RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 A2MP01023 1474 aa21.53■■□□□ 1.04
CXCL12-201ENST00000343575 MAGI2Q86UL8 1455 aa21.53■■□□□ 1.04
CXCL12-201ENST00000343575 SLC4A1APQ9BWU0 796 aaKnown RBP21.52■■□□□ 1.03
CXCL12-201ENST00000343575 FOXD1Q16676 465 aa21.51■■□□□ 1.03
CXCL12-201ENST00000343575 SIN3AQ96ST3 1273 aa21.49■■□□□ 1.03
CXCL12-201ENST00000343575 EIF2AK4Q9P2K8 1649 aaKnown RBP21.49■■□□□ 1.03
CXCL12-201ENST00000343575 DEPDC5O75140 1603 aa21.49■■□□□ 1.03
CXCL12-201ENST00000343575 FAM135AQ9P2D6 1515 aa21.48■■□□□ 1.03
CXCL12-201ENST00000343575 KIF3BO15066 747 aa21.47■■□□□ 1.03
CXCL12-201ENST00000343575 MROH1Q8NDA8 1641 aa21.47■■□□□ 1.03
CXCL12-201ENST00000343575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.47■■□□□ 1.03
CXCL12-201ENST00000343575 IQGAP3Q86VI3 1631 aa21.46■■□□□ 1.03
CXCL12-201ENST00000343575 PKD2Q13563 968 aa21.45■■□□□ 1.02
CXCL12-201ENST00000343575 ANKRD30BQ9BXX2 1392 aa21.44■■□□□ 1.02
CXCL12-201ENST00000343575 BCORL1Q5H9F3 1711 aa21.44■■□□□ 1.02
CXCL12-201ENST00000343575 VWDEQ8N2E2 1590 aa21.43■■□□□ 1.02
CXCL12-201ENST00000343575 ATP10AO60312 1499 aa21.43■■□□□ 1.02
CXCL12-201ENST00000343575 PRDM15P57071 1507 aaPredicted RBP21.42■■□□□ 1.02
CXCL12-201ENST00000343575 RNF17Q9BXT8 1623 aaKnown RBP21.42■■□□□ 1.02
CXCL12-201ENST00000343575 NEUROD1Q13562 356 aa21.39■■□□□ 1.02
CXCL12-201ENST00000343575 SIGLEC1Q9BZZ2 1709 aa21.39■■□□□ 1.01
CXCL12-201ENST00000343575 REREQ9P2R6 1566 aa21.38■■□□□ 1.01
CXCL12-201ENST00000343575 ARHGEF40Q8TER5 1519 aa21.38■■□□□ 1.01
CXCL12-201ENST00000343575 GGT6Q6P531 493 aa21.34■■□□□ 1.01
CXCL12-201ENST00000343575 PLA2R1Q13018 1463 aa21.34■■□□□ 1.01
CXCL12-201ENST00000343575 AGLP35573 1532 aa21.33■■□□□ 1
CXCL12-201ENST00000343575 KANK1Q14678 1352 aa21.32■■□□□ 1
CXCL12-201ENST00000343575 E9PCH4 1651 aa21.32■■□□□ 1
CXCL12-201ENST00000343575 TET3O43151 1660 aa21.32■■□□□ 1
CXCL12-201ENST00000343575 LMTK2Q8IWU2 1503 aa21.31■■□□□ 1
CXCL12-201ENST00000343575 RPRD2Q5VT52 1461 aaKnown RBP21.3■■□□□ 1
CXCL12-201ENST00000343575 CEP152O94986 1710 aa21.29■■□□□ 1
CXCL12-201ENST00000343575 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
CXCL12-201ENST00000343575 ABCC3O15438 1527 aa21.27■■□□□ 1
CXCL12-201ENST00000343575 EFCAB6Q5THR3 1501 aa21.26■□□□□ 0.99
CXCL12-201ENST00000343575 PTPRTO14522 1441 aa21.24■□□□□ 0.99
CXCL12-201ENST00000343575 WASHC2CQ9Y4E1 1318 aa21.24■□□□□ 0.99
CXCL12-201ENST00000343575 TONSLQ96HA7 1378 aa21.22■□□□□ 0.99
CXCL12-201ENST00000343575 SCAF1Q9H7N4 1312 aaKnown RBP21.22■□□□□ 0.99
CXCL12-201ENST00000343575 NPATQ14207 1427 aa21.22■□□□□ 0.99
CXCL12-201ENST00000343575 PPP1R15AO75807 674 aaPredicted RBP21.21■□□□□ 0.99
CXCL12-201ENST00000343575 CAMSAP1Q5T5Y3 1602 aa21.2■□□□□ 0.98
CXCL12-201ENST00000343575 L3MBTL2Q969R5 705 aa21.2■□□□□ 0.98
CXCL12-201ENST00000343575 ZC3H13Q5T200 1668 aaKnown RBP21.19■□□□□ 0.98
CXCL12-201ENST00000343575 SPHKAPQ2M3C7 1700 aa21.19■□□□□ 0.98
CXCL12-201ENST00000343575 CCDC144AA2RUR9 1427 aa21.18■□□□□ 0.98
CXCL12-201ENST00000343575 TRPM2O94759 1503 aa21.18■□□□□ 0.98
CXCL12-201ENST00000343575 MLECQ14165 292 aa21.17■□□□□ 0.98
CXCL12-201ENST00000343575 PPP6R1Q9UPN7 881 aa21.17■□□□□ 0.98
CXCL12-201ENST00000343575 ARHGAP31Q2M1Z3 1444 aa21.16■□□□□ 0.98
CXCL12-201ENST00000343575 CFAP65Q6ZU64 1925 aaKnown RBP21.14■□□□□ 0.97
CXCL12-201ENST00000343575 CLTCL1P53675 1640 aa21.12■□□□□ 0.97
CXCL12-201ENST00000343575 NOS1P29475 1434 aa21.12■□□□□ 0.97
CXCL12-201ENST00000343575 UGGT1Q9NYU2 1555 aa21.12■□□□□ 0.97
CXCL12-201ENST00000343575 ARID4BQ4LE39 1312 aaPredicted RBP21.12■□□□□ 0.97
CXCL12-201ENST00000343575 CLTCQ00610 1675 aaKnown RBP21.11■□□□□ 0.97
CXCL12-201ENST00000343575 SPATA31E1Q6ZUB1 1445 aa21.09■□□□□ 0.97
CXCL12-201ENST00000343575 MYT1Q01538 1121 aa21.09■□□□□ 0.97
CXCL12-201ENST00000343575 CNTLNQ9NXG0 1405 aa21.08■□□□□ 0.96
CXCL12-201ENST00000343575 SYNMO15061 1565 aa21.07■□□□□ 0.96
CXCL12-201ENST00000343575 NBPF8Q3BBV2 869 aa21.06■□□□□ 0.96
CXCL12-201ENST00000343575 FBXO31Q5XUX0 539 aaPredicted RBP21.06■□□□□ 0.96
CXCL12-201ENST00000343575 RGL3Q3MIN7 710 aa21.05■□□□□ 0.96
CXCL12-201ENST00000343575 PREX1Q8TCU6 1659 aa21.04■□□□□ 0.96
CXCL12-201ENST00000343575 ZMYM3Q14202 1370 aa21.03■□□□□ 0.96
CXCL12-201ENST00000343575 PIK3C2BO00750 1634 aa21.03■□□□□ 0.96
CXCL12-201ENST00000343575 ERVK-7P63135 1459 aa21.01■□□□□ 0.95
CXCL12-201ENST00000343575 DCAF11Q8TEB1 546 aa21.01■□□□□ 0.95
CXCL12-201ENST00000343575 NEURL4Q96JN8 1562 aa21■□□□□ 0.95
CXCL12-201ENST00000343575 UHRF1BP1Q6BDS2 1440 aa20.99■□□□□ 0.95
CXCL12-201ENST00000343575 IDI1Q13907 227 aa20.98■□□□□ 0.95
CXCL12-201ENST00000343575 SPATA31D1Q6ZQQ2 1576 aa20.98■□□□□ 0.95
CXCL12-201ENST00000343575 MROH2AA6NES4 1674 aa20.98■□□□□ 0.95
CXCL12-201ENST00000343575 KDM2AQ9Y2K7 1162 aa20.98■□□□□ 0.95
CXCL12-201ENST00000343575 KIF1BO60333 1816 aa20.97■□□□□ 0.95
CXCL12-201ENST00000343575 ADGRB3O60242 1522 aa20.97■□□□□ 0.95
CXCL12-201ENST00000343575 ESF1Q9H501 851 aaKnown RBP20.96■□□□□ 0.95
CXCL12-201ENST00000343575 SLC52A1Q9NWF4 448 aa20.95■□□□□ 0.94
CXCL12-201ENST00000343575 FER1L4A9Z1Z3 1794 aa20.94■□□□□ 0.94
CXCL12-201ENST00000343575 CENPBP07199 599 aaPredicted RBP20.94■□□□□ 0.94
CXCL12-201ENST00000343575 PRAG1Q86YV5 1406 aa20.92■□□□□ 0.94
CXCL12-201ENST00000343575 CEBPAP49715 358 aaPredicted RBP20.92■□□□□ 0.94
CXCL12-201ENST00000343575 ZNF326Q5BKZ1 582 aaKnown RBP20.91■□□□□ 0.94
CXCL12-201ENST00000343575 ZNF316A6NFI3 1004 aaPredicted RBP20.9■□□□□ 0.94
CXCL12-201ENST00000343575 C3P01024 1663 aa20.9■□□□□ 0.94
CXCL12-201ENST00000343575 ADAMTSL3P82987 1691 aa20.9■□□□□ 0.94
CXCL12-201ENST00000343575 IFT172Q9UG01 1749 aa20.89■□□□□ 0.94
CXCL12-201ENST00000343575 MADDQ8WXG6 1647 aa20.89■□□□□ 0.94
CXCL12-201ENST00000343575 CHGAP10645 457 aaKnown RBP20.89■□□□□ 0.93
CXCL12-201ENST00000343575 TMEM131LA2VDJ0 1609 aa20.89■□□□□ 0.93
CXCL12-201ENST00000343575 RALGAPBQ86X10 1494 aa20.87■□□□□ 0.93
CXCL12-201ENST00000343575 MYO5BQ9ULV0 1848 aa20.87■□□□□ 0.93
CXCL12-201ENST00000343575 STAC3Q96MF2 364 aa20.86■□□□□ 0.93
CXCL12-201ENST00000343575 TNRQ92752 1358 aa20.85■□□□□ 0.93
CXCL12-201ENST00000343575 TRPM1Q7Z4N2 1603 aa20.85■□□□□ 0.93
CXCL12-201ENST00000343575 MYOM2P54296 1465 aa20.84■□□□□ 0.93
CXCL12-201ENST00000343575 PPLO60437 1756 aa20.84■□□□□ 0.93
CXCL12-201ENST00000343575 ADGRF5Q8IZF2 1346 aa20.84■□□□□ 0.93
CXCL12-201ENST00000343575 NRXN1Q9ULB1 1477 aa20.83■□□□□ 0.93
CXCL12-201ENST00000343575 RIMS1Q86UR5 1692 aaKnown RBP20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms