RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 PLB1Q6P1J6 1458 aa13.38□□□□□ -0.27
PTPRA-203ENST00000356147 KIF14Q15058 1648 aa13.38□□□□□ -0.27
PTPRA-203ENST00000356147 GPATCH8Q9UKJ3 1502 aaKnown RBP13.38□□□□□ -0.27
PTPRA-203ENST00000356147 ZNF608Q9ULD9 1512 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-203ENST00000356147 PANK3Q9H999 370 aa13.37□□□□□ -0.27
PTPRA-203ENST00000356147 RALGAPBQ86X10 1494 aa13.37□□□□□ -0.27
PTPRA-203ENST00000356147 DISP1Q96F81 1524 aa13.37□□□□□ -0.27
PTPRA-203ENST00000356147 KIAA0586Q9BVV6 1533 aa13.37□□□□□ -0.27
PTPRA-203ENST00000356147 RGS3P49796 1198 aa13.37□□□□□ -0.27
PTPRA-203ENST00000356147 PER1O15534 1290 aaPredicted RBP13.35□□□□□ -0.27
PTPRA-203ENST00000356147 TSPY4P0CV99 314 aa13.35□□□□□ -0.27
PTPRA-203ENST00000356147 TSPY10P0CW01 314 aa13.35□□□□□ -0.27
PTPRA-203ENST00000356147 TROQ12816 1431 aaPredicted RBP13.35□□□□□ -0.27
PTPRA-203ENST00000356147 MS4A1P11836 297 aa13.35□□□□□ -0.27
PTPRA-203ENST00000356147 NFKBIBQ15653 356 aa13.35□□□□□ -0.27
PTPRA-203ENST00000356147 PBRM1Q86U86 1689 aa13.35□□□□□ -0.27
PTPRA-203ENST00000356147 PPM1GO15355 546 aaPredicted RBP13.34□□□□□ -0.27
PTPRA-203ENST00000356147 ADAMTS8Q9UP79 889 aa13.34□□□□□ -0.27
PTPRA-203ENST00000356147 ADAMTS12P58397 1594 aa13.34□□□□□ -0.27
PTPRA-203ENST00000356147 DAXXQ9UER7 740 aaPredicted RBP13.34□□□□□ -0.27
PTPRA-203ENST00000356147 PDE3BQ13370 1112 aa13.33□□□□□ -0.28
PTPRA-203ENST00000356147 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
PTPRA-203ENST00000356147 DISP3Q9P2K9 1392 aa13.32□□□□□ -0.28
PTPRA-203ENST00000356147 UHRF1BP1Q6BDS2 1440 aa13.32□□□□□ -0.28
PTPRA-203ENST00000356147 FRAT1Q92837 279 aaPredicted RBP13.32□□□□□ -0.28
PTPRA-203ENST00000356147 KIAA0556O60303 1618 aa13.32□□□□□ -0.28
PTPRA-203ENST00000356147 RAPGEF6Q8TEU7 1601 aa13.31□□□□□ -0.28
PTPRA-203ENST00000356147 PLEKHD1A6NEE1 506 aa13.31□□□□□ -0.28
PTPRA-203ENST00000356147 USP35Q9P2H5 1018 aa13.31□□□□□ -0.28
PTPRA-203ENST00000356147 C9orf84Q5VXU9 1444 aa13.31□□□□□ -0.28
PTPRA-203ENST00000356147 GSE1Q14687 1217 aa13.3□□□□□ -0.28
PTPRA-203ENST00000356147 CHMP7Q8WUX9 453 aaPredicted RBP13.3□□□□□ -0.28
PTPRA-203ENST00000356147 CCDC146Q8IYE0 955 aa13.3□□□□□ -0.28
PTPRA-203ENST00000356147 FRAT2O75474 233 aaPredicted RBP13.28□□□□□ -0.28
PTPRA-203ENST00000356147 DDRGK1Q96HY6 314 aa13.28□□□□□ -0.28
PTPRA-203ENST00000356147 WASHC2CQ9Y4E1 1318 aa13.28□□□□□ -0.28
PTPRA-203ENST00000356147 TESK2Q96S53 571 aa13.27□□□□□ -0.28
PTPRA-203ENST00000356147 EIF5BO60841 1220 aaKnown RBP13.27□□□□□ -0.29
PTPRA-203ENST00000356147 ADGRL2O95490 1459 aa13.26□□□□□ -0.29
PTPRA-203ENST00000356147 PLEKHH1Q9ULM0 1364 aa13.26□□□□□ -0.29
PTPRA-203ENST00000356147 C8orf34Q49A92 452 aa13.26□□□□□ -0.29
PTPRA-203ENST00000356147 ADGBQ8N7X0 1667 aa13.25□□□□□ -0.29
PTPRA-203ENST00000356147 WDR43Q15061 677 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTPRA-203ENST00000356147 KDM2BQ8NHM5 1336 aa13.25□□□□□ -0.29
PTPRA-203ENST00000356147 CCDC144AA2RUR9 1427 aa13.24□□□□□ -0.29
PTPRA-203ENST00000356147 DUSP27Q5VZP5 1158 aa13.24□□□□□ -0.29
PTPRA-203ENST00000356147 JPH4Q96JJ6 628 aa13.24□□□□□ -0.29
PTPRA-203ENST00000356147 SPINK5Q9NQ38 1064 aaPredicted RBP13.24□□□□□ -0.29
PTPRA-203ENST00000356147 PRAG1Q86YV5 1406 aa13.24□□□□□ -0.29
PTPRA-203ENST00000356147 ARXQ96QS3 562 aa13.24□□□□□ -0.29
PTPRA-203ENST00000356147 BCAR3O75815 825 aa13.23□□□□□ -0.29
PTPRA-203ENST00000356147 FAM161AQ3B820 660 aa13.23□□□□□ -0.29
PTPRA-203ENST00000356147 TMF1P82094 1093 aa13.23□□□□□ -0.29
PTPRA-203ENST00000356147 CENPQQ7L2Z9 268 aaPredicted RBP13.22□□□□□ -0.29
PTPRA-203ENST00000356147 ARHGEF12Q9NZN5 1544 aa13.22□□□□□ -0.29
PTPRA-203ENST00000356147 PPP2R1AP30153 589 aa13.22□□□□□ -0.29
PTPRA-203ENST00000356147 KNSTRNQ9Y448 316 aa13.22□□□□□ -0.29
PTPRA-203ENST00000356147 GRIN2AQ12879 1464 aa13.21□□□□□ -0.29
PTPRA-203ENST00000356147 E9PCH4 1651 aa13.21□□□□□ -0.29
PTPRA-203ENST00000356147 ITSN2Q9NZM3 1697 aa13.21□□□□□ -0.29
PTPRA-203ENST00000356147 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.3
PTPRA-203ENST00000356147 GOLGA2Q08379 1002 aa13.21□□□□□ -0.3
PTPRA-203ENST00000356147 ERBINQ96RT1 1412 aa13.2□□□□□ -0.3
PTPRA-203ENST00000356147 APAF1O14727 1248 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 KDM5DQ9BY66 1539 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 CROCC2H7BZ55 1655 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 CEP170Q5SW79 1584 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 SLKQ9H2G2 1235 aaPredicted RBP13.19□□□□□ -0.3
PTPRA-203ENST00000356147 DMRT2Q9Y5R5 561 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 SEC24BO95487 1268 aa13.19□□□□□ -0.3
PTPRA-203ENST00000356147 IGHDP01880 384 aa13.18□□□□□ -0.3
PTPRA-203ENST00000356147 A2MP01023 1474 aa13.18□□□□□ -0.3
PTPRA-203ENST00000356147 COL17A1Q9UMD9 1497 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-203ENST00000356147 FAM135AQ9P2D6 1515 aa13.17□□□□□ -0.3
PTPRA-203ENST00000356147 CDC42BPAQ5VT25 1732 aa13.17□□□□□ -0.3
PTPRA-203ENST00000356147 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
PTPRA-203ENST00000356147 NEUROD2Q15784 382 aa13.17□□□□□ -0.3
PTPRA-203ENST00000356147 PLA2R1Q13018 1463 aa13.17□□□□□ -0.3
PTPRA-203ENST00000356147 ZMYM4Q5VZL5 1548 aa13.16□□□□□ -0.3
PTPRA-203ENST00000356147 ATP10BO94823 1461 aa13.16□□□□□ -0.3
PTPRA-203ENST00000356147 MAGI1Q96QZ7 1491 aaPredicted RBP13.16□□□□□ -0.3
PTPRA-203ENST00000356147 PANK1Q8TE04 598 aa13.15□□□□□ -0.3
PTPRA-203ENST00000356147 POGKQ9P215 609 aa13.15□□□□□ -0.3
PTPRA-203ENST00000356147 MAGI2Q86UL8 1455 aa13.15□□□□□ -0.3
PTPRA-203ENST00000356147 TRPM1Q7Z4N2 1603 aa13.15□□□□□ -0.3
PTPRA-203ENST00000356147 SPRYD3Q8NCJ5 442 aa13.15□□□□□ -0.3
PTPRA-203ENST00000356147 SLFN5Q08AF3 891 aa13.15□□□□□ -0.31
PTPRA-203ENST00000356147 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.15□□□□□ -0.31
PTPRA-203ENST00000356147 COG6Q9Y2V7 657 aa13.15□□□□□ -0.31
PTPRA-203ENST00000356147 AMER1Q5JTC6 1135 aaPredicted RBP13.14□□□□□ -0.31
PTPRA-203ENST00000356147 PTPRGP23470 1445 aa13.14□□□□□ -0.31
PTPRA-203ENST00000356147 ABCC10Q5T3U5 1492 aa13.13□□□□□ -0.31
PTPRA-203ENST00000356147 CANXP27824 592 aaKnown RBP13.13□□□□□ -0.31
PTPRA-203ENST00000356147 CARMIL2Q6F5E8 1435 aa13.13□□□□□ -0.31
PTPRA-203ENST00000356147 TNNT2P45379 298 aaPredicted RBP13.13□□□□□ -0.31
PTPRA-203ENST00000356147 RRP7AQ9Y3A4 280 aaKnown RBP13.13□□□□□ -0.31
PTPRA-203ENST00000356147 BCL2L13Q9BXK5 485 aa13.12□□□□□ -0.31
PTPRA-203ENST00000356147 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
PTPRA-203ENST00000356147 SLC24A1O60721 1099 aa13.12□□□□□ -0.31
PTPRA-203ENST00000356147 TNNQ9UQP3 1299 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms