RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 PLA2R1Q13018 1463 aa27.3■■□□□ 1.96
HOXC4-201ENST00000303406 ZNF518AQ6AHZ1 1483 aa27.28■■□□□ 1.96
HOXC4-201ENST00000303406 CD109Q6YHK3 1445 aa27.27■■□□□ 1.96
HOXC4-201ENST00000303406 YTHDC1Q96MU7 727 aaKnown RBP27.27■■□□□ 1.96
HOXC4-201ENST00000303406 VWDEQ8N2E2 1590 aa27.27■■□□□ 1.96
HOXC4-201ENST00000303406 WASHC2AQ641Q2 1341 aa27.25■■□□□ 1.95
HOXC4-201ENST00000303406 CCER2I3L3R5 266 aa27.25■■□□□ 1.95
HOXC4-201ENST00000303406 KDM5CP41229 1560 aa27.24■■□□□ 1.95
HOXC4-201ENST00000303406 DHX29Q7Z478 1369 aaKnown RBP27.23■■□□□ 1.95
HOXC4-201ENST00000303406 ANP32CO43423 234 aa27.23■■□□□ 1.95
HOXC4-201ENST00000303406 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.23■■□□□ 1.95
HOXC4-201ENST00000303406 KIDINS220Q9ULH0 1771 aa27.23■■□□□ 1.95
HOXC4-201ENST00000303406 TET3O43151 1660 aa27.23■■□□□ 1.95
HOXC4-201ENST00000303406 SCAF1Q9H7N4 1312 aaKnown RBP27.22■■□□□ 1.95
HOXC4-201ENST00000303406 NEO1Q92859 1461 aa27.22■■□□□ 1.95
HOXC4-201ENST00000303406 PRDM15P57071 1507 aaPredicted RBP27.21■■□□□ 1.95
HOXC4-201ENST00000303406 CCDC7Q96M83 1385 aa27.21■■□□□ 1.95
HOXC4-201ENST00000303406 POGZQ7Z3K3 1410 aa27.2■■□□□ 1.94
HOXC4-201ENST00000303406 E9PCH4 1651 aa27.19■■□□□ 1.94
HOXC4-201ENST00000303406 MLH3Q9UHC1 1453 aa27.18■■□□□ 1.94
HOXC4-201ENST00000303406 CNTLNQ9NXG0 1405 aa27.18■■□□□ 1.94
HOXC4-201ENST00000303406 KANK1Q14678 1352 aa27.17■■□□□ 1.94
HOXC4-201ENST00000303406 TRPM2O94759 1503 aa27.17■■□□□ 1.94
HOXC4-201ENST00000303406 GLI2P10070 1586 aa27.17■■□□□ 1.94
HOXC4-201ENST00000303406 USP47Q96K76 1375 aa27.16■■□□□ 1.94
HOXC4-201ENST00000303406 PTPRTO14522 1441 aa27.15■■□□□ 1.94
HOXC4-201ENST00000303406 MROH1Q8NDA8 1641 aa27.15■■□□□ 1.94
HOXC4-201ENST00000303406 ARID4BQ4LE39 1312 aaPredicted RBP27.14■■□□□ 1.94
HOXC4-201ENST00000303406 PRAG1Q86YV5 1406 aa27.14■■□□□ 1.94
HOXC4-201ENST00000303406 SPHKAPQ2M3C7 1700 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 HECW2Q9P2P5 1572 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 RIMBP3CA6NJZ7 1639 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 RIMBP3BA6NNM3 1639 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 LAMC1P11047 1609 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 TRPM1Q7Z4N2 1603 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 RNF17Q9BXT8 1623 aaKnown RBP27.13■■□□□ 1.93
HOXC4-201ENST00000303406 RIMBP3Q9UFD9 1639 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 A2MP01023 1474 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 BCORL1Q5H9F3 1711 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 MAP3K4Q9Y6R4 1608 aa27.13■■□□□ 1.93
HOXC4-201ENST00000303406 NEURL4Q96JN8 1562 aa27.12■■□□□ 1.93
HOXC4-201ENST00000303406 LMTK2Q8IWU2 1503 aa27.11■■□□□ 1.93
HOXC4-201ENST00000303406 DCAF11Q8TEB1 546 aa27.11■■□□□ 1.93
HOXC4-201ENST00000303406 CEP152O94986 1710 aa27.09■■□□□ 1.93
HOXC4-201ENST00000303406 GPRASP1Q5JY77 1395 aa27.07■■□□□ 1.92
HOXC4-201ENST00000303406 C11orf95C9JLR9 678 aaPredicted RBP27.07■■□□□ 1.92
HOXC4-201ENST00000303406 ZNF326Q5BKZ1 582 aaKnown RBP27.07■■□□□ 1.92
HOXC4-201ENST00000303406 KIF7Q2M1P5 1343 aa27.06■■□□□ 1.92
HOXC4-201ENST00000303406 STAC3Q96MF2 364 aa27.05■■□□□ 1.92
HOXC4-201ENST00000303406 KIF3BO15066 747 aa27.04■■□□□ 1.92
HOXC4-201ENST00000303406 CARD11Q9BXL7 1154 aa27.04■■□□□ 1.92
HOXC4-201ENST00000303406 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
HOXC4-201ENST00000303406 MYT1LQ9UL68 1186 aa27.03■■□□□ 1.92
HOXC4-201ENST00000303406 FRMPD1Q5SYB0 1578 aa27.03■■□□□ 1.92
HOXC4-201ENST00000303406 KDM2AQ9Y2K7 1162 aa27.02■■□□□ 1.92
HOXC4-201ENST00000303406 CLTCL1P53675 1640 aa27.01■■□□□ 1.91
HOXC4-201ENST00000303406 ROCK2O75116 1388 aaKnown RBP27■■□□□ 1.91
HOXC4-201ENST00000303406 ABCA6Q8N139 1617 aa26.99■■□□□ 1.91
HOXC4-201ENST00000303406 GTF3C3Q9Y5Q9 886 aa26.99■■□□□ 1.91
HOXC4-201ENST00000303406 RICTORQ6R327 1708 aa26.98■■□□□ 1.91
HOXC4-201ENST00000303406 CYB5RLQ6IPT4 315 aa26.95■■□□□ 1.91
HOXC4-201ENST00000303406 PPRC1Q5VV67 1664 aaKnown RBP26.95■■□□□ 1.91
HOXC4-201ENST00000303406 RGL3Q3MIN7 710 aa26.94■■□□□ 1.9
HOXC4-201ENST00000303406 DIP2BQ9P265 1576 aa26.94■■□□□ 1.9
HOXC4-201ENST00000303406 MADDQ8WXG6 1647 aa26.93■■□□□ 1.9
HOXC4-201ENST00000303406 DIP2CQ9Y2E4 1556 aa26.92■■□□□ 1.9
HOXC4-201ENST00000303406 ZMYM4Q5VZL5 1548 aa26.88■■□□□ 1.89
HOXC4-201ENST00000303406 KIAA1210Q9ULL0 1709 aa26.87■■□□□ 1.89
HOXC4-201ENST00000303406 ST20-MTHFSA0A0A6YYL1 179 aa26.86■■□□□ 1.89
HOXC4-201ENST00000303406 KIF1BO60333 1816 aa26.86■■□□□ 1.89
HOXC4-201ENST00000303406 PRKRIP1Q9H875 184 aaPredicted RBP26.86■■□□□ 1.89
HOXC4-201ENST00000303406 ABCC3O15438 1527 aa26.84■■□□□ 1.89
HOXC4-201ENST00000303406 MYOM2P54296 1465 aa26.84■■□□□ 1.89
HOXC4-201ENST00000303406 ZC3H13Q5T200 1668 aaKnown RBP26.83■■□□□ 1.89
HOXC4-201ENST00000303406 IFT172Q9UG01 1749 aa26.81■■□□□ 1.88
HOXC4-201ENST00000303406 NBPF1Q3BBV0 1214 aa26.8■■□□□ 1.88
HOXC4-201ENST00000303406 IQGAP1P46940 1657 aa26.8■■□□□ 1.88
HOXC4-201ENST00000303406 RAPGEF3O95398 923 aa26.8■■□□□ 1.88
HOXC4-201ENST00000303406 CAMSAP1Q5T5Y3 1602 aa26.79■■□□□ 1.88
HOXC4-201ENST00000303406 COL17A1Q9UMD9 1497 aaPredicted RBP26.78■■□□□ 1.88
HOXC4-201ENST00000303406 NPATQ14207 1427 aa26.78■■□□□ 1.88
HOXC4-201ENST00000303406 ADGRB3O60242 1522 aa26.78■■□□□ 1.88
HOXC4-201ENST00000303406 ARHGAP31Q2M1Z3 1444 aa26.76■■□□□ 1.87
HOXC4-201ENST00000303406 REREQ9P2R6 1566 aa26.75■■□□□ 1.87
HOXC4-201ENST00000303406 FAM69CQ0P6D2 419 aa26.75■■□□□ 1.87
HOXC4-201ENST00000303406 UGGT1Q9NYU2 1555 aa26.74■■□□□ 1.87
HOXC4-201ENST00000303406 NRXN1Q9ULB1 1477 aa26.73■■□□□ 1.87
HOXC4-201ENST00000303406 MROH2AA6NES4 1674 aa26.73■■□□□ 1.87
HOXC4-201ENST00000303406 KTN1Q86UP2 1357 aaKnown RBP26.72■■□□□ 1.87
HOXC4-201ENST00000303406 NOS1P29475 1434 aa26.72■■□□□ 1.87
HOXC4-201ENST00000303406 SCAF11Q99590 1463 aaKnown RBP26.72■■□□□ 1.87
HOXC4-201ENST00000303406 YEATS2Q9ULM3 1422 aa26.71■■□□□ 1.87
HOXC4-201ENST00000303406 GGT6Q6P531 493 aa26.7■■□□□ 1.87
HOXC4-201ENST00000303406 TESK2Q96S53 571 aa26.7■■□□□ 1.87
HOXC4-201ENST00000303406 WASHC2CQ9Y4E1 1318 aa26.69■■□□□ 1.86
HOXC4-201ENST00000303406 PIK3C2BO00750 1634 aa26.69■■□□□ 1.86
HOXC4-201ENST00000303406 POLR3GLQ9BT43 218 aa26.65■■□□□ 1.86
HOXC4-201ENST00000303406 AGLP35573 1532 aa26.65■■□□□ 1.86
HOXC4-201ENST00000303406 PPLO60437 1756 aa26.64■■□□□ 1.86
HOXC4-201ENST00000303406 EIF3AQ14152 1382 aaKnown RBP26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms