RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 KIF15Q9NS87 1388 aa15.18■□□□□ 0.02
CCDC40-203ENST00000374877 SCAPERQ9BY12 1400 aa15.18■□□□□ 0.02
CCDC40-203ENST00000374877 CNTLNQ9NXG0 1405 aa15.18■□□□□ 0.02
CCDC40-203ENST00000374877 ANKRD50Q9ULJ7 1429 aa15.18■□□□□ 0.02
CCDC40-203ENST00000374877 PRKRIP1Q9H875 184 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-203ENST00000374877 FOXD1Q16676 465 aa15.15■□□□□ 0.02
CCDC40-203ENST00000374877 L3MBTL2Q969R5 705 aa15.15■□□□□ 0.02
CCDC40-203ENST00000374877 ZFYVE16Q7Z3T8 1539 aa15.15■□□□□ 0.02
CCDC40-203ENST00000374877 C11orf95C9JLR9 678 aaPredicted RBP15.15■□□□□ 0.02
CCDC40-203ENST00000374877 ZNF518AQ6AHZ1 1483 aa15.15■□□□□ 0.02
CCDC40-203ENST00000374877 DUOX2Q9NRD8 1548 aa15.14■□□□□ 0.01
CCDC40-203ENST00000374877 INO80Q9ULG1 1556 aaPredicted RBP15.14■□□□□ 0.01
CCDC40-203ENST00000374877 SPAG9O60271 1321 aaKnown RBP15.14■□□□□ 0.01
CCDC40-203ENST00000374877 POGZQ7Z3K3 1410 aa15.14■□□□□ 0.01
CCDC40-203ENST00000374877 FAM69CQ0P6D2 419 aa15.13■□□□□ 0.01
CCDC40-203ENST00000374877 ERBINQ96RT1 1412 aa15.13■□□□□ 0.01
CCDC40-203ENST00000374877 KDM5CP41229 1560 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 KDM5DQ9BY66 1539 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 CCDC7Q96M83 1385 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 CNGB1Q14028 1251 aaPredicted RBP15.12■□□□□ 0.01
CCDC40-203ENST00000374877 MPHOSPH9Q99550 1183 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 ZBED9Q6R2W3 1325 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 ATP7AQ04656 1500 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 TEX14Q8IWB6 1497 aa15.12■□□□□ 0.01
CCDC40-203ENST00000374877 AFAP1Q8N556 730 aa15.1■□□□□ 0.01
CCDC40-203ENST00000374877 DENND4BO75064 1496 aaPredicted RBP15.1■□□□□ 0.01
CCDC40-203ENST00000374877 MLH3Q9UHC1 1453 aa15.1■□□□□ 0.01
CCDC40-203ENST00000374877 PPRC1Q5VV67 1664 aaKnown RBP15.08■□□□□ 0
CCDC40-203ENST00000374877 PZPP20742 1482 aa15.08■□□□□ 0
CCDC40-203ENST00000374877 UNC13BO14795 1591 aa15.08■□□□□ 0
CCDC40-203ENST00000374877 DNAJC5Q9H3Z4 198 aa15.07■□□□□ 0
CCDC40-203ENST00000374877 KIF13AQ9H1H9 1805 aa15.07■□□□□ 0
CCDC40-203ENST00000374877 NBPF8Q3BBV2 869 aa15.06■□□□□ 0
CCDC40-203ENST00000374877 HECW2Q9P2P5 1572 aa15.06■□□□□ 0
CCDC40-203ENST00000374877 MAGI2Q86UL8 1455 aa15.05■□□□□ 0
CCDC40-203ENST00000374877 POLR3GLQ9BT43 218 aa15.05■□□□□ -0
CCDC40-203ENST00000374877 MYT1LQ9UL68 1186 aa15.05■□□□□ -0
CCDC40-203ENST00000374877 KIDINS220Q9ULH0 1771 aa15.05■□□□□ -0
CCDC40-203ENST00000374877 DEKP35659 375 aaKnown RBP15.05■□□□□ -0
CCDC40-203ENST00000374877 KIF7Q2M1P5 1343 aa15.05■□□□□ -0
CCDC40-203ENST00000374877 NBR1Q14596 966 aa15.04■□□□□ -0
CCDC40-203ENST00000374877 EIF2AK4Q9P2K8 1649 aaKnown RBP15.04■□□□□ -0
CCDC40-203ENST00000374877 NOP58Q9Y2X3 529 aaKnown RBP15.04■□□□□ -0
CCDC40-203ENST00000374877 RICTORQ6R327 1708 aa15.04■□□□□ -0
CCDC40-203ENST00000374877 DHX29Q7Z478 1369 aaKnown RBP15.03■□□□□ -0
CCDC40-203ENST00000374877 ZMYM4Q5VZL5 1548 aa15.03■□□□□ -0
CCDC40-203ENST00000374877 NUP155O75694 1391 aa15.03■□□□□ -0
CCDC40-203ENST00000374877 SENP3-EIF4A1A0A087X0R7 540 aa15.02■□□□□ -0
CCDC40-203ENST00000374877 SLC4A1APQ9BWU0 796 aaKnown RBP15.02■□□□□ -0
CCDC40-203ENST00000374877 FRMPD1Q5SYB0 1578 aa15.01□□□□□ -0.01
CCDC40-203ENST00000374877 IQGAP3Q86VI3 1631 aa15□□□□□ -0.01
CCDC40-203ENST00000374877 CCDC136Q96JN2 1154 aa15□□□□□ -0.01
CCDC40-203ENST00000374877 DEPDC5O75140 1603 aa15□□□□□ -0.01
CCDC40-203ENST00000374877 FAM135AQ9P2D6 1515 aa15□□□□□ -0.01
CCDC40-203ENST00000374877 PAK3O75914 559 aaPredicted RBP15□□□□□ -0.01
CCDC40-203ENST00000374877 ANKRD30BQ9BXX2 1392 aa14.99□□□□□ -0.01
CCDC40-203ENST00000374877 A2MP01023 1474 aa14.99□□□□□ -0.01
CCDC40-203ENST00000374877 ZNF326Q5BKZ1 582 aaKnown RBP14.97□□□□□ -0.01
CCDC40-203ENST00000374877 BCORL1Q5H9F3 1711 aa14.97□□□□□ -0.01
CCDC40-203ENST00000374877 ABCA6Q8N139 1617 aa14.97□□□□□ -0.01
CCDC40-203ENST00000374877 TSPOAP1O95153 1857 aa14.97□□□□□ -0.01
CCDC40-203ENST00000374877 RPRD2Q5VT52 1461 aaKnown RBP14.97□□□□□ -0.01
CCDC40-203ENST00000374877 RAPGEF3O95398 923 aa14.97□□□□□ -0.01
CCDC40-203ENST00000374877 NUDCQ9Y266 331 aa14.96□□□□□ -0.01
CCDC40-203ENST00000374877 DIP2CQ9Y2E4 1556 aa14.96□□□□□ -0.01
CCDC40-203ENST00000374877 ANP32AP39687 249 aaKnown RBP14.96□□□□□ -0.02
CCDC40-203ENST00000374877 SMG6Q86US8 1419 aaKnown RBP14.95□□□□□ -0.02
CCDC40-203ENST00000374877 VWDEQ8N2E2 1590 aa14.95□□□□□ -0.02
CCDC40-203ENST00000374877 PRDM15P57071 1507 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-203ENST00000374877 PKD2Q13563 968 aa14.95□□□□□ -0.02
CCDC40-203ENST00000374877 RNF17Q9BXT8 1623 aaKnown RBP14.95□□□□□ -0.02
CCDC40-203ENST00000374877 SPATA31E1Q6ZUB1 1445 aa14.95□□□□□ -0.02
CCDC40-203ENST00000374877 KANK1Q14678 1352 aa14.93□□□□□ -0.02
CCDC40-203ENST00000374877 REREQ9P2R6 1566 aa14.93□□□□□ -0.02
CCDC40-203ENST00000374877 MROH1Q8NDA8 1641 aa14.92□□□□□ -0.02
CCDC40-203ENST00000374877 LMTK2Q8IWU2 1503 aa14.91□□□□□ -0.02
CCDC40-203ENST00000374877 KIF3BO15066 747 aa14.9□□□□□ -0.02
CCDC40-203ENST00000374877 YEATS2Q9ULM3 1422 aa14.9□□□□□ -0.02
CCDC40-203ENST00000374877 IPO9Q96P70 1041 aaKnown RBP14.9□□□□□ -0.02
CCDC40-203ENST00000374877 ATP10AO60312 1499 aa14.9□□□□□ -0.02
CCDC40-203ENST00000374877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.89□□□□□ -0.03
CCDC40-203ENST00000374877 TET3O43151 1660 aa14.89□□□□□ -0.03
CCDC40-203ENST00000374877 TMC1Q8TDI8 760 aa14.89□□□□□ -0.03
CCDC40-203ENST00000374877 ZBTB47Q9UFB7 747 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-203ENST00000374877 RTL5Q5HYW3 569 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-203ENST00000374877 COL17A1Q9UMD9 1497 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-203ENST00000374877 USP47Q96K76 1375 aa14.88□□□□□ -0.03
CCDC40-203ENST00000374877 AGLP35573 1532 aa14.87□□□□□ -0.03
CCDC40-203ENST00000374877 RNF123Q5XPI4 1314 aa14.87□□□□□ -0.03
CCDC40-203ENST00000374877 ARHGEF40Q8TER5 1519 aa14.87□□□□□ -0.03
CCDC40-203ENST00000374877 POLR1AO95602 1720 aaPredicted RBP14.85□□□□□ -0.03
CCDC40-203ENST00000374877 NPM2Q86SE8 214 aaKnown RBP14.84□□□□□ -0.03
CCDC40-203ENST00000374877 PNISRQ8TF01 805 aaKnown RBP14.84□□□□□ -0.03
CCDC40-203ENST00000374877 PLA2R1Q13018 1463 aa14.84□□□□□ -0.03
CCDC40-203ENST00000374877 EFCAB6Q5THR3 1501 aa14.84□□□□□ -0.03
CCDC40-203ENST00000374877 PTPRTO14522 1441 aa14.84□□□□□ -0.03
CCDC40-203ENST00000374877 E9PCH4 1651 aa14.83□□□□□ -0.04
CCDC40-203ENST00000374877 ZC3H13Q5T200 1668 aaKnown RBP14.82□□□□□ -0.04
CCDC40-203ENST00000374877 SALL2Q9Y467 1007 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-203ENST00000374877 ABCC3O15438 1527 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms