RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FOXD1Q16676 465 aa14.62□□□□□ -0.07
HMGB3-201ENST00000325307 NEUROD1Q13562 356 aa14.6□□□□□ -0.07
HMGB3-201ENST00000325307 ABCA6Q8N139 1617 aa14.6□□□□□ -0.07
HMGB3-201ENST00000325307 PKD2Q13563 968 aa14.6□□□□□ -0.07
HMGB3-201ENST00000325307 ZMYM4Q5VZL5 1548 aa14.59□□□□□ -0.07
HMGB3-201ENST00000325307 PZPP20742 1482 aa14.59□□□□□ -0.07
HMGB3-201ENST00000325307 MAGI2Q86UL8 1455 aa14.59□□□□□ -0.07
HMGB3-201ENST00000325307 SIN3AQ96ST3 1273 aa14.58□□□□□ -0.07
HMGB3-201ENST00000325307 DIP2CQ9Y2E4 1556 aa14.58□□□□□ -0.08
HMGB3-201ENST00000325307 GGT6Q6P531 493 aa14.58□□□□□ -0.08
HMGB3-201ENST00000325307 KANK1Q14678 1352 aa14.57□□□□□ -0.08
HMGB3-201ENST00000325307 FAM135AQ9P2D6 1515 aa14.56□□□□□ -0.08
HMGB3-201ENST00000325307 UNC13BO14795 1591 aa14.56□□□□□ -0.08
HMGB3-201ENST00000325307 ATP10AO60312 1499 aa14.55□□□□□ -0.08
HMGB3-201ENST00000325307 KDM5DQ9BY66 1539 aa14.55□□□□□ -0.08
HMGB3-201ENST00000325307 EIF2AK4Q9P2K8 1649 aaKnown RBP14.54□□□□□ -0.08
HMGB3-201ENST00000325307 ARID4BQ4LE39 1312 aaPredicted RBP14.51□□□□□ -0.09
HMGB3-201ENST00000325307 IQGAP3Q86VI3 1631 aa14.51□□□□□ -0.09
HMGB3-201ENST00000325307 WASHC2CQ9Y4E1 1318 aa14.5□□□□□ -0.09
HMGB3-201ENST00000325307 ANKRD30BQ9BXX2 1392 aa14.5□□□□□ -0.09
HMGB3-201ENST00000325307 ARHGEF40Q8TER5 1519 aa14.5□□□□□ -0.09
HMGB3-201ENST00000325307 MLECQ14165 292 aa14.5□□□□□ -0.09
HMGB3-201ENST00000325307 DEPDC5O75140 1603 aa14.49□□□□□ -0.09
HMGB3-201ENST00000325307 PRDM15P57071 1507 aaPredicted RBP14.49□□□□□ -0.09
HMGB3-201ENST00000325307 TONSLQ96HA7 1378 aa14.48□□□□□ -0.09
HMGB3-201ENST00000325307 MROH1Q8NDA8 1641 aa14.47□□□□□ -0.09
HMGB3-201ENST00000325307 RNF17Q9BXT8 1623 aaKnown RBP14.47□□□□□ -0.09
HMGB3-201ENST00000325307 REREQ9P2R6 1566 aa14.44□□□□□ -0.1
HMGB3-201ENST00000325307 VWDEQ8N2E2 1590 aa14.44□□□□□ -0.1
HMGB3-201ENST00000325307 ESF1Q9H501 851 aaKnown RBP14.44□□□□□ -0.1
HMGB3-201ENST00000325307 BCORL1Q5H9F3 1711 aa14.44□□□□□ -0.1
HMGB3-201ENST00000325307 AGLP35573 1532 aa14.43□□□□□ -0.1
HMGB3-201ENST00000325307 TET3O43151 1660 aa14.43□□□□□ -0.1
HMGB3-201ENST00000325307 TIMELESSQ9UNS1 1208 aa14.43□□□□□ -0.1
HMGB3-201ENST00000325307 CCDC144AA2RUR9 1427 aa14.42□□□□□ -0.1
HMGB3-201ENST00000325307 CEP152O94986 1710 aa14.42□□□□□ -0.1
HMGB3-201ENST00000325307 ABCC3O15438 1527 aa14.41□□□□□ -0.1
HMGB3-201ENST00000325307 SLC24A1O60721 1099 aa14.41□□□□□ -0.1
HMGB3-201ENST00000325307 RPRD2Q5VT52 1461 aaKnown RBP14.41□□□□□ -0.1
HMGB3-201ENST00000325307 E9PCH4 1651 aa14.4□□□□□ -0.1
HMGB3-201ENST00000325307 EFCAB6Q5THR3 1501 aa14.4□□□□□ -0.1
HMGB3-201ENST00000325307 LMTK2Q8IWU2 1503 aa14.4□□□□□ -0.1
HMGB3-201ENST00000325307 PPP6R1Q9UPN7 881 aa14.39□□□□□ -0.11
HMGB3-201ENST00000325307 SIGLEC1Q9BZZ2 1709 aa14.39□□□□□ -0.11
HMGB3-201ENST00000325307 PLA2R1Q13018 1463 aa14.38□□□□□ -0.11
HMGB3-201ENST00000325307 L3MBTL2Q969R5 705 aa14.38□□□□□ -0.11
HMGB3-201ENST00000325307 NPATQ14207 1427 aa14.37□□□□□ -0.11
HMGB3-201ENST00000325307 RGL3Q3MIN7 710 aa14.37□□□□□ -0.11
HMGB3-201ENST00000325307 PPP1R15AO75807 674 aaPredicted RBP14.36□□□□□ -0.11
HMGB3-201ENST00000325307 CAMSAP1Q5T5Y3 1602 aa14.36□□□□□ -0.11
HMGB3-201ENST00000325307 ZC3H13Q5T200 1668 aaKnown RBP14.35□□□□□ -0.11
HMGB3-201ENST00000325307 PTPRTO14522 1441 aa14.35□□□□□ -0.11
HMGB3-201ENST00000325307 CFAP65Q6ZU64 1925 aaKnown RBP14.34□□□□□ -0.11
HMGB3-201ENST00000325307 SPHKAPQ2M3C7 1700 aa14.34□□□□□ -0.11
HMGB3-201ENST00000325307 TRPM2O94759 1503 aa14.34□□□□□ -0.11
HMGB3-201ENST00000325307 CHGAP10645 457 aaKnown RBP14.33□□□□□ -0.11
HMGB3-201ENST00000325307 ZNF326Q5BKZ1 582 aaKnown RBP14.33□□□□□ -0.11
HMGB3-201ENST00000325307 KDM2AQ9Y2K7 1162 aa14.33□□□□□ -0.12
HMGB3-201ENST00000325307 CLTCQ00610 1675 aaKnown RBP14.32□□□□□ -0.12
HMGB3-201ENST00000325307 ARHGAP31Q2M1Z3 1444 aa14.32□□□□□ -0.12
HMGB3-201ENST00000325307 FBXO31Q5XUX0 539 aaPredicted RBP14.32□□□□□ -0.12
HMGB3-201ENST00000325307 PLPPR3Q6T4P5 718 aa14.32□□□□□ -0.12
HMGB3-201ENST00000325307 DCAF11Q8TEB1 546 aa14.32□□□□□ -0.12
HMGB3-201ENST00000325307 CNTLNQ9NXG0 1405 aa14.3□□□□□ -0.12
HMGB3-201ENST00000325307 SCAF1Q9H7N4 1312 aaKnown RBP14.3□□□□□ -0.12
HMGB3-201ENST00000325307 UGGT1Q9NYU2 1555 aa14.3□□□□□ -0.12
HMGB3-201ENST00000325307 ZMYM3Q14202 1370 aa14.3□□□□□ -0.12
HMGB3-201ENST00000325307 CLTCL1P53675 1640 aa14.29□□□□□ -0.12
HMGB3-201ENST00000325307 NOS1P29475 1434 aa14.28□□□□□ -0.12
HMGB3-201ENST00000325307 SLC52A1Q9NWF4 448 aa14.26□□□□□ -0.13
HMGB3-201ENST00000325307 ERVK-7P63135 1459 aa14.26□□□□□ -0.13
HMGB3-201ENST00000325307 IDI1Q13907 227 aa14.26□□□□□ -0.13
HMGB3-201ENST00000325307 STAG3Q9UJ98 1225 aa14.26□□□□□ -0.13
HMGB3-201ENST00000325307 CEBPAP49715 358 aaPredicted RBP14.25□□□□□ -0.13
HMGB3-201ENST00000325307 SPATA31E1Q6ZUB1 1445 aa14.25□□□□□ -0.13
HMGB3-201ENST00000325307 NBPF8Q3BBV2 869 aa14.25□□□□□ -0.13
HMGB3-201ENST00000325307 PREX1Q8TCU6 1659 aa14.25□□□□□ -0.13
HMGB3-201ENST00000325307 SYNMO15061 1565 aa14.24□□□□□ -0.13
HMGB3-201ENST00000325307 FER1L4A9Z1Z3 1794 aa14.22□□□□□ -0.13
HMGB3-201ENST00000325307 KIF1BO60333 1816 aa14.22□□□□□ -0.13
HMGB3-201ENST00000325307 TNRQ92752 1358 aa14.21□□□□□ -0.14
HMGB3-201ENST00000325307 ZNF316A6NFI3 1004 aaPredicted RBP14.2□□□□□ -0.14
HMGB3-201ENST00000325307 SPATA31D1Q6ZQQ2 1576 aa14.2□□□□□ -0.14
HMGB3-201ENST00000325307 ERICH6Q7L0X2 663 aa14.19□□□□□ -0.14
HMGB3-201ENST00000325307 MROH2AA6NES4 1674 aa14.19□□□□□ -0.14
HMGB3-201ENST00000325307 MADDQ8WXG6 1647 aa14.18□□□□□ -0.14
HMGB3-201ENST00000325307 PIK3C2BO00750 1634 aa14.18□□□□□ -0.14
HMGB3-201ENST00000325307 ADGRB3O60242 1522 aa14.18□□□□□ -0.14
HMGB3-201ENST00000325307 NUTM2DQ5VT03 806 aaPredicted RBP14.18□□□□□ -0.14
HMGB3-201ENST00000325307 DIEXFQ68CQ4 756 aaKnown RBP14.18□□□□□ -0.14
HMGB3-201ENST00000325307 UHRF1BP1Q6BDS2 1440 aa14.17□□□□□ -0.14
HMGB3-201ENST00000325307 STAC3Q96MF2 364 aa14.17□□□□□ -0.14
HMGB3-201ENST00000325307 HIRIP3Q9BW71 556 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-201ENST00000325307 PRAG1Q86YV5 1406 aa14.17□□□□□ -0.14
HMGB3-201ENST00000325307 RIMS1Q86UR5 1692 aaKnown RBP14.16□□□□□ -0.14
HMGB3-201ENST00000325307 RPGRIP1LQ68CZ1 1315 aa14.16□□□□□ -0.14
HMGB3-201ENST00000325307 ROCK2O75116 1388 aaKnown RBP14.15□□□□□ -0.14
HMGB3-201ENST00000325307 NEURL4Q96JN8 1562 aa14.15□□□□□ -0.14
HMGB3-201ENST00000325307 C3P01024 1663 aa14.15□□□□□ -0.14
HMGB3-201ENST00000325307 CARD11Q9BXL7 1154 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms