RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 UHRF1BP1LA0JNW5 1464 aa26.65■■□□□ 1.86
COL9A3-201ENST00000343916 TSHZ2Q9NRE2 1034 aa26.64■■□□□ 1.86
COL9A3-201ENST00000343916 CCDC144AA2RUR9 1427 aa26.63■■□□□ 1.85
COL9A3-201ENST00000343916 PLCH2O75038 1416 aa26.63■■□□□ 1.85
COL9A3-201ENST00000343916 DHX29Q7Z478 1369 aaKnown RBP26.63■■□□□ 1.85
COL9A3-201ENST00000343916 RGL3Q3MIN7 710 aa26.63■■□□□ 1.85
COL9A3-201ENST00000343916 ST20-MTHFSA0A0A6YYL1 179 aa26.61■■□□□ 1.85
COL9A3-201ENST00000343916 UNC13BO14795 1591 aa26.61■■□□□ 1.85
COL9A3-201ENST00000343916 PLXNC1O60486 1568 aa26.6■■□□□ 1.85
COL9A3-201ENST00000343916 PLA2R1Q13018 1463 aa26.6■■□□□ 1.85
COL9A3-201ENST00000343916 EFCAB2Q5VUJ9 269 aa26.6■■□□□ 1.85
COL9A3-201ENST00000343916 ROCK2O75116 1388 aaKnown RBP26.58■■□□□ 1.85
COL9A3-201ENST00000343916 TRAPPC8Q9Y2L5 1435 aa26.56■■□□□ 1.84
COL9A3-201ENST00000343916 ARID4BQ4LE39 1312 aaPredicted RBP26.56■■□□□ 1.84
COL9A3-201ENST00000343916 DUOX2Q9NRD8 1548 aa26.55■■□□□ 1.84
COL9A3-201ENST00000343916 IQGAP3Q86VI3 1631 aa26.53■■□□□ 1.84
COL9A3-201ENST00000343916 ABCC1P33527 1531 aa26.52■■□□□ 1.84
COL9A3-201ENST00000343916 IRX6P78412 446 aaPredicted RBP26.52■■□□□ 1.84
COL9A3-201ENST00000343916 PRAG1Q86YV5 1406 aa26.52■■□□□ 1.84
COL9A3-201ENST00000343916 NBPF1Q3BBV0 1214 aa26.5■■□□□ 1.83
COL9A3-201ENST00000343916 AFAP1Q8N556 730 aa26.5■■□□□ 1.83
COL9A3-201ENST00000343916 ERBINQ96RT1 1412 aa26.5■■□□□ 1.83
COL9A3-201ENST00000343916 A2MP01023 1474 aa26.49■■□□□ 1.83
COL9A3-201ENST00000343916 TRPM1Q7Z4N2 1603 aa26.46■■□□□ 1.83
COL9A3-201ENST00000343916 ZBED9Q6R2W3 1325 aa26.46■■□□□ 1.83
COL9A3-201ENST00000343916 MAGI2Q86UL8 1455 aa26.46■■□□□ 1.83
COL9A3-201ENST00000343916 SPAG9O60271 1321 aaKnown RBP26.44■■□□□ 1.82
COL9A3-201ENST00000343916 WDR7Q9Y4E6 1490 aa26.39■■□□□ 1.81
COL9A3-201ENST00000343916 ATP10AO60312 1499 aa26.38■■□□□ 1.81
COL9A3-201ENST00000343916 SENP3-EIF4A1A0A087X0R7 540 aa26.38■■□□□ 1.81
COL9A3-201ENST00000343916 ZFYVE16Q7Z3T8 1539 aa26.36■■□□□ 1.81
COL9A3-201ENST00000343916 GPRASP1Q5JY77 1395 aa26.35■■□□□ 1.81
COL9A3-201ENST00000343916 TMC1Q8TDI8 760 aa26.34■■□□□ 1.81
COL9A3-201ENST00000343916 FANCAO15360 1455 aa26.34■■□□□ 1.81
COL9A3-201ENST00000343916 ARAP3Q8WWN8 1544 aa26.33■■□□□ 1.81
COL9A3-201ENST00000343916 RTEL1-TNFRSF6BF6WH68 1400 aa26.33■■□□□ 1.81
COL9A3-201ENST00000343916 PNISRQ8TF01 805 aaKnown RBP26.31■■□□□ 1.8
COL9A3-201ENST00000343916 E9PCH4 1651 aa26.31■■□□□ 1.8
COL9A3-201ENST00000343916 MYT1LQ9UL68 1186 aa26.31■■□□□ 1.8
COL9A3-201ENST00000343916 TESK2Q96S53 571 aa26.29■■□□□ 1.8
COL9A3-201ENST00000343916 PRDM15P57071 1507 aaPredicted RBP26.29■■□□□ 1.8
COL9A3-201ENST00000343916 DISP3Q9P2K9 1392 aa26.28■■□□□ 1.8
COL9A3-201ENST00000343916 ASXL2Q76L83 1435 aa26.28■■□□□ 1.8
COL9A3-201ENST00000343916 ANP32EQ9BTT0 268 aa26.28■■□□□ 1.8
COL9A3-201ENST00000343916 ABCA9Q8IUA7 1624 aa26.27■■□□□ 1.8
COL9A3-201ENST00000343916 SCAPERQ9BY12 1400 aa26.26■■□□□ 1.79
COL9A3-201ENST00000343916 MYBBP1AQ9BQG0 1328 aaKnown RBP26.26■■□□□ 1.79
COL9A3-201ENST00000343916 EIF2AK4Q9P2K8 1649 aaKnown RBP26.26■■□□□ 1.79
COL9A3-201ENST00000343916 ATP7AQ04656 1500 aa26.25■■□□□ 1.79
COL9A3-201ENST00000343916 RALBP1Q15311 655 aa26.25■■□□□ 1.79
COL9A3-201ENST00000343916 ADGRL1O94910 1474 aa26.25■■□□□ 1.79
COL9A3-201ENST00000343916 KIF3BO15066 747 aa26.24■■□□□ 1.79
COL9A3-201ENST00000343916 COL17A1Q9UMD9 1497 aaPredicted RBP26.24■■□□□ 1.79
COL9A3-201ENST00000343916 LAMC1P11047 1609 aa26.24■■□□□ 1.79
COL9A3-201ENST00000343916 PER1O15534 1290 aaPredicted RBP26.22■■□□□ 1.79
COL9A3-201ENST00000343916 INO80Q9ULG1 1556 aaPredicted RBP26.21■■□□□ 1.79
COL9A3-201ENST00000343916 BRD4O60885 1362 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-201ENST00000343916 DEPDC5O75140 1603 aa26.2■■□□□ 1.78
COL9A3-201ENST00000343916 TRPM2O94759 1503 aa26.2■■□□□ 1.78
COL9A3-201ENST00000343916 KTN1Q86UP2 1357 aaKnown RBP26.2■■□□□ 1.78
COL9A3-201ENST00000343916 NPM1P06748 294 aaKnown RBP eCLIP26.2■■□□□ 1.78
COL9A3-201ENST00000343916 SPHKAPQ2M3C7 1700 aa26.18■■□□□ 1.78
COL9A3-201ENST00000343916 SMG6Q86US8 1419 aaKnown RBP26.18■■□□□ 1.78
COL9A3-201ENST00000343916 PTPRTO14522 1441 aa26.17■■□□□ 1.78
COL9A3-201ENST00000343916 TMF1P82094 1093 aa26.17■■□□□ 1.78
COL9A3-201ENST00000343916 CLTCL1P53675 1640 aa26.17■■□□□ 1.78
COL9A3-201ENST00000343916 LRPPRCP42704 1394 aaKnown RBP26.16■■□□□ 1.78
COL9A3-201ENST00000343916 PARD3Q8TEW0 1356 aa26.16■■□□□ 1.78
COL9A3-201ENST00000343916 RNF17Q9BXT8 1623 aaKnown RBP26.16■■□□□ 1.78
COL9A3-201ENST00000343916 CC2D1BQ5T0F9 858 aaKnown RBP26.16■■□□□ 1.78
COL9A3-201ENST00000343916 PANK3Q9H999 370 aa26.16■■□□□ 1.78
COL9A3-201ENST00000343916 KANK1Q14678 1352 aa26.16■■□□□ 1.78
COL9A3-201ENST00000343916 ERICH6BQ5W0A0 696 aa26.15■■□□□ 1.78
COL9A3-201ENST00000343916 PPP4R2Q9NY27 417 aa26.15■■□□□ 1.78
COL9A3-201ENST00000343916 NUDCQ9Y266 331 aa26.15■■□□□ 1.78
COL9A3-201ENST00000343916 MADDQ8WXG6 1647 aa26.15■■□□□ 1.78
COL9A3-201ENST00000343916 TET3O43151 1660 aa26.14■■□□□ 1.78
COL9A3-201ENST00000343916 RBM19Q9Y4C8 960 aaKnown RBP26.13■■□□□ 1.77
COL9A3-201ENST00000343916 CEP152O94986 1710 aa26.13■■□□□ 1.77
COL9A3-201ENST00000343916 NLRP13Q86W25 1043 aa26.13■■□□□ 1.77
COL9A3-201ENST00000343916 VWDEQ8N2E2 1590 aa26.11■■□□□ 1.77
COL9A3-201ENST00000343916 CYB5RLQ6IPT4 315 aa26.1■■□□□ 1.77
COL9A3-201ENST00000343916 B4GALNT3Q6L9W6 998 aa26.1■■□□□ 1.77
COL9A3-201ENST00000343916 MROH1Q8NDA8 1641 aa26.08■■□□□ 1.77
COL9A3-201ENST00000343916 RIMBP3CA6NJZ7 1639 aa26.08■■□□□ 1.77
COL9A3-201ENST00000343916 RIMBP3BA6NNM3 1639 aa26.08■■□□□ 1.77
COL9A3-201ENST00000343916 RIMBP3Q9UFD9 1639 aa26.08■■□□□ 1.77
COL9A3-201ENST00000343916 UGGT1Q9NYU2 1555 aa26.08■■□□□ 1.76
COL9A3-201ENST00000343916 SALL2Q9Y467 1007 aaPredicted RBP26.07■■□□□ 1.76
COL9A3-201ENST00000343916 KIDINS220Q9ULH0 1771 aa26.06■■□□□ 1.76
COL9A3-201ENST00000343916 IQGAP1P46940 1657 aa26.04■■□□□ 1.76
COL9A3-201ENST00000343916 WASHC2CQ9Y4E1 1318 aa26.03■■□□□ 1.76
COL9A3-201ENST00000343916 ZNF518AQ6AHZ1 1483 aa26.01■■□□□ 1.76
COL9A3-201ENST00000343916 SCAF11Q99590 1463 aaKnown RBP26.01■■□□□ 1.76
COL9A3-201ENST00000343916 STAC3Q96MF2 364 aa26■■□□□ 1.75
COL9A3-201ENST00000343916 CD109Q6YHK3 1445 aa25.99■■□□□ 1.75
COL9A3-201ENST00000343916 RNF123Q5XPI4 1314 aa25.99■■□□□ 1.75
COL9A3-201ENST00000343916 CFAP70Q5T0N1 1121 aa25.98■■□□□ 1.75
COL9A3-201ENST00000343916 ADGRF5Q8IZF2 1346 aa25.97■■□□□ 1.75
COL9A3-201ENST00000343916 EFCAB6Q5THR3 1501 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms