RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 SENP3-EIF4A1A0A087X0R7 540 aa19.65■□□□□ 0.74
MSH5-201ENST00000375703 RALBP1Q15311 655 aa19.65■□□□□ 0.74
MSH5-201ENST00000375703 RNF123Q5XPI4 1314 aa19.64■□□□□ 0.73
MSH5-201ENST00000375703 MYBBP1AQ9BQG0 1328 aaKnown RBP19.63■□□□□ 0.73
MSH5-201ENST00000375703 KTN1Q86UP2 1357 aaKnown RBP19.62■□□□□ 0.73
MSH5-201ENST00000375703 FAM135AQ9P2D6 1515 aa19.62■□□□□ 0.73
MSH5-201ENST00000375703 BRD4O60885 1362 aaPredicted RBP19.61■□□□□ 0.73
MSH5-201ENST00000375703 RGL3Q3MIN7 710 aa19.61■□□□□ 0.73
MSH5-201ENST00000375703 SAMD9LQ8IVG5 1584 aa19.61■□□□□ 0.73
MSH5-201ENST00000375703 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
MSH5-201ENST00000375703 CCDC144AA2RUR9 1427 aa19.6■□□□□ 0.73
MSH5-201ENST00000375703 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.59■□□□□ 0.734e-7■■□□□ 12.9
MSH5-201ENST00000375703 LRPPRCP42704 1394 aaKnown RBP19.58■□□□□ 0.73
MSH5-201ENST00000375703 CCDC136Q96JN2 1154 aa19.58■□□□□ 0.73
MSH5-201ENST00000375703 CDC42BPBQ9Y5S2 1711 aa19.58■□□□□ 0.72
MSH5-201ENST00000375703 NBPF1Q3BBV0 1214 aa19.57■□□□□ 0.72
MSH5-201ENST00000375703 PRAG1Q86YV5 1406 aa19.57■□□□□ 0.72
MSH5-201ENST00000375703 PREX2Q70Z35 1606 aa19.56■□□□□ 0.72
MSH5-201ENST00000375703 NLRP13Q86W25 1043 aa19.53■□□□□ 0.72
MSH5-201ENST00000375703 SYCP2Q9BX26 1530 aa19.53■□□□□ 0.72
MSH5-201ENST00000375703 ARHGAP5Q13017 1502 aa19.52■□□□□ 0.72
MSH5-201ENST00000375703 PLA2R1Q13018 1463 aa19.52■□□□□ 0.72
MSH5-201ENST00000375703 PER1O15534 1290 aaPredicted RBP19.51■□□□□ 0.71
MSH5-201ENST00000375703 TRPM1Q7Z4N2 1603 aa19.5■□□□□ 0.71
MSH5-201ENST00000375703 E9PCH4 1651 aa19.5■□□□□ 0.71
MSH5-201ENST00000375703 GPRASP1Q5JY77 1395 aa19.49■□□□□ 0.71
MSH5-201ENST00000375703 PARD3Q8TEW0 1356 aa19.49■□□□□ 0.71
MSH5-201ENST00000375703 MAST1Q9Y2H9 1570 aa19.48■□□□□ 0.71
MSH5-201ENST00000375703 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.48■□□□□ 0.71
MSH5-201ENST00000375703 PRKCSHP14314 528 aaPredicted RBP19.48■□□□□ 0.71
MSH5-201ENST00000375703 SALL2Q9Y467 1007 aaPredicted RBP19.48■□□□□ 0.71
MSH5-201ENST00000375703 A2MP01023 1474 aa19.48■□□□□ 0.71
MSH5-201ENST00000375703 PLEKHH2Q8IVE3 1493 aa19.48■□□□□ 0.71
MSH5-201ENST00000375703 UNC13BO14795 1591 aa19.47■□□□□ 0.71
MSH5-201ENST00000375703 TTC37Q6PGP7 1564 aa19.46■□□□□ 0.71
MSH5-201ENST00000375703 TESK2Q96S53 571 aa19.46■□□□□ 0.71
MSH5-201ENST00000375703 WASHC2CQ9Y4E1 1318 aa19.45■□□□□ 0.7
MSH5-201ENST00000375703 PDE3BQ13370 1112 aa19.45■□□□□ 0.7
MSH5-201ENST00000375703 RRP1P56182 461 aaKnown RBP19.44■□□□□ 0.7
MSH5-201ENST00000375703 CC2D1BQ5T0F9 858 aaKnown RBP19.44■□□□□ 0.7
MSH5-201ENST00000375703 PANK3Q9H999 370 aa19.44■□□□□ 0.7
MSH5-201ENST00000375703 RCAN3Q9UKA8 241 aa19.44■□□□□ 0.7
MSH5-201ENST00000375703 DISP3Q9P2K9 1392 aa19.43■□□□□ 0.7
MSH5-201ENST00000375703 TMF1P82094 1093 aa19.43■□□□□ 0.7
MSH5-201ENST00000375703 COL17A1Q9UMD9 1497 aaPredicted RBP19.42■□□□□ 0.7
MSH5-201ENST00000375703 IQGAP3Q86VI3 1631 aa19.41■□□□□ 0.7
MSH5-201ENST00000375703 DUOX2Q9NRD8 1548 aa19.41■□□□□ 0.7
MSH5-201ENST00000375703 PLXNC1O60486 1568 aa19.41■□□□□ 0.7
MSH5-201ENST00000375703 ERBINQ96RT1 1412 aa19.4■□□□□ 0.7
MSH5-201ENST00000375703 PRDM15P57071 1507 aaPredicted RBP19.4■□□□□ 0.7
MSH5-201ENST00000375703 EFCAB2Q5VUJ9 269 aa19.39■□□□□ 0.7
MSH5-201ENST00000375703 EXOC6Q8TAG9 804 aa19.39■□□□□ 0.69
MSH5-201ENST00000375703 ATP10AO60312 1499 aa19.39■□□□□ 0.69
MSH5-201ENST00000375703 CHD1O14646 1710 aa19.39■□□□□ 0.69
MSH5-201ENST00000375703 LAMC1P11047 1609 aa19.39■□□□□ 0.69
MSH5-201ENST00000375703 ABCC2Q92887 1545 aa19.39■□□□□ 0.69
MSH5-201ENST00000375703 MYO5CQ9NQX4 1742 aa19.38■□□□□ 0.69
MSH5-201ENST00000375703 SHROOM2Q13796 1616 aa19.37■□□□□ 0.69
MSH5-201ENST00000375703 NOP58Q9Y2X3 529 aaKnown RBP19.37■□□□□ 0.69
MSH5-201ENST00000375703 PLCH2O75038 1416 aa19.37■□□□□ 0.69
MSH5-201ENST00000375703 CDCA7LQ96GN5 454 aa19.37■□□□□ 0.69
MSH5-201ENST00000375703 EIF2AK4Q9P2K8 1649 aaKnown RBP19.36■□□□□ 0.69
MSH5-201ENST00000375703 ERCC6L2Q5T890 1561 aa19.35■□□□□ 0.69
MSH5-201ENST00000375703 MAGI2Q86UL8 1455 aa19.34■□□□□ 0.69
MSH5-201ENST00000375703 ANP32AP39687 249 aaKnown RBP19.34■□□□□ 0.69
MSH5-201ENST00000375703 INSRP06213 1382 aa19.32■□□□□ 0.68
MSH5-201ENST00000375703 PAK3O75914 559 aaPredicted RBP19.3■□□□□ 0.68
MSH5-201ENST00000375703 IPO9Q96P70 1041 aaKnown RBP19.3■□□□□ 0.68
MSH5-201ENST00000375703 TRAPPC8Q9Y2L5 1435 aa19.3■□□□□ 0.68
MSH5-201ENST00000375703 MYT1LQ9UL68 1186 aa19.29■□□□□ 0.68
MSH5-201ENST00000375703 BLMP54132 1417 aaPredicted RBP19.29■□□□□ 0.68
MSH5-201ENST00000375703 KNSTRNQ9Y448 316 aa19.29■□□□□ 0.68
MSH5-201ENST00000375703 SPAG9O60271 1321 aaKnown RBP19.28■□□□□ 0.68
MSH5-201ENST00000375703 ZMYM4Q5VZL5 1548 aa19.27■□□□□ 0.68
MSH5-201ENST00000375703 TCERG1O14776 1098 aaKnown RBP19.27■□□□□ 0.68
MSH5-201ENST00000375703 AFAP1Q8N556 730 aa19.27■□□□□ 0.67
MSH5-201ENST00000375703 ADAMTS8Q9UP79 889 aa19.27■□□□□ 0.67
MSH5-201ENST00000375703 PLIN1O60240 522 aa19.26■□□□□ 0.67
MSH5-201ENST00000375703 STAC3Q96MF2 364 aa19.25■□□□□ 0.67
MSH5-201ENST00000375703 ABCC1P33527 1531 aa19.25■□□□□ 0.67
MSH5-201ENST00000375703 CDCA8Q53HL2 280 aa19.25■□□□□ 0.67
MSH5-201ENST00000375703 ZBTB47Q9UFB7 747 aaPredicted RBP19.25■□□□□ 0.67
MSH5-201ENST00000375703 ZCCHC11Q5TAX3 1644 aaKnown RBP19.24■□□□□ 0.67
MSH5-201ENST00000375703 WDR7Q9Y4E6 1490 aa19.24■□□□□ 0.67
MSH5-201ENST00000375703 RNF17Q9BXT8 1623 aaKnown RBP19.23■□□□□ 0.67
MSH5-201ENST00000375703 PPP2R1AP30153 589 aa19.23■□□□□ 0.67
MSH5-201ENST00000375703 RTEL1-TNFRSF6BF6WH68 1400 aa19.22■□□□□ 0.67
MSH5-201ENST00000375703 UHRF1BP1LA0JNW5 1464 aa19.22■□□□□ 0.67
MSH5-201ENST00000375703 WDR43Q15061 677 aaKnown RBP eCLIP19.22■□□□□ 0.67
MSH5-201ENST00000375703 AMER1Q5JTC6 1135 aaPredicted RBP19.21■□□□□ 0.67
MSH5-201ENST00000375703 NBR1Q14596 966 aa19.2■□□□□ 0.66
MSH5-201ENST00000375703 PDE4AP27815 886 aa19.2■□□□□ 0.66
MSH5-201ENST00000375703 CRBNQ96SW2 442 aa19.2■□□□□ 0.66
MSH5-201ENST00000375703 MADDQ8WXG6 1647 aa19.2■□□□□ 0.66
MSH5-201ENST00000375703 SCAF11Q99590 1463 aaKnown RBP19.19■□□□□ 0.66
MSH5-201ENST00000375703 PTPRTO14522 1441 aa19.19■□□□□ 0.66
MSH5-201ENST00000375703 MS4A1P11836 297 aa19.19■□□□□ 0.66
MSH5-201ENST00000375703 TRPM2O94759 1503 aa19.18■□□□□ 0.66
MSH5-201ENST00000375703 SCAPERQ9BY12 1400 aa19.18■□□□□ 0.66
MSH5-201ENST00000375703 NPM2Q86SE8 214 aaKnown RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms