RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 KDM5CP41229 1560 aa26.44■■□□□ 1.82
USP39-201ENST00000323701 DHX29Q7Z478 1369 aaKnown RBP26.39■■□□□ 1.82
USP39-201ENST00000323701 HIRIP3Q9BW71 556 aaPredicted RBP26.37■■□□□ 1.81
USP39-201ENST00000323701 PLA2R1Q13018 1463 aa26.37■■□□□ 1.81
USP39-201ENST00000323701 KIF3BO15066 747 aa26.36■■□□□ 1.81
USP39-201ENST00000323701 MLH3Q9UHC1 1453 aa26.36■■□□□ 1.81
USP39-201ENST00000323701 DEPDC5O75140 1603 aa26.35■■□□□ 1.81
USP39-201ENST00000323701 TSPOAP1O95153 1857 aa26.35■■□□□ 1.81
USP39-201ENST00000323701 NBPF8Q3BBV2 869 aa26.34■■□□□ 1.81
USP39-201ENST00000323701 HECW2Q9P2P5 1572 aa26.34■■□□□ 1.81
USP39-201ENST00000323701 PPRC1Q5VV67 1664 aaKnown RBP26.34■■□□□ 1.81
USP39-201ENST00000323701 FRMPD1Q5SYB0 1578 aa26.32■■□□□ 1.8
USP39-201ENST00000323701 RICTORQ6R327 1708 aa26.32■■□□□ 1.8
USP39-201ENST00000323701 ABCA6Q8N139 1617 aa26.31■■□□□ 1.8
USP39-201ENST00000323701 MROH1Q8NDA8 1641 aa26.31■■□□□ 1.8
USP39-201ENST00000323701 A2MP01023 1474 aa26.3■■□□□ 1.8
USP39-201ENST00000323701 EIF2AK4Q9P2K8 1649 aaKnown RBP26.29■■□□□ 1.8
USP39-201ENST00000323701 VWDEQ8N2E2 1590 aa26.27■■□□□ 1.8
USP39-201ENST00000323701 KIF13AQ9H1H9 1805 aa26.27■■□□□ 1.8
USP39-201ENST00000323701 E9PCH4 1651 aa26.26■■□□□ 1.79
USP39-201ENST00000323701 PRDM15P57071 1507 aaPredicted RBP26.25■■□□□ 1.79
USP39-201ENST00000323701 YEATS2Q9ULM3 1422 aa26.24■■□□□ 1.79
USP39-201ENST00000323701 CCDC144AA2RUR9 1427 aa26.23■■□□□ 1.79
USP39-201ENST00000323701 DIP2CQ9Y2E4 1556 aa26.22■■□□□ 1.79
USP39-201ENST00000323701 ATP10AO60312 1499 aa26.21■■□□□ 1.79
USP39-201ENST00000323701 TET3O43151 1660 aa26.18■■□□□ 1.78
USP39-201ENST00000323701 KANK1Q14678 1352 aa26.18■■□□□ 1.78
USP39-201ENST00000323701 ZNF326Q5BKZ1 582 aaKnown RBP26.18■■□□□ 1.78
USP39-201ENST00000323701 MIER1Q8N108 512 aa26.18■■□□□ 1.78
USP39-201ENST00000323701 RNF17Q9BXT8 1623 aaKnown RBP26.18■■□□□ 1.78
USP39-201ENST00000323701 HSPA5P11021 654 aaKnown RBP26.15■■□□□ 1.78
USP39-201ENST00000323701 RGL3Q3MIN7 710 aa26.15■■□□□ 1.78
USP39-201ENST00000323701 GGT6Q6P531 493 aa26.15■■□□□ 1.78
USP39-201ENST00000323701 KDM2AQ9Y2K7 1162 aa26.15■■□□□ 1.78
USP39-201ENST00000323701 DCAF11Q8TEB1 546 aa26.14■■□□□ 1.78
USP39-201ENST00000323701 COL17A1Q9UMD9 1497 aaPredicted RBP26.14■■□□□ 1.78
USP39-201ENST00000323701 PTPRTO14522 1441 aa26.13■■□□□ 1.77
USP39-201ENST00000323701 CEP152O94986 1710 aa26.12■■□□□ 1.77
USP39-201ENST00000323701 ZMYM4Q5VZL5 1548 aa26.12■■□□□ 1.77
USP39-201ENST00000323701 BCORL1Q5H9F3 1711 aa26.11■■□□□ 1.77
USP39-201ENST00000323701 UHRF1BP1Q6BDS2 1440 aa26.1■■□□□ 1.77
USP39-201ENST00000323701 SPHKAPQ2M3C7 1700 aa26.1■■□□□ 1.77
USP39-201ENST00000323701 TRPM2O94759 1503 aa26.09■■□□□ 1.77
USP39-201ENST00000323701 EFCAB6Q5THR3 1501 aa26.09■■□□□ 1.77
USP39-201ENST00000323701 EIF4G2P78344 907 aaKnown RBP eCLIP26.07■■□□□ 1.76
USP39-201ENST00000323701 DDX10Q13206 875 aaKnown RBP26.07■■□□□ 1.76
USP39-201ENST00000323701 LMTK2Q8IWU2 1503 aa26.07■■□□□ 1.76
USP39-201ENST00000323701 CLTCL1P53675 1640 aa26.07■■□□□ 1.76
USP39-201ENST00000323701 SPATA31E1Q6ZUB1 1445 aa26.06■■□□□ 1.76
USP39-201ENST00000323701 UGGT1Q9NYU2 1555 aa26.05■■□□□ 1.76
USP39-201ENST00000323701 ABCC3O15438 1527 aa26.03■■□□□ 1.76
USP39-201ENST00000323701 WASHC2CQ9Y4E1 1318 aa26.02■■□□□ 1.76
USP39-201ENST00000323701 NPATQ14207 1427 aa26.02■■□□□ 1.76
USP39-201ENST00000323701 RALGAPBQ86X10 1494 aa26■■□□□ 1.75
USP39-201ENST00000323701 PRAG1Q86YV5 1406 aa26■■□□□ 1.75
USP39-201ENST00000323701 C11orf95C9JLR9 678 aaPredicted RBP26■■□□□ 1.75
USP39-201ENST00000323701 CFAP65Q6ZU64 1925 aaKnown RBP25.99■■□□□ 1.75
USP39-201ENST00000323701 WASHC2AQ641Q2 1341 aa25.98■■□□□ 1.75
USP39-201ENST00000323701 SIGLEC1Q9BZZ2 1709 aa25.98■■□□□ 1.75
USP39-201ENST00000323701 USP47Q96K76 1375 aa25.94■■□□□ 1.74
USP39-201ENST00000323701 CAMSAP1Q5T5Y3 1602 aa25.94■■□□□ 1.74
USP39-201ENST00000323701 NBPF1Q3BBV0 1214 aa25.93■■□□□ 1.74
USP39-201ENST00000323701 CARD11Q9BXL7 1154 aa25.92■■□□□ 1.74
USP39-201ENST00000323701 TRPM1Q7Z4N2 1603 aa25.92■■□□□ 1.74
USP39-201ENST00000323701 ROCK2O75116 1388 aaKnown RBP25.89■■□□□ 1.73
USP39-201ENST00000323701 REREQ9P2R6 1566 aa25.88■■□□□ 1.73
USP39-201ENST00000323701 ARHGEF40Q8TER5 1519 aa25.86■■□□□ 1.73
USP39-201ENST00000323701 MROH2AA6NES4 1674 aa25.86■■□□□ 1.73
USP39-201ENST00000323701 AGLP35573 1532 aa25.84■■□□□ 1.73
USP39-201ENST00000323701 NOS1P29475 1434 aa25.84■■□□□ 1.73
USP39-201ENST00000323701 CCDC7Q96M83 1385 aa25.84■■□□□ 1.73
USP39-201ENST00000323701 ZC3H13Q5T200 1668 aaKnown RBP25.84■■□□□ 1.73
USP39-201ENST00000323701 CNTLNQ9NXG0 1405 aa25.83■■□□□ 1.73
USP39-201ENST00000323701 MADDQ8WXG6 1647 aa25.83■■□□□ 1.73
USP39-201ENST00000323701 KIF1BO60333 1816 aa25.83■■□□□ 1.72
USP39-201ENST00000323701 SYNMO15061 1565 aa25.82■■□□□ 1.72
USP39-201ENST00000323701 KIF7Q2M1P5 1343 aa25.82■■□□□ 1.72
USP39-201ENST00000323701 TRHP20396 242 aaPredicted RBP25.82■■□□□ 1.72
USP39-201ENST00000323701 ARHGAP31Q2M1Z3 1444 aa25.82■■□□□ 1.72
USP39-201ENST00000323701 NEURL4Q96JN8 1562 aa25.81■■□□□ 1.72
USP39-201ENST00000323701 GPRASP1Q5JY77 1395 aa25.81■■□□□ 1.72
USP39-201ENST00000323701 ST20-MTHFSA0A0A6YYL1 179 aa25.8■■□□□ 1.72
USP39-201ENST00000323701 MLECQ14165 292 aa25.8■■□□□ 1.72
USP39-201ENST00000323701 DNAJC5Q9H3Z4 198 aa25.8■■□□□ 1.72
USP39-201ENST00000323701 ADGRB3O60242 1522 aa25.79■■□□□ 1.72
USP39-201ENST00000323701 CHGAP10645 457 aaKnown RBP25.78■■□□□ 1.72
USP39-201ENST00000323701 FBXO31Q5XUX0 539 aaPredicted RBP25.78■■□□□ 1.72
USP39-201ENST00000323701 ADGRF5Q8IZF2 1346 aa25.76■■□□□ 1.71
USP39-201ENST00000323701 PIK3C2BO00750 1634 aa25.75■■□□□ 1.71
USP39-201ENST00000323701 POLR1AO95602 1720 aaPredicted RBP25.75■■□□□ 1.71
USP39-201ENST00000323701 IFT172Q9UG01 1749 aa25.74■■□□□ 1.71
USP39-201ENST00000323701 YTHDC1Q96MU7 727 aaKnown RBP25.74■■□□□ 1.71
USP39-201ENST00000323701 PREX1Q8TCU6 1659 aa25.73■■□□□ 1.71
USP39-201ENST00000323701 IDI1Q13907 227 aa25.73■■□□□ 1.71
USP39-201ENST00000323701 CLTCQ00610 1675 aaKnown RBP25.72■■□□□ 1.71
USP39-201ENST00000323701 LAMC1P11047 1609 aa25.71■■□□□ 1.71
USP39-201ENST00000323701 MYOM2P54296 1465 aa25.7■■□□□ 1.7
USP39-201ENST00000323701 STAC3Q96MF2 364 aa25.7■■□□□ 1.7
USP39-201ENST00000323701 PPP6R1Q9UPN7 881 aa25.68■■□□□ 1.7
USP39-201ENST00000323701 CFAP70Q5T0N1 1121 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms