270 POLR1AO95602 1720 aaPredicted RBP20.59■□□□□ 0.89
FXN-201ENST00000377270 MYO5CQ9NQX4 1742 aa20.59■□□□□ 0.89
FXN-201ENST00000377270 CLASP1Q7Z460 1538 aa20.58■□□□□ 0.89
FXN-201ENST00000377270 CARD11Q9BXL7 1154 aa20.58■□□□□ 0.89
FXN-201ENST00000377270 PLEKHH2Q8IVE3 1493 aa20.58■□□□□ 0.88
FXN-201ENST00000377270 ARHGEF12Q9NZN5 1544 aa20.57■□□□□ 0.88
FXN-201ENST00000377270 MAST1Q9Y2H9 1570 aa20.57■□□□□ 0.88
FXN-201ENST00000377270 RALGAPBQ86X10 1494 aa20.56■□□□□ 0.88
FXN-201ENST00000377270 NCBP3Q53F19 620 aaKnown RBP20.56■□□□□ 0.88
FXN-201ENST00000377270 MRS2Q9HD23 443 aa20.56■□□□□ 0.88
FXN-201ENST00000377270 ZCCHC11Q5TAX3 1644 aaKnown RBP20.55■□□□□ 0.88
FXN-201ENST00000377270 EFCAB2Q5VUJ9 269 aa20.55■□□□□ 0.88
FXN-201ENST00000377270 KDM5CP41229 1560 aa20.55■□□□□ 0.88
FXN-201ENST00000377270 PLCH2O75038 1416 aa20.55■□□□□ 0.88
FXN-201ENST00000377270 BCORL1Q5H9F3 1711 aa20.55■□□□□ 0.88
FXN-201ENST00000377270 FAM9BQ8IZU0 186 aa20.54■□□□□ 0.88
FXN-201ENST00000377270 UHRF1BP1LA0JNW5 1464 aa20.54■□□□□ 0.88
FXN-201ENST00000377270 HSP90AA1P07900 732 aaKnown RBP20.53■□□□□ 0.88
FXN-201ENST00000377270 CCDC144AA2RUR9 1427 aa20.52■□□□□ 0.87
FXN-201ENST00000377270 ARID4BQ4LE39 1312 aaPredicted RBP20.51■□□□□ 0.87
FXN-201ENST00000377270 CNGB1Q14028 1251 aaPredicted RBP20.51■□□□□ 0.87
FXN-201ENST00000377270 RGL3Q3MIN7 710 aa20.5■□□□□ 0.87
FXN-201ENST00000377270 PAXIP1Q6ZW49 1069 aaPredicted RBP20.5■□□□□ 0.87
FXN-201ENST00000377270 UNC13BO14795 1591 aa20.5■□□□□ 0.87
FXN-201ENST00000377270 PLXNC1O60486 1568 aa20.5■□□□□ 0.87
FXN-201ENST00000377270 ST20-MTHFSA0A0A6YYL1 179 aa20.49■□□□□ 0.87
FXN-201ENST00000377270 PRDM4Q9UKN5 801 aa20.49■□□□□ 0.87
FXN-201ENST00000377270 DHX29Q7Z478 1369 aaKnown RBP20.48■□□□□ 0.87
FXN-201ENST00000377270 DUOX2Q9NRD8 1548 aa20.48■□□□□ 0.87
FXN-201ENST00000377270 PLA2R1Q13018 1463 aa20.47■□□□□ 0.87
FXN-201ENST00000377270 ROCK2O75116 1388 aaKnown RBP20.47■□□□□ 0.87
FXN-201ENST00000377270 NAP1L2Q9ULW6 460 aaPredicted RBP20.46■□□□□ 0.87
FXN-201ENST00000377270 FRAT1Q92837 279 aaPredicted RBP20.45■□□□□ 0.86
FXN-201ENST00000377270 TRAPPC8Q9Y2L5 1435 aa20.45■□□□□ 0.86
FXN-201ENST00000377270 ERBINQ96RT1 1412 aa20.43■□□□□ 0.86
FXN-201ENST00000377270 RGS3P49796 1198 aa20.43■□□□□ 0.86
FXN-201ENST00000377270 NAP1L5Q96NT1 182 aaPredicted RBP20.43■□□□□ 0.86
FXN-201ENST00000377270 IQGAP3Q86VI3 1631 aa20.43■□□□□ 0.86
FXN-201ENST00000377270 ABCC1P33527 1531 aa20.43■□□□□ 0.86
FXN-201ENST00000377270 PPM1GO15355 546 aaPredicted RBP20.42■□□□□ 0.86
FXN-201ENST00000377270 ZBED9Q6R2W3 1325 aa20.42■□□□□ 0.86
FXN-201ENST00000377270 PRAG1Q86YV5 1406 aa20.42■□□□□ 0.86
FXN-201ENST00000377270 AFAP1Q8N556 730 aa20.41■□□□□ 0.86
FXN-201ENST00000377270 BBXQ8WY36 941 aaPredicted RBP20.41■□□□□ 0.86
FXN-201ENST00000377270 SPAG9O60271 1321 aaKnown RBP20.41■□□□□ 0.86
FXN-201ENST00000377270 RRAGDQ9NQL2 400 aaPredicted RBP20.4■□□□□ 0.86
FXN-201ENST00000377270 NBPF1Q3BBV0 1214 aa20.39■□□□□ 0.85
FXN-201ENST00000377270 CHMP4BQ9H444 224 aaKnown RBP20.39■□□□□ 0.85
FXN-201ENST00000377270 A2MP01023 1474 aa20.38■□□□□ 0.85
FXN-201ENST00000377270 ARXQ96QS3 562 aa20.38■□□□□ 0.85
FXN-201ENST00000377270 MAGI2Q86UL8 1455 aa20.38■□□□□ 0.85
FXN-201ENST00000377270 CALD1Q05682 793 aaKnown RBP20.37■□□□□ 0.85
FXN-201ENST00000377270 TRPM1Q7Z4N2 1603 aa20.36■□□□□ 0.85
FXN-201ENST00000377270 ATP10AO60312 1499 aa20.34■□□□□ 0.85
FXN-201ENST00000377270 WDR7Q9Y4E6 1490 aa20.34■□□□□ 0.85
FXN-201ENST00000377270 RTEL1-TNFRSF6BF6WH68 1400 aa20.33■□□□□ 0.85
FXN-201ENST00000377270 ARAP3Q8WWN8 1544 aa20.33■□□□□ 0.84
FXN-201ENST00000377270 GTF2E1P29083 439 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms