RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 FRAT2O75474 233 aaPredicted RBP22.85■■□□□ 1.25
SHANK1-202ENST00000359082 KIF16BQ96L93 1317 aa22.84■■□□□ 1.25
SHANK1-202ENST00000359082 IPO9Q96P70 1041 aaKnown RBP22.84■■□□□ 1.25
SHANK1-202ENST00000359082 KANK4Q5T7N3 995 aaPredicted RBP22.83■■□□□ 1.24
SHANK1-202ENST00000359082 PES1O00541 588 aaKnown RBP22.82■■□□□ 1.24
SHANK1-202ENST00000359082 AMPHP49418 695 aa22.82■■□□□ 1.24
SHANK1-202ENST00000359082 TERF2IPQ9NYB0 399 aa22.82■■□□□ 1.24
SHANK1-202ENST00000359082 NGDNQ8NEJ9 315 aaKnown RBP22.82■■□□□ 1.24
SHANK1-202ENST00000359082 TPM3P06753 285 aa22.81■■□□□ 1.24
SHANK1-202ENST00000359082 SF3A1Q15459 793 aaKnown RBP22.81■■□□□ 1.24
SHANK1-202ENST00000359082 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
SHANK1-202ENST00000359082 ST18O60284 1047 aa22.81■■□□□ 1.24
SHANK1-202ENST00000359082 CEP89Q96ST8 783 aa22.81■■□□□ 1.24
SHANK1-202ENST00000359082 CHMP4AQ9BY43 222 aa22.8■■□□□ 1.24
SHANK1-202ENST00000359082 RAB3GAP2Q9H2M9 1393 aa22.8■■□□□ 1.24
SHANK1-202ENST00000359082 NUTM2FA1L443 756 aa22.8■■□□□ 1.24
SHANK1-202ENST00000359082 PHF14O94880 888 aa22.8■■□□□ 1.24
SHANK1-202ENST00000359082 HDAC5Q9UQL6 1122 aa22.79■■□□□ 1.24
SHANK1-202ENST00000359082 RRP7AQ9Y3A4 280 aaKnown RBP22.79■■□□□ 1.24
SHANK1-202ENST00000359082 H3BQV1 296 aa22.78■■□□□ 1.24
SHANK1-202ENST00000359082 IFFO2Q5TF58 517 aa22.78■■□□□ 1.24
SHANK1-202ENST00000359082 RILPL2Q969X0 211 aa22.78■■□□□ 1.24
SHANK1-202ENST00000359082 TPD52L1Q16890 204 aaPredicted RBP22.78■■□□□ 1.24
SHANK1-202ENST00000359082 ANKRD30AQ9BXX3 1397 aa22.77■■□□□ 1.24
SHANK1-202ENST00000359082 GTF2E1P29083 439 aaPredicted RBP22.76■■□□□ 1.23
SHANK1-202ENST00000359082 LMOD3Q0VAK6 560 aa22.76■■□□□ 1.23
SHANK1-202ENST00000359082 FOXD4L6Q3SYB3 417 aaPredicted RBP22.76■■□□□ 1.23
SHANK1-202ENST00000359082 FOXD4L3Q6VB84 417 aaPredicted RBP22.76■■□□□ 1.23
SHANK1-202ENST00000359082 KIF3BO15066 747 aa22.75■■□□□ 1.23
SHANK1-202ENST00000359082 MROH2BQ7Z745 1585 aa22.73■■□□□ 1.23
SHANK1-202ENST00000359082 HNRNPMP52272 730 aaKnown RBP eCLIP22.73■■□□□ 1.23
SHANK1-202ENST00000359082 FMN1Q68DA7 1419 aa22.73■■□□□ 1.23
SHANK1-202ENST00000359082 TSHZ2Q9NRE2 1034 aa22.73■■□□□ 1.23
SHANK1-202ENST00000359082 EID1Q9Y6B2 187 aa22.73■■□□□ 1.23
SHANK1-202ENST00000359082 VPS8Q8N3P4 1428 aa22.71■■□□□ 1.23
SHANK1-202ENST00000359082 EFCAB2Q5VUJ9 269 aa22.71■■□□□ 1.23
SHANK1-202ENST00000359082 FAM184AQ8NB25 1140 aa22.71■■□□□ 1.23
SHANK1-202ENST00000359082 CCAR2Q8N163 923 aaKnown RBP22.7■■□□□ 1.22
SHANK1-202ENST00000359082 DDX11L8A8MPP1 907 aa22.69■■□□□ 1.22
SHANK1-202ENST00000359082 KIF3AQ9Y496 699 aa22.69■■□□□ 1.22
SHANK1-202ENST00000359082 ANKRD45Q5TZF3 282 aa22.69■■□□□ 1.22
SHANK1-202ENST00000359082 WWC1Q8IX03 1113 aa22.69■■□□□ 1.22
SHANK1-202ENST00000359082 ELL2O00472 640 aaPredicted RBP22.68■■□□□ 1.22
SHANK1-202ENST00000359082 SLC4A3P48751 1232 aa22.68■■□□□ 1.22
SHANK1-202ENST00000359082 BCL2L13Q9BXK5 485 aa22.68■■□□□ 1.22
SHANK1-202ENST00000359082 TRAK1Q9UPV9 953 aa22.68■■□□□ 1.22
SHANK1-202ENST00000359082 USP35Q9P2H5 1018 aa22.67■■□□□ 1.22
SHANK1-202ENST00000359082 TSR1Q2NL82 804 aaKnown RBP22.66■■□□□ 1.22
SHANK1-202ENST00000359082 ABCC8Q09428 1581 aa22.66■■□□□ 1.22
SHANK1-202ENST00000359082 RAD21O60216 631 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 AKAP17AQ02040 695 aaKnown RBP22.65■■□□□ 1.22
SHANK1-202ENST00000359082 WASHC2CQ9Y4E1 1318 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 GOLGA6L19H0YKK7 550 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 MCTP1Q6DN14 999 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 L3MBTL2Q969R5 705 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 NLRP13Q86W25 1043 aa22.65■■□□□ 1.22
SHANK1-202ENST00000359082 PLIN1O60240 522 aa22.64■■□□□ 1.22
SHANK1-202ENST00000359082 TDRD9Q8NDG6 1382 aaKnown RBP22.64■■□□□ 1.22
SHANK1-202ENST00000359082 TPM2P07951 284 aa22.64■■□□□ 1.21
SHANK1-202ENST00000359082 NGEFQ8N5V2 710 aa22.64■■□□□ 1.21
SHANK1-202ENST00000359082 TOP2AP11388 1531 aaKnown RBP22.64■■□□□ 1.21
SHANK1-202ENST00000359082 KIF15Q9NS87 1388 aa22.62■■□□□ 1.21
SHANK1-202ENST00000359082 C1orf141Q5JVX7 400 aa22.62■■□□□ 1.21
SHANK1-202ENST00000359082 DDX49Q9Y6V7 483 aaKnown RBP22.62■■□□□ 1.21
SHANK1-202ENST00000359082 PDE3BQ13370 1112 aa22.62■■□□□ 1.21
SHANK1-202ENST00000359082 PATL2C9JE40 543 aaKnown RBP22.61■■□□□ 1.21
SHANK1-202ENST00000359082 SETQ01105 290 aaPredicted RBP22.61■■□□□ 1.21
SHANK1-202ENST00000359082 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.61■■□□□ 1.21
SHANK1-202ENST00000359082 FBXO3Q9UK99 471 aa22.6■■□□□ 1.21
SHANK1-202ENST00000359082 BECN2A8MW95 431 aa22.6■■□□□ 1.21
SHANK1-202ENST00000359082 ZNF592Q92610 1267 aa22.6■■□□□ 1.21
SHANK1-202ENST00000359082 PANK3Q9H999 370 aa22.59■■□□□ 1.21
SHANK1-202ENST00000359082 MYBBP1AQ9BQG0 1328 aaKnown RBP22.59■■□□□ 1.21
SHANK1-202ENST00000359082 PCMTD1Q96MG8 357 aaPredicted RBP22.59■■□□□ 1.21
SHANK1-202ENST00000359082 SYNE3Q6ZMZ3 975 aa22.59■■□□□ 1.21
SHANK1-202ENST00000359082 MSH5O43196 834 aa22.58■■□□□ 1.21
SHANK1-202ENST00000359082 CENPQQ7L2Z9 268 aaPredicted RBP22.58■■□□□ 1.21
SHANK1-202ENST00000359082 PHLDB1Q86UU1 1377 aa22.58■■□□□ 1.21
SHANK1-202ENST00000359082 HSP90AA2PQ14568 343 aaPredicted RBP22.58■■□□□ 1.2
SHANK1-202ENST00000359082 TPM1P09493 284 aa22.57■■□□□ 1.2
SHANK1-202ENST00000359082 TCEAL9Q9UHQ7 104 aa22.57■■□□□ 1.2
SHANK1-202ENST00000359082 FAM161AQ3B820 660 aa22.57■■□□□ 1.2
SHANK1-202ENST00000359082 DIAPH3Q9NSV4 1193 aa22.57■■□□□ 1.2
SHANK1-202ENST00000359082 EVA1CP58658 441 aa22.56■■□□□ 1.2
SHANK1-202ENST00000359082 CADPSQ9ULU8 1353 aa22.56■■□□□ 1.2
SHANK1-202ENST00000359082 EIF2S2P20042 333 aaKnown RBP22.56■■□□□ 1.2
SHANK1-202ENST00000359082 CRBNQ96SW2 442 aa22.56■■□□□ 1.2
SHANK1-202ENST00000359082 ANO2Q9NQ90 1003 aa22.56■■□□□ 1.2
SHANK1-202ENST00000359082 TRIM34Q9BYJ4 488 aa22.56■■□□□ 1.2
SHANK1-202ENST00000359082 NECTIN2Q92692 538 aa22.55■■□□□ 1.2
SHANK1-202ENST00000359082 COG3Q96JB2 828 aa22.55■■□□□ 1.2
SHANK1-202ENST00000359082 ATP6V1DQ9Y5K8 247 aa22.54■■□□□ 1.2
SHANK1-202ENST00000359082 ZKSCAN2Q63HK3 967 aa22.54■■□□□ 1.2
SHANK1-202ENST00000359082 RSPH6AQ9H0K4 717 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 PDE4AP27815 886 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 EXOC6Q8TAG9 804 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 TRIM29Q14134 588 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 RSPH4AQ5TD94 716 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 CCDC70Q6NSX1 233 aa22.53■■□□□ 1.2
SHANK1-202ENST00000359082 NOL10Q9BSC4 688 aaKnown RBP22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms