RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 FOXD4L4Q8WXT5 416 aaPredicted RBP21.66■■□□□ 1.06
SPAST-202ENST00000345662 TRIM6-TRIM34B2RNG4 842 aa21.65■■□□□ 1.06
SPAST-202ENST00000345662 GOLGA6L1Q8N7Z2 621 aa21.65■■□□□ 1.06
SPAST-202ENST00000345662 HDGFL2Q7Z4V5 671 aaPredicted RBP21.65■■□□□ 1.06
SPAST-202ENST00000345662 COG6Q9Y2V7 657 aa21.65■■□□□ 1.06
SPAST-202ENST00000345662 MRE11P49959 708 aa21.64■■□□□ 1.05
SPAST-202ENST00000345662 SAFB2Q14151 953 aaKnown RBP eCLIP21.64■■□□□ 1.05
SPAST-202ENST00000345662 PAK3O75914 559 aaPredicted RBP21.64■■□□□ 1.05
SPAST-202ENST00000345662 PANK3Q9H999 370 aa21.63■■□□□ 1.05
SPAST-202ENST00000345662 ZNF771Q7L3S4 317 aaPredicted RBP21.63■■□□□ 1.05
SPAST-202ENST00000345662 USP47Q96K76 1375 aa21.62■■□□□ 1.05
SPAST-202ENST00000345662 ZKSCAN2Q63HK3 967 aa21.61■■□□□ 1.05
SPAST-202ENST00000345662 PKNOX2Q96KN3 472 aa21.6■■□□□ 1.05
SPAST-202ENST00000345662 KIF16BQ96L93 1317 aa21.6■■□□□ 1.05
SPAST-202ENST00000345662 CCDC18Q5T9S5 1454 aa21.6■■□□□ 1.05
SPAST-202ENST00000345662 MAP7D2Q96T17 732 aa21.59■■□□□ 1.05
SPAST-202ENST00000345662 CNTLNQ9NXG0 1405 aa21.59■■□□□ 1.05
SPAST-202ENST00000345662 PRKCSHP14314 528 aaPredicted RBP21.59■■□□□ 1.05
SPAST-202ENST00000345662 BCL2L13Q9BXK5 485 aa21.59■■□□□ 1.05
SPAST-202ENST00000345662 ANKRD45Q5TZF3 282 aa21.58■■□□□ 1.05
SPAST-202ENST00000345662 CCDC7Q96M83 1385 aa21.58■■□□□ 1.04
SPAST-202ENST00000345662 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.04
SPAST-202ENST00000345662 ATP6V1DQ9Y5K8 247 aa21.58■■□□□ 1.04
SPAST-202ENST00000345662 RRP7AQ9Y3A4 280 aaKnown RBP21.56■■□□□ 1.04
SPAST-202ENST00000345662 MTERF4Q7Z6M4 381 aaKnown RBP21.56■■□□□ 1.04
SPAST-202ENST00000345662 FHOD3Q2V2M9 1422 aa21.56■■□□□ 1.04
SPAST-202ENST00000345662 TULP1O00294 542 aaPredicted RBP21.56■■□□□ 1.04
SPAST-202ENST00000345662 STK31Q9BXU1 1019 aa21.55■■□□□ 1.04
SPAST-202ENST00000345662 RUSC2Q8N2Y8 1516 aa21.54■■□□□ 1.04
SPAST-202ENST00000345662 TPM2P07951 284 aa21.54■■□□□ 1.04
SPAST-202ENST00000345662 SOX12O15370 315 aa21.54■■□□□ 1.04
SPAST-202ENST00000345662 FRAT2O75474 233 aaPredicted RBP21.53■■□□□ 1.04
SPAST-202ENST00000345662 WIZO95785 1651 aa21.53■■□□□ 1.04
SPAST-202ENST00000345662 NGEFQ8N5V2 710 aa21.53■■□□□ 1.04
SPAST-202ENST00000345662 GPATCH3Q96I76 525 aa21.53■■□□□ 1.04
SPAST-202ENST00000345662 APAF1O14727 1248 aa21.52■■□□□ 1.04
SPAST-202ENST00000345662 HSP90B1P14625 803 aaKnown RBP21.51■■□□□ 1.03
SPAST-202ENST00000345662 C22orf23Q9BZE7 217 aa21.51■■□□□ 1.03
SPAST-202ENST00000345662 KIF7Q2M1P5 1343 aa21.51■■□□□ 1.03
SPAST-202ENST00000345662 STK26Q9P289 416 aa21.51■■□□□ 1.03
SPAST-202ENST00000345662 GOLGA6L19H0YKK7 550 aa21.51■■□□□ 1.03
SPAST-202ENST00000345662 CCDC34Q96HJ3 373 aa21.51■■□□□ 1.03
SPAST-202ENST00000345662 DDX19BQ9UMR2 479 aa21.5■■□□□ 1.03
SPAST-202ENST00000345662 NUCB2P80303 420 aa21.5■■□□□ 1.03
SPAST-202ENST00000345662 R3HCC1Q9Y3T6 440 aaKnown RBP21.5■■□□□ 1.03
SPAST-202ENST00000345662 LMOD3Q0VAK6 560 aa21.5■■□□□ 1.03
SPAST-202ENST00000345662 NASPP49321 788 aaPredicted RBP21.49■■□□□ 1.03
SPAST-202ENST00000345662 FOXD4L6Q3SYB3 417 aaPredicted RBP21.49■■□□□ 1.03
SPAST-202ENST00000345662 FOXD4L3Q6VB84 417 aaPredicted RBP21.49■■□□□ 1.03
SPAST-202ENST00000345662 TRAK2O60296 914 aa21.49■■□□□ 1.03
SPAST-202ENST00000345662 SLC4A10Q6U841 1118 aa21.49■■□□□ 1.03
SPAST-202ENST00000345662 CHMP4AQ9BY43 222 aa21.48■■□□□ 1.03
SPAST-202ENST00000345662 SPAG9O60271 1321 aaKnown RBP21.48■■□□□ 1.03
SPAST-202ENST00000345662 REC8O95072 547 aa21.47■■□□□ 1.03
SPAST-202ENST00000345662 KIF3AQ9Y496 699 aa21.47■■□□□ 1.03
SPAST-202ENST00000345662 BECN2A8MW95 431 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 AAMPQ13685 434 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 BACH2Q9BYV9 841 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 TERF2IPQ9NYB0 399 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 WASHC2AQ641Q2 1341 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 LMOD2Q6P5Q4 547 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 HDAC5Q9UQL6 1122 aa21.46■■□□□ 1.03
SPAST-202ENST00000345662 ZNF592Q92610 1267 aa21.45■■□□□ 1.03
SPAST-202ENST00000345662 NOC3LQ8WTT2 800 aaKnown RBP21.45■■□□□ 1.02
SPAST-202ENST00000345662 SMARCA2P51531 1590 aa21.45■■□□□ 1.02
SPAST-202ENST00000345662 DZIP1LQ8IYY4 767 aaKnown RBP21.45■■□□□ 1.02
SPAST-202ENST00000345662 GPS2Q13227 327 aa21.44■■□□□ 1.02
SPAST-202ENST00000345662 MCTP1Q6DN14 999 aa21.43■■□□□ 1.02
SPAST-202ENST00000345662 CCDC39Q9UFE4 941 aa21.43■■□□□ 1.02
SPAST-202ENST00000345662 MSH5O43196 834 aa21.43■■□□□ 1.02
SPAST-202ENST00000345662 TPM3P06753 285 aa21.43■■□□□ 1.02
SPAST-202ENST00000345662 SF3A1Q15459 793 aaKnown RBP21.43■■□□□ 1.02
SPAST-202ENST00000345662 RILPL2Q969X0 211 aa21.42■■□□□ 1.02
SPAST-202ENST00000345662 CCDC144AA2RUR9 1427 aa21.42■■□□□ 1.02
SPAST-202ENST00000345662 TEX35Q5T0J7 233 aa21.42■■□□□ 1.02
SPAST-202ENST00000345662 SETQ01105 290 aaPredicted RBP21.42■■□□□ 1.02
SPAST-202ENST00000345662 BRD4O60885 1362 aaPredicted RBP21.41■■□□□ 1.02
SPAST-202ENST00000345662 DIAPH3Q9NSV4 1193 aa21.41■■□□□ 1.02
SPAST-202ENST00000345662 UACAQ9BZF9 1416 aa21.4■■□□□ 1.02
SPAST-202ENST00000345662 H3BQV1 296 aa21.39■■□□□ 1.01
SPAST-202ENST00000345662 IFFO2Q5TF58 517 aa21.39■■□□□ 1.01
SPAST-202ENST00000345662 CCAR2Q8N163 923 aaKnown RBP21.38■■□□□ 1.01
SPAST-202ENST00000345662 HDGFP51858 240 aaKnown RBP21.38■■□□□ 1.01
SPAST-202ENST00000345662 CCDC173Q0VFZ6 552 aa21.38■■□□□ 1.01
SPAST-202ENST00000345662 RSPH4AQ5TD94 716 aa21.37■■□□□ 1.01
SPAST-202ENST00000345662 ISY1Q9ULR0 285 aaKnown RBP21.37■■□□□ 1.01
SPAST-202ENST00000345662 A0A0U1RQG5 324 aaPredicted RBP21.37■■□□□ 1.01
SPAST-202ENST00000345662 CARMIL2Q6F5E8 1435 aa21.36■■□□□ 1.01
SPAST-202ENST00000345662 AKNAQ7Z591 1439 aa21.36■■□□□ 1.01
SPAST-202ENST00000345662 GGT6Q6P531 493 aa21.36■■□□□ 1.01
SPAST-202ENST00000345662 RRP9O43818 475 aaKnown RBP21.36■■□□□ 1.01
SPAST-202ENST00000345662 ELL2O00472 640 aaPredicted RBP21.36■■□□□ 1.01
SPAST-202ENST00000345662 HNRNPMP52272 730 aaKnown RBP eCLIP21.35■■□□□ 1.01
SPAST-202ENST00000345662 FAM184AQ8NB25 1140 aa21.34■■□□□ 1.01
SPAST-202ENST00000345662 INTS3Q68E01 1043 aaKnown RBP21.34■■□□□ 1.01
SPAST-202ENST00000345662 PANK1Q8TE04 598 aa21.34■■□□□ 1.01
SPAST-202ENST00000345662 LNPKQ9C0E8 428 aa21.33■■□□□ 1
SPAST-202ENST00000345662 CDCA7LQ96GN5 454 aa21.32■■□□□ 1
SPAST-202ENST00000345662 EFCAB2Q5VUJ9 269 aa21.32■■□□□ 1
SPAST-202ENST00000345662 TDRD9Q8NDG6 1382 aaKnown RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms