RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 TRIM44Q96DX7 344 aaPredicted RBP18.91■□□□□ 0.62
NUP50-201ENST00000347635 STAC3Q96MF2 364 aa18.91■□□□□ 0.62
NUP50-201ENST00000347635 MS4A1P11836 297 aa18.91■□□□□ 0.62
NUP50-201ENST00000347635 GOLGA2Q08379 1002 aa18.91■□□□□ 0.62
NUP50-201ENST00000347635 USP35Q9P2H5 1018 aa18.91■□□□□ 0.62
NUP50-201ENST00000347635 MAPK8IP3Q9UPT6 1336 aa18.9■□□□□ 0.62
NUP50-201ENST00000347635 ZNF644Q9H582 1327 aaPredicted RBP18.89■□□□□ 0.61
NUP50-201ENST00000347635 ARHGAP5Q13017 1502 aa18.89■□□□□ 0.61
NUP50-201ENST00000347635 GOLGA6L22H0YM25 854 aa18.89■□□□□ 0.61
NUP50-201ENST00000347635 ZBTB7CA1YPR0 619 aa18.88■□□□□ 0.61
NUP50-201ENST00000347635 MAPKBP1O60336 1514 aa18.88■□□□□ 0.61
NUP50-201ENST00000347635 HDGFL2Q7Z4V5 671 aaPredicted RBP18.88■□□□□ 0.61
NUP50-201ENST00000347635 SUPT6HQ7KZ85 1726 aaKnown RBP18.88■□□□□ 0.61
NUP50-201ENST00000347635 NAIPQ13075 1403 aa18.87■□□□□ 0.61
NUP50-201ENST00000347635 MORC1Q86VD1 984 aa18.87■□□□□ 0.61
NUP50-201ENST00000347635 PANK3Q9H999 370 aa18.86■□□□□ 0.61
NUP50-201ENST00000347635 PLIN1O60240 522 aa18.86■□□□□ 0.61
NUP50-201ENST00000347635 VGFO15240 615 aaPredicted RBP18.85■□□□□ 0.61
NUP50-201ENST00000347635 L1TD1Q5T7N2 865 aaKnown RBP18.84■□□□□ 0.61
NUP50-201ENST00000347635 CENPQQ7L2Z9 268 aaPredicted RBP18.84■□□□□ 0.61
NUP50-201ENST00000347635 CRBNQ96SW2 442 aa18.84■□□□□ 0.61
NUP50-201ENST00000347635 ANKRD50Q9ULJ7 1429 aa18.83■□□□□ 0.61
NUP50-201ENST00000347635 STK26Q9P289 416 aa18.83■□□□□ 0.61
NUP50-201ENST00000347635 NBPF8Q3BBV2 869 aa18.82■□□□□ 0.6
NUP50-201ENST00000347635 CCDC184Q52MB2 194 aa18.82■□□□□ 0.6
NUP50-201ENST00000347635 BRD4O60885 1362 aaPredicted RBP18.81■□□□□ 0.6
NUP50-201ENST00000347635 CCDC146Q8IYE0 955 aa18.81■□□□□ 0.6
NUP50-201ENST00000347635 U2SURPO15042 1029 aaKnown RBP18.8■□□□□ 0.6
NUP50-201ENST00000347635 HSCBQ8IWL3 235 aa18.8■□□□□ 0.6
NUP50-201ENST00000347635 SMG6Q86US8 1419 aaKnown RBP18.8■□□□□ 0.6
NUP50-201ENST00000347635 AKNAQ7Z591 1439 aa18.79■□□□□ 0.6
NUP50-201ENST00000347635 LMOD2Q6P5Q4 547 aa18.79■□□□□ 0.6
NUP50-201ENST00000347635 FAM161AQ3B820 660 aa18.79■□□□□ 0.6
NUP50-201ENST00000347635 EPRSP07814 1512 aaKnown RBP18.78■□□□□ 0.6
NUP50-201ENST00000347635 HSP90AB1P08238 724 aaKnown RBP18.78■□□□□ 0.6
NUP50-201ENST00000347635 CHMP4BQ9H444 224 aaKnown RBP18.78■□□□□ 0.6
NUP50-201ENST00000347635 PMFBP1Q8TBY8 1022 aa18.77■□□□□ 0.6
NUP50-201ENST00000347635 NAP1L5Q96NT1 182 aaPredicted RBP18.77■□□□□ 0.6
NUP50-201ENST00000347635 RWDD1Q9H446 243 aaPredicted RBP18.77■□□□□ 0.6
NUP50-201ENST00000347635 ZNF608Q9ULD9 1512 aaPredicted RBP18.77■□□□□ 0.59
NUP50-201ENST00000347635 SAFB2Q14151 953 aaKnown RBP eCLIP18.76■□□□□ 0.59
NUP50-201ENST00000347635 TERF2IPQ9NYB0 399 aa18.76■□□□□ 0.59
NUP50-201ENST00000347635 SPRYD3Q8NCJ5 442 aa18.76■□□□□ 0.59
NUP50-201ENST00000347635 SLKQ9H2G2 1235 aaPredicted RBP18.76■□□□□ 0.59
NUP50-201ENST00000347635 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
NUP50-201ENST00000347635 NCLP19338 710 aaKnown RBP18.75■□□□□ 0.59
NUP50-201ENST00000347635 CASC1Q6TDU7 716 aa18.75■□□□□ 0.59
NUP50-201ENST00000347635 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.75■□□□□ 0.59
NUP50-201ENST00000347635 PTPN23Q9H3S7 1636 aa18.75■□□□□ 0.59
NUP50-201ENST00000347635 DAPK1P53355 1430 aa18.74■□□□□ 0.59
NUP50-201ENST00000347635 MSH5O43196 834 aa18.73■□□□□ 0.59
NUP50-201ENST00000347635 PLEKHG5O94827 1062 aa18.73■□□□□ 0.59
NUP50-201ENST00000347635 KIAA1107Q9UPP5 1409 aa18.73■□□□□ 0.59
NUP50-201ENST00000347635 GSE1Q14687 1217 aa18.72■□□□□ 0.59
NUP50-201ENST00000347635 SLC4A3P48751 1232 aa18.72■□□□□ 0.59
NUP50-201ENST00000347635 C9orf84Q5VXU9 1444 aa18.71■□□□□ 0.59
NUP50-201ENST00000347635 AFAP1Q8N556 730 aa18.7■□□□□ 0.58
NUP50-201ENST00000347635 PNISRQ8TF01 805 aaKnown RBP18.69■□□□□ 0.58
NUP50-201ENST00000347635 E9PSI1 815 aa18.68■□□□□ 0.58
NUP50-201ENST00000347635 U2AF1L5P0DN76 240 aaPredicted RBP18.68■□□□□ 0.58
NUP50-201ENST00000347635 U2AF1Q01081 240 aaKnown RBP eCLIP18.68■□□□□ 0.58
NUP50-201ENST00000347635 ROCK1Q13464 1354 aa18.68■□□□□ 0.58
NUP50-201ENST00000347635 PAK3O75914 559 aaPredicted RBP18.68■□□□□ 0.58
NUP50-201ENST00000347635 C11orf95C9JLR9 678 aaPredicted RBP18.66■□□□□ 0.58
NUP50-201ENST00000347635 ITPRIPQ8IWB1 547 aa18.66■□□□□ 0.58
NUP50-201ENST00000347635 A0A0G2JS52 829 aa18.66■□□□□ 0.58
NUP50-201ENST00000347635 IPO8O15397 1037 aaKnown RBP18.66■□□□□ 0.58
NUP50-201ENST00000347635 NCOA1Q15788 1441 aa18.65■□□□□ 0.58
NUP50-201ENST00000347635 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.65■□□□□ 0.58
NUP50-201ENST00000347635 CDK13Q14004 1512 aaKnown RBP18.65■□□□□ 0.58
NUP50-201ENST00000347635 ANKRD30BQ9BXX2 1392 aa18.64■□□□□ 0.57
NUP50-201ENST00000347635 CGNL1Q0VF96 1302 aa18.63■□□□□ 0.57
NUP50-201ENST00000347635 CDCA7LQ96GN5 454 aa18.63■□□□□ 0.57
NUP50-201ENST00000347635 EVC2Q86UK5 1308 aa18.63■□□□□ 0.57
NUP50-201ENST00000347635 CLUAP1Q96AJ1 413 aa18.63■□□□□ 0.57
NUP50-201ENST00000347635 MFAP1P55081 439 aaKnown RBP18.62■□□□□ 0.57
NUP50-201ENST00000347635 GZF1Q9H116 711 aaPredicted RBP18.62■□□□□ 0.57
NUP50-201ENST00000347635 TRAK1Q9UPV9 953 aa18.62■□□□□ 0.57
NUP50-201ENST00000347635 SCAPERQ9BY12 1400 aa18.62■□□□□ 0.57
NUP50-201ENST00000347635 PLB1Q6P1J6 1458 aa18.61■□□□□ 0.57
NUP50-201ENST00000347635 APAF1O14727 1248 aa18.61■□□□□ 0.57
NUP50-201ENST00000347635 GOLGA6L3A6NEY3 463 aa18.61■□□□□ 0.57
NUP50-201ENST00000347635 SMC4Q9NTJ3 1288 aa18.61■□□□□ 0.57
NUP50-201ENST00000347635 CALD1Q05682 793 aaKnown RBP18.61■□□□□ 0.57
NUP50-201ENST00000347635 KIF14Q15058 1648 aa18.61■□□□□ 0.57
NUP50-201ENST00000347635 NUTM2DQ5VT03 806 aaPredicted RBP18.6■□□□□ 0.57
NUP50-201ENST00000347635 CFAP43Q8NDM7 1665 aa18.6■□□□□ 0.57
NUP50-201ENST00000347635 GBP4Q96PP9 640 aa18.6■□□□□ 0.57
NUP50-201ENST00000347635 WDR62O43379 1518 aa18.6■□□□□ 0.57
NUP50-201ENST00000347635 PTMAP06454 111 aaKnown RBP18.58■□□□□ 0.57
NUP50-201ENST00000347635 PTMSP20962 102 aa18.58■□□□□ 0.57
NUP50-201ENST00000347635 RRP7AQ9Y3A4 280 aaKnown RBP18.58■□□□□ 0.57
NUP50-201ENST00000347635 NGEFQ8N5V2 710 aa18.58■□□□□ 0.56
NUP50-201ENST00000347635 NGDNQ8NEJ9 315 aaKnown RBP18.58■□□□□ 0.56
NUP50-201ENST00000347635 ADAMTS8Q9UP79 889 aa18.58■□□□□ 0.56
NUP50-201ENST00000347635 COG6Q9Y2V7 657 aa18.58■□□□□ 0.56
NUP50-201ENST00000347635 THOC2Q8NI27 1593 aaKnown RBP18.57■□□□□ 0.56
NUP50-201ENST00000347635 PTPRKQ15262 1439 aa18.57■□□□□ 0.56
NUP50-201ENST00000347635 CCDC141Q6ZP82 1450 aa18.57■□□□□ 0.56
NUP50-201ENST00000347635 CFAP44Q96MT7 982 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms