RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 ESF1Q9H501 851 aaKnown RBP33.66■■■□□ 2.98
HOXD4-201ENST00000306324 CLTCQ00610 1675 aaKnown RBP33.64■■■□□ 2.98
HOXD4-201ENST00000306324 NAIPQ13075 1403 aa33.64■■■□□ 2.98
HOXD4-201ENST00000306324 DEPDC5O75140 1603 aa33.63■■■□□ 2.97
HOXD4-201ENST00000306324 MROH1Q8NDA8 1641 aa33.63■■■□□ 2.97
HOXD4-201ENST00000306324 HFM1A2PYH4 1435 aa33.62■■■□□ 2.97
HOXD4-201ENST00000306324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.59■■■□□ 2.97
HOXD4-201ENST00000306324 PPP6R1Q9UPN7 881 aa33.58■■■□□ 2.97
HOXD4-201ENST00000306324 PRDM15P57071 1507 aaPredicted RBP33.58■■■□□ 2.97
HOXD4-201ENST00000306324 PTPRMP28827 1452 aa33.56■■■□□ 2.96
HOXD4-201ENST00000306324 KDM5DQ9BY66 1539 aa33.56■■■□□ 2.96
HOXD4-201ENST00000306324 CEP152O94986 1710 aa33.56■■■□□ 2.96
HOXD4-201ENST00000306324 CNTLNQ9NXG0 1405 aa33.56■■■□□ 2.96
HOXD4-201ENST00000306324 WASHC2CQ9Y4E1 1318 aa33.55■■■□□ 2.96
HOXD4-201ENST00000306324 MROH2AA6NES4 1674 aa33.55■■■□□ 2.96
HOXD4-201ENST00000306324 PLPPR3Q6T4P5 718 aa33.54■■■□□ 2.96
HOXD4-201ENST00000306324 ZC3H13Q5T200 1668 aaKnown RBP33.54■■■□□ 2.96
HOXD4-201ENST00000306324 FAM135AQ9P2D6 1515 aa33.53■■■□□ 2.96
HOXD4-201ENST00000306324 UNC13BO14795 1591 aa33.53■■■□□ 2.96
HOXD4-201ENST00000306324 C3P01024 1663 aa33.52■■■□□ 2.96
HOXD4-201ENST00000306324 KANK1Q14678 1352 aa33.51■■■□□ 2.96
HOXD4-201ENST00000306324 ABCC3O15438 1527 aa33.5■■■□□ 2.95
HOXD4-201ENST00000306324 TRIM26Q12899 539 aaPredicted RBP33.48■■■□□ 2.95
HOXD4-201ENST00000306324 CEBPAP49715 358 aaPredicted RBP33.46■■■□□ 2.95
HOXD4-201ENST00000306324 ZMYM3Q14202 1370 aa33.46■■■□□ 2.95
HOXD4-201ENST00000306324 VWDEQ8N2E2 1590 aa33.45■■■□□ 2.95
HOXD4-201ENST00000306324 CAMSAP1Q5T5Y3 1602 aa33.44■■■□□ 2.94
HOXD4-201ENST00000306324 AEBP2Q6ZN18 517 aaPredicted RBP33.44■■■□□ 2.94
HOXD4-201ENST00000306324 SETD5Q9C0A6 1442 aa33.43■■■□□ 2.94
HOXD4-201ENST00000306324 CFAP65Q6ZU64 1925 aaKnown RBP33.42■■■□□ 2.94
HOXD4-201ENST00000306324 NUP155O75694 1391 aa33.4■■■□□ 2.94
HOXD4-201ENST00000306324 IQGAP3Q86VI3 1631 aa33.4■■■□□ 2.94
HOXD4-201ENST00000306324 LMTK2Q8IWU2 1503 aa33.37■■■□□ 2.93
HOXD4-201ENST00000306324 TRIM52Q96A61 297 aa33.37■■■□□ 2.93
HOXD4-201ENST00000306324 TET3O43151 1660 aa33.35■■■□□ 2.93
HOXD4-201ENST00000306324 RAB3GAP2Q9H2M9 1393 aa33.34■■■□□ 2.93
HOXD4-201ENST00000306324 PZPP20742 1482 aa33.33■■■□□ 2.93
HOXD4-201ENST00000306324 EFCAB6Q5THR3 1501 aa33.32■■■□□ 2.92
HOXD4-201ENST00000306324 SETD1BQ9UPS6 1966 aaKnown RBP33.31■■■□□ 2.92
HOXD4-201ENST00000306324 FBXO31Q5XUX0 539 aaPredicted RBP33.27■■■□□ 2.92
HOXD4-201ENST00000306324 NPATQ14207 1427 aa33.26■■■□□ 2.92
HOXD4-201ENST00000306324 ARHGAP31Q2M1Z3 1444 aa33.26■■■□□ 2.92
HOXD4-201ENST00000306324 PREX1Q8TCU6 1659 aa33.26■■■□□ 2.92
HOXD4-201ENST00000306324 E9PCH4 1651 aa33.25■■■□□ 2.91
HOXD4-201ENST00000306324 ACIN1Q9UKV3 1341 aaKnown RBP33.21■■■□□ 2.91
HOXD4-201ENST00000306324 ERVK-7P63135 1459 aa33.21■■■□□ 2.91
HOXD4-201ENST00000306324 SPATA31D1Q6ZQQ2 1576 aa33.19■■■□□ 2.9
HOXD4-201ENST00000306324 SLC4A1APQ9BWU0 796 aaKnown RBP33.18■■■□□ 2.9
HOXD4-201ENST00000306324 RPRD2Q5VT52 1461 aaKnown RBP33.18■■■□□ 2.9
HOXD4-201ENST00000306324 TNRQ92752 1358 aa33.17■■■□□ 2.9
HOXD4-201ENST00000306324 MYO3AQ8NEV4 1616 aa33.16■■■□□ 2.9
HOXD4-201ENST00000306324 HRCP23327 699 aa33.15■■■□□ 2.9
HOXD4-201ENST00000306324 UHRF1BP1Q6BDS2 1440 aa33.13■■■□□ 2.89
HOXD4-201ENST00000306324 PKD2Q13563 968 aa33.11■■■□□ 2.89
HOXD4-201ENST00000306324 MPHOSPH9Q99550 1183 aa33.11■■■□□ 2.89
HOXD4-201ENST00000306324 PCGF6Q9BYE7 350 aa33.11■■■□□ 2.89
HOXD4-201ENST00000306324 SPHKAPQ2M3C7 1700 aa33.09■■■□□ 2.89
HOXD4-201ENST00000306324 SYNMO15061 1565 aa33.08■■■□□ 2.89
HOXD4-201ENST00000306324 NOS1P29475 1434 aa33.08■■■□□ 2.89
HOXD4-201ENST00000306324 LMTK3Q96Q04 1460 aa33.07■■■□□ 2.88
HOXD4-201ENST00000306324 ZNF142P52746 1687 aaPredicted RBP33.06■■■□□ 2.88
HOXD4-201ENST00000306324 CEP170BQ9Y4F5 1589 aaPredicted RBP33.05■■■□□ 2.88
HOXD4-201ENST00000306324 NLRP1Q9C000 1473 aa33.03■■■□□ 2.88
HOXD4-201ENST00000306324 FOXD1Q16676 465 aa33.02■■■□□ 2.88
HOXD4-201ENST00000306324 A2ML1A8K2U0 1454 aa33■■■□□ 2.87
HOXD4-201ENST00000306324 PIK3C2BO00750 1634 aa32.98■■■□□ 2.87
HOXD4-201ENST00000306324 UGGT1Q9NYU2 1555 aa32.97■■■□□ 2.87
HOXD4-201ENST00000306324 PTPRTO14522 1441 aa32.96■■■□□ 2.87
HOXD4-201ENST00000306324 HSPA2P54652 639 aa32.95■■■□□ 2.87
HOXD4-201ENST00000306324 IDI1Q13907 227 aa32.94■■■□□ 2.86
HOXD4-201ENST00000306324 SLC52A1Q9NWF4 448 aa32.94■■■□□ 2.86
HOXD4-201ENST00000306324 TRPM2O94759 1503 aa32.94■■■□□ 2.86
HOXD4-201ENST00000306324 UBR1Q8IWV7 1749 aa32.94■■■□□ 2.86
HOXD4-201ENST00000306324 PLA2R1Q13018 1463 aa32.91■■■□□ 2.86
HOXD4-201ENST00000306324 MYO5BQ9ULV0 1848 aa32.9■■■□□ 2.86
HOXD4-201ENST00000306324 STAG3Q9UJ98 1225 aa32.9■■■□□ 2.86
HOXD4-201ENST00000306324 CLTCL1P53675 1640 aa32.89■■■□□ 2.86
HOXD4-201ENST00000306324 KDM5AP29375 1690 aaKnown RBP32.87■■■□□ 2.85
HOXD4-201ENST00000306324 ADGRB3O60242 1522 aa32.85■■■□□ 2.85
HOXD4-201ENST00000306324 KIF1BO60333 1816 aa32.85■■■□□ 2.85
HOXD4-201ENST00000306324 THEMISQ8N1K5 641 aaPredicted RBP32.85■■■□□ 2.85
HOXD4-201ENST00000306324 CHGAP10645 457 aaKnown RBP32.84■■■□□ 2.85
HOXD4-201ENST00000306324 TMEM131LA2VDJ0 1609 aa32.83■■■□□ 2.85
HOXD4-201ENST00000306324 CCDC144AA2RUR9 1427 aa32.8■■■□□ 2.84
HOXD4-201ENST00000306324 STRCQ7RTU9 1775 aa32.77■■■□□ 2.84
HOXD4-201ENST00000306324 DHX57Q6P158 1386 aaKnown RBP32.75■■■□□ 2.83
HOXD4-201ENST00000306324 ANKRD30BQ9BXX2 1392 aa32.75■■■□□ 2.83
HOXD4-201ENST00000306324 POLR1AO95602 1720 aaPredicted RBP32.75■■■□□ 2.83
HOXD4-201ENST00000306324 SLIT1O75093 1534 aa32.71■■■□□ 2.83
HOXD4-201ENST00000306324 TMEM2Q9UHN6 1383 aa32.7■■■□□ 2.83
HOXD4-201ENST00000306324 NCKAP5LQ9HCH0 1330 aa32.69■■■□□ 2.82
HOXD4-201ENST00000306324 ARHGAP23Q9P227 1491 aa32.68■■■□□ 2.82
HOXD4-201ENST00000306324 ZNF326Q5BKZ1 582 aaKnown RBP32.67■■■□□ 2.82
HOXD4-201ENST00000306324 ANKLE2Q86XL3 938 aa32.67■■■□□ 2.82
HOXD4-201ENST00000306324 EID1Q9Y6B2 187 aa32.64■■■□□ 2.82
HOXD4-201ENST00000306324 TXNDC2Q86VQ3 553 aa32.63■■■□□ 2.81
HOXD4-201ENST00000306324 RIMS2Q9UQ26 1411 aa32.63■■■□□ 2.81
HOXD4-201ENST00000306324 SCAF11Q99590 1463 aaKnown RBP32.62■■■□□ 2.81
HOXD4-201ENST00000306324 NEURL4Q96JN8 1562 aa32.62■■■□□ 2.81
HOXD4-201ENST00000306324 LTKP29376 864 aa32.61■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms