RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CAMK2BQ13554 666 aa6.05□□□□□ -1.44
MCF2-202ENST00000370573 ANKRD13DQ6ZTN6 518 aa6.05□□□□□ -1.44
MCF2-202ENST00000370573 ZNF454Q8N9F8 522 aa6.05□□□□□ -1.44
MCF2-202ENST00000370573 E2F4Q16254 413 aa6.05□□□□□ -1.44
MCF2-202ENST00000370573 PSEN2P49810 448 aa6.03□□□□□ -1.44
MCF2-202ENST00000370573 SPNS2Q8IVW8 549 aa6.03□□□□□ -1.44
MCF2-202ENST00000370573 PPP4R3BQ5MIZ7 849 aa6.02□□□□□ -1.45
MCF2-202ENST00000370573 ANO8Q9HCE9 1232 aaPredicted RBP6.02□□□□□ -1.45
MCF2-202ENST00000370573 PSDA5PKW4 1024 aaPredicted RBP6.01□□□□□ -1.45
MCF2-202ENST00000370573 DDX12PQ92771 950 aa6.01□□□□□ -1.45
MCF2-202ENST00000370573 KCNK17Q96T54 332 aa6.01□□□□□ -1.45
MCF2-202ENST00000370573 CADPSQ9ULU8 1353 aa6.01□□□□□ -1.45
MCF2-202ENST00000370573 CFTRP13569 1480 aa6□□□□□ -1.45
MCF2-202ENST00000370573 FOSBP53539 338 aa6□□□□□ -1.45
MCF2-202ENST00000370573 ARHGAP33O14559 1287 aa6□□□□□ -1.45
MCF2-202ENST00000370573 LSM11P83369 360 aaKnown RBP eCLIP6□□□□□ -1.45
MCF2-202ENST00000370573 DMRTA1Q5VZB9 504 aa6□□□□□ -1.45
MCF2-202ENST00000370573 PCDHGA10Q9Y5H3 936 aa6□□□□□ -1.45
MCF2-202ENST00000370573 NESP48681 1621 aa5.99□□□□□ -1.45
MCF2-202ENST00000370573 MMRN1Q13201 1228 aa5.99□□□□□ -1.45
MCF2-202ENST00000370573 ADAM33Q9BZ11 813 aa5.99□□□□□ -1.45
MCF2-202ENST00000370573 GTF3C3Q9Y5Q9 886 aa5.99□□□□□ -1.45
MCF2-202ENST00000370573 ZDHHC16Q969W1 377 aa5.98□□□□□ -1.45
MCF2-202ENST00000370573 JPH4Q96JJ6 628 aa5.98□□□□□ -1.45
MCF2-202ENST00000370573 KCNV2Q8TDN2 545 aa5.98□□□□□ -1.45
MCF2-202ENST00000370573 GRXCR2A6NFK2 248 aa5.97□□□□□ -1.45
MCF2-202ENST00000370573 PBX2P40425 430 aa5.97□□□□□ -1.45
MCF2-202ENST00000370573 RBM33Q96EV2 1170 aaKnown RBP5.97□□□□□ -1.45
MCF2-202ENST00000370573 PDIA6Q15084 440 aa5.97□□□□□ -1.45
MCF2-202ENST00000370573 BCL2L12Q9HB09 334 aa5.96□□□□□ -1.46
MCF2-202ENST00000370573 DAXXQ9UER7 740 aaPredicted RBP5.96□□□□□ -1.46
MCF2-202ENST00000370573 ABCC8Q09428 1581 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 PTPREP23469 700 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 LAMC3Q9Y6N6 1575 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 PHF14O94880 888 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 NBR1Q14596 966 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 ADGRD1Q6QNK2 874 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 KCNH8Q96L42 1107 aa5.95□□□□□ -1.46
MCF2-202ENST00000370573 TYW1BQ6NUM6 668 aa5.94□□□□□ -1.46
MCF2-202ENST00000370573 PRDM2Q13029 1718 aa5.93□□□□□ -1.46
MCF2-202ENST00000370573 FANCD2Q9BXW9 1451 aa5.93□□□□□ -1.46
MCF2-202ENST00000370573 SPDYE16A6NNV3 312 aaPredicted RBP5.93□□□□□ -1.46
MCF2-202ENST00000370573 COL9A1P20849 921 aa5.93□□□□□ -1.46
MCF2-202ENST00000370573 ARXQ96QS3 562 aa5.93□□□□□ -1.46
MCF2-202ENST00000370573 MYT1LQ9UL68 1186 aa5.93□□□□□ -1.46
MCF2-202ENST00000370573 PTGER2P43116 358 aa5.92□□□□□ -1.46
MCF2-202ENST00000370573 TSR1Q2NL82 804 aaKnown RBP5.92□□□□□ -1.46
MCF2-202ENST00000370573 FBXW7Q969H0 707 aa5.92□□□□□ -1.46
MCF2-202ENST00000370573 ARIH1Q9Y4X5 557 aaPredicted RBP5.92□□□□□ -1.46
MCF2-202ENST00000370573 WRNQ14191 1432 aaPredicted RBP eCLIP5.92□□□□□ -1.46
MCF2-202ENST00000370573 MAP3K7O43318 606 aa5.92□□□□□ -1.46
MCF2-202ENST00000370573 PRIM1P49642 420 aaKnown RBP5.92□□□□□ -1.46
MCF2-202ENST00000370573 C6orf132Q5T0Z8 1188 aa5.92□□□□□ -1.46
MCF2-202ENST00000370573 ARHGEF1Q92888 912 aaKnown RBP5.92□□□□□ -1.46
MCF2-202ENST00000370573 PDS5BQ9NTI5 1447 aa5.91□□□□□ -1.46
MCF2-202ENST00000370573 MLLT3P42568 568 aaPredicted RBP5.91□□□□□ -1.46
MCF2-202ENST00000370573 VPS9D1Q9Y2B5 631 aa5.91□□□□□ -1.46
MCF2-202ENST00000370573 PROX2Q3B8N5 592 aa5.91□□□□□ -1.46
MCF2-202ENST00000370573 EPAS1Q99814 870 aa5.91□□□□□ -1.46
MCF2-202ENST00000370573 SYNJ1O43426 1573 aa5.9□□□□□ -1.46
MCF2-202ENST00000370573 RNF166Q96A37 237 aaPredicted RBP5.9□□□□□ -1.46
MCF2-202ENST00000370573 CUX1P39880 1505 aa5.9□□□□□ -1.47
MCF2-202ENST00000370573 SEMA3EO15041 775 aa5.9□□□□□ -1.47
MCF2-202ENST00000370573 ZBED2Q9BTP6 218 aa5.9□□□□□ -1.47
MCF2-202ENST00000370573 KIF21AQ7Z4S6 1674 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 CEP164Q9UPV0 1460 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 TK2O00142 265 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 HRO43593 1189 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 OSBPP22059 807 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 EN1Q05925 392 aaPredicted RBP5.89□□□□□ -1.47
MCF2-202ENST00000370573 P3H3Q8IVL6 736 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 STAC3Q96MF2 364 aa5.89□□□□□ -1.47
MCF2-202ENST00000370573 PPP1R3GB7ZBB8 358 aa5.88□□□□□ -1.47
MCF2-202ENST00000370573 TMEM132AQ24JP5 1023 aa5.88□□□□□ -1.47
MCF2-202ENST00000370573 URB2Q14146 1524 aaKnown RBP5.87□□□□□ -1.47
MCF2-202ENST00000370573 TOP2BQ02880 1626 aa5.87□□□□□ -1.47
MCF2-202ENST00000370573 CDHR5Q9HBB8 845 aa5.87□□□□□ -1.47
MCF2-202ENST00000370573 BIVM-ERCC5R4GMW8 1640 aa5.87□□□□□ -1.47
MCF2-202ENST00000370573 TOPBP1Q92547 1522 aa5.86□□□□□ -1.47
MCF2-202ENST00000370573 KCTD12Q96CX2 325 aaKnown RBP5.86□□□□□ -1.47
MCF2-202ENST00000370573 KIAA1468Q9P260 1216 aa5.85□□□□□ -1.47
MCF2-202ENST00000370573 DNMBPQ6XZF7 1577 aa5.85□□□□□ -1.47
MCF2-202ENST00000370573 ERCC6Q03468 1493 aa5.85□□□□□ -1.47
MCF2-202ENST00000370573 BHMG1C9JSJ3 638 aaPredicted RBP5.85□□□□□ -1.47
MCF2-202ENST00000370573 MRC2Q9UBG0 1479 aa5.85□□□□□ -1.47
MCF2-202ENST00000370573 MRPL50Q8N5N7 158 aaKnown RBP5.84□□□□□ -1.47
MCF2-202ENST00000370573 SLC4A5Q9BY07 1137 aa5.84□□□□□ -1.47
MCF2-202ENST00000370573 SEPT9Q9UHD8 586 aaPredicted RBP5.84□□□□□ -1.47
MCF2-202ENST00000370573 SOGA1O94964 1423 aa5.84□□□□□ -1.47
MCF2-202ENST00000370573 FGD5Q6ZNL6 1462 aa5.84□□□□□ -1.47
MCF2-202ENST00000370573 RUSC2Q8N2Y8 1516 aa5.83□□□□□ -1.48
MCF2-202ENST00000370573 FAM9AQ8IZU1 332 aaPredicted RBP5.83□□□□□ -1.48
MCF2-202ENST00000370573 GOLGA8CPA6NN73 597 aa5.83□□□□□ -1.48
MCF2-202ENST00000370573 RABGEF1Q9UJ41 708 aa5.83□□□□□ -1.48
MCF2-202ENST00000370573 TSKSQ9UJT2 592 aa5.83□□□□□ -1.48
MCF2-202ENST00000370573 TRIM6-TRIM34B2RNG4 842 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 SMAPO00193 183 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 PTPN5P54829 565 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 CDCA7LQ96GN5 454 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 NBPF3Q9H094 633 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms