RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 PDE3BQ13370 1112 aa17.06■□□□□ 0.32
CASC4-201ENST00000299957 ANP32BQ92688 251 aaKnown RBP17.06■□□□□ 0.32
CASC4-201ENST00000299957 BRPF3Q9ULD4 1205 aa17.06■□□□□ 0.32
CASC4-201ENST00000299957 CDK13Q14004 1512 aaKnown RBP17.06■□□□□ 0.32
CASC4-201ENST00000299957 MLECQ14165 292 aa17.06■□□□□ 0.32
CASC4-201ENST00000299957 ITPRIPQ8IWB1 547 aa17.06■□□□□ 0.32
CASC4-201ENST00000299957 ANO8Q9HCE9 1232 aaPredicted RBP17.06■□□□□ 0.32
CASC4-201ENST00000299957 ESF1Q9H501 851 aaKnown RBP17.05■□□□□ 0.32
CASC4-201ENST00000299957 ANKRD50Q9ULJ7 1429 aa17.04■□□□□ 0.32
CASC4-201ENST00000299957 CARMIL2Q6F5E8 1435 aa17.04■□□□□ 0.32
CASC4-201ENST00000299957 BCAR3O75815 825 aa17.04■□□□□ 0.32
CASC4-201ENST00000299957 CENPJQ9HC77 1338 aaPredicted RBP17.03■□□□□ 0.32
CASC4-201ENST00000299957 MYH16Q9H6N6 1097 aa17.02■□□□□ 0.32
CASC4-201ENST00000299957 TRIM44Q96DX7 344 aaPredicted RBP17.02■□□□□ 0.31
CASC4-201ENST00000299957 EFCAB2Q5VUJ9 269 aa17.01■□□□□ 0.31
CASC4-201ENST00000299957 FAM161AQ3B820 660 aa17.01■□□□□ 0.31
CASC4-201ENST00000299957 NFKBIBQ15653 356 aa17.01■□□□□ 0.31
CASC4-201ENST00000299957 C14orf37Q86TY3 774 aa17■□□□□ 0.31
CASC4-201ENST00000299957 SMC4Q9NTJ3 1288 aa17■□□□□ 0.31
CASC4-201ENST00000299957 HSP90AB1P08238 724 aaKnown RBP17■□□□□ 0.31
CASC4-201ENST00000299957 GSE1Q14687 1217 aa16.99■□□□□ 0.31
CASC4-201ENST00000299957 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
CASC4-201ENST00000299957 NUTM2FA1L443 756 aa16.99■□□□□ 0.31
CASC4-201ENST00000299957 AFAP1Q8N556 730 aa16.99■□□□□ 0.31
CASC4-201ENST00000299957 FRAT2O75474 233 aaPredicted RBP16.99■□□□□ 0.31
CASC4-201ENST00000299957 TMEM132EQ6IEE7 984 aa16.98■□□□□ 0.31
CASC4-201ENST00000299957 SPAG9O60271 1321 aaKnown RBP16.98■□□□□ 0.31
CASC4-201ENST00000299957 CENPQQ7L2Z9 268 aaPredicted RBP16.98■□□□□ 0.31
CASC4-201ENST00000299957 BACH2Q9BYV9 841 aa16.97■□□□□ 0.31
CASC4-201ENST00000299957 ANKRD30BQ9BXX2 1392 aa16.97■□□□□ 0.31
CASC4-201ENST00000299957 ARID3AQ99856 593 aa16.97■□□□□ 0.31
CASC4-201ENST00000299957 CFAP70Q5T0N1 1121 aa16.96■□□□□ 0.31
CASC4-201ENST00000299957 PRDM2Q13029 1718 aa16.96■□□□□ 0.31
CASC4-201ENST00000299957 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.96■□□□□ 0.3
CASC4-201ENST00000299957 HSCBQ8IWL3 235 aa16.93■□□□□ 0.3
CASC4-201ENST00000299957 PPP2R1AP30153 589 aa16.93■□□□□ 0.3
CASC4-201ENST00000299957 RWDD1Q9H446 243 aaPredicted RBP16.91■□□□□ 0.3
CASC4-201ENST00000299957 PTPRGP23470 1445 aa16.91■□□□□ 0.3
CASC4-201ENST00000299957 BRD4O60885 1362 aaPredicted RBP16.91■□□□□ 0.3
CASC4-201ENST00000299957 UNC13AQ9UPW8 1703 aa16.91■□□□□ 0.3
CASC4-201ENST00000299957 SMG6Q86US8 1419 aaKnown RBP16.9■□□□□ 0.3
CASC4-201ENST00000299957 DAPK1P53355 1430 aa16.9■□□□□ 0.3
CASC4-201ENST00000299957 FOXD4L5Q5VV16 416 aaPredicted RBP16.9■□□□□ 0.3
CASC4-201ENST00000299957 FOXD4L4Q8WXT5 416 aaPredicted RBP16.9■□□□□ 0.3
CASC4-201ENST00000299957 MS4A1P11836 297 aa16.9■□□□□ 0.3
CASC4-201ENST00000299957 PLCB2Q00722 1185 aa16.9■□□□□ 0.3
CASC4-201ENST00000299957 NCOA1Q15788 1441 aa16.89■□□□□ 0.29
CASC4-201ENST00000299957 NOL8Q76FK4 1167 aaKnown RBP16.88■□□□□ 0.29
CASC4-201ENST00000299957 SLC12A5Q9H2X9 1139 aa16.88■□□□□ 0.29
CASC4-201ENST00000299957 TAOK2Q9UL54 1235 aa16.88■□□□□ 0.29
CASC4-201ENST00000299957 KIAA1107Q9UPP5 1409 aa16.88■□□□□ 0.29
CASC4-201ENST00000299957 KANK1Q14678 1352 aa16.87■□□□□ 0.29
CASC4-201ENST00000299957 E9PSI1 815 aa16.87■□□□□ 0.29
CASC4-201ENST00000299957 EPRSP07814 1512 aaKnown RBP16.86■□□□□ 0.29
CASC4-201ENST00000299957 ABCC5O15440 1437 aa16.86■□□□□ 0.29
CASC4-201ENST00000299957 FOXD4L6Q3SYB3 417 aaPredicted RBP16.86■□□□□ 0.29
CASC4-201ENST00000299957 FOXD4L3Q6VB84 417 aaPredicted RBP16.86■□□□□ 0.29
CASC4-201ENST00000299957 GGNBP2Q9H3C7 697 aa16.86■□□□□ 0.29
CASC4-201ENST00000299957 MINK1Q8N4C8 1332 aaPredicted RBP16.86■□□□□ 0.29
CASC4-201ENST00000299957 GOLGA6L22H0YM25 854 aa16.85■□□□□ 0.29
CASC4-201ENST00000299957 TSR2Q969E8 191 aaKnown RBP16.84■□□□□ 0.29
CASC4-201ENST00000299957 USP35Q9P2H5 1018 aa16.84■□□□□ 0.29
CASC4-201ENST00000299957 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.84■□□□□ 0.297e-7■■■■■ 52.8
CASC4-201ENST00000299957 MTHFSP49914 203 aa16.84■□□□□ 0.29
CASC4-201ENST00000299957 TCP11L2Q8N4U5 519 aa16.84■□□□□ 0.29
CASC4-201ENST00000299957 LNPKQ9C0E8 428 aa16.84■□□□□ 0.29
CASC4-201ENST00000299957 WASHC2CQ9Y4E1 1318 aa16.83■□□□□ 0.28
CASC4-201ENST00000299957 PMFBP1Q8TBY8 1022 aa16.83■□□□□ 0.28
CASC4-201ENST00000299957 PTPN23Q9H3S7 1636 aa16.82■□□□□ 0.28
CASC4-201ENST00000299957 CABP2Q9NPB3 220 aa16.82■□□□□ 0.28
CASC4-201ENST00000299957 ANKRD45Q5TZF3 282 aa16.81■□□□□ 0.28
CASC4-201ENST00000299957 RSPH4AQ5TD94 716 aa16.81■□□□□ 0.28
CASC4-201ENST00000299957 EFCAB5A4FU69 1503 aa16.81■□□□□ 0.28
CASC4-201ENST00000299957 HMGXB3Q12766 1538 aa16.81■□□□□ 0.28
CASC4-201ENST00000299957 PLB1Q6P1J6 1458 aa16.8■□□□□ 0.28
CASC4-201ENST00000299957 PTMAP06454 111 aaKnown RBP16.8■□□□□ 0.28
CASC4-201ENST00000299957 EHBP1L1Q8N3D4 1523 aa16.8■□□□□ 0.28
CASC4-201ENST00000299957 GOLGA6L3A6NEY3 463 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 C9orf84Q5VXU9 1444 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 LMOD2Q6P5Q4 547 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 PEG3Q9GZU2 1588 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 HMOX1P09601 288 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 SLC4A10Q6U841 1118 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 MIA2Q96PC5 1412 aa16.79■□□□□ 0.28
CASC4-201ENST00000299957 PNNQ9H307 717 aaKnown RBP16.78■□□□□ 0.28
CASC4-201ENST00000299957 CGNL1Q0VF96 1302 aa16.78■□□□□ 0.28
CASC4-201ENST00000299957 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
CASC4-201ENST00000299957 DNTTIP2Q5QJE6 756 aaKnown RBP16.77■□□□□ 0.28
CASC4-201ENST00000299957 ZKSCAN2Q63HK3 967 aa16.77■□□□□ 0.28
CASC4-201ENST00000299957 BIVM-ERCC5R4GMW8 1640 aa16.77■□□□□ 0.27
CASC4-201ENST00000299957 C1orf115Q9H7X2 142 aa16.77■□□□□ 0.27
CASC4-201ENST00000299957 L1TD1Q5T7N2 865 aaKnown RBP16.76■□□□□ 0.27
CASC4-201ENST00000299957 RPRD2Q5VT52 1461 aaKnown RBP16.76■□□□□ 0.27
CASC4-201ENST00000299957 PDZRN3Q9UPQ7 1066 aa16.75■□□□□ 0.27
CASC4-201ENST00000299957 RIPK4P57078 832 aa16.75■□□□□ 0.27
CASC4-201ENST00000299957 GLIPR1L2Q4G1C9 344 aa16.75■□□□□ 0.27
CASC4-201ENST00000299957 IPO8O15397 1037 aaKnown RBP16.75■□□□□ 0.27
CASC4-201ENST00000299957 DZIP1LQ8IYY4 767 aaKnown RBP16.74■□□□□ 0.27
CASC4-201ENST00000299957 TROQ12816 1431 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms