RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NEFLP07196 543 aa27.68■■■□□ 2.02
VPS53-201ENST00000291074 CNGB1Q14028 1251 aaPredicted RBP27.68■■■□□ 2.02
VPS53-201ENST00000291074 CCDC144AA2RUR9 1427 aa27.67■■■□□ 2.02
VPS53-201ENST00000291074 FAM9BQ8IZU0 186 aa27.67■■■□□ 2.02
VPS53-201ENST00000291074 DHX29Q7Z478 1369 aaKnown RBP27.66■■■□□ 2.02
VPS53-201ENST00000291074 PLA2R1Q13018 1463 aa27.66■■■□□ 2.02
VPS53-201ENST00000291074 IQGAP3Q86VI3 1631 aa27.66■■■□□ 2.02
VPS53-201ENST00000291074 ABCC1P33527 1531 aa27.65■■■□□ 2.02
VPS53-201ENST00000291074 DUOX2Q9NRD8 1548 aa27.65■■■□□ 2.02
VPS53-201ENST00000291074 EFCAB2Q5VUJ9 269 aa27.64■■■□□ 2.02
VPS53-201ENST00000291074 TRAPPC8Q9Y2L5 1435 aa27.63■■■□□ 2.01
VPS53-201ENST00000291074 RGL3Q3MIN7 710 aa27.62■■■□□ 2.01
VPS53-201ENST00000291074 ST20-MTHFSA0A0A6YYL1 179 aa27.61■■■□□ 2.01
VPS53-201ENST00000291074 ROCK2O75116 1388 aaKnown RBP27.59■■■□□ 2.01
VPS53-201ENST00000291074 TRPM1Q7Z4N2 1603 aa27.58■■■□□ 2.01
VPS53-201ENST00000291074 ERBINQ96RT1 1412 aa27.58■■■□□ 2
VPS53-201ENST00000291074 MAGI2Q86UL8 1455 aa27.57■■■□□ 2
VPS53-201ENST00000291074 PRAG1Q86YV5 1406 aa27.57■■■□□ 2
VPS53-201ENST00000291074 ARID4BQ4LE39 1312 aaPredicted RBP27.56■■■□□ 2
VPS53-201ENST00000291074 A2MP01023 1474 aa27.56■■■□□ 2
VPS53-201ENST00000291074 TSHZ2Q9NRE2 1034 aa27.52■■■□□ 2
VPS53-201ENST00000291074 AFAP1Q8N556 730 aa27.52■■■□□ 2
VPS53-201ENST00000291074 NBPF1Q3BBV0 1214 aa27.51■■□□□ 1.99
VPS53-201ENST00000291074 SPAG9O60271 1321 aaKnown RBP27.49■■□□□ 1.99
VPS53-201ENST00000291074 WDR7Q9Y4E6 1490 aa27.49■■□□□ 1.99
VPS53-201ENST00000291074 IRX6P78412 446 aaPredicted RBP27.48■■□□□ 1.99
VPS53-201ENST00000291074 ZFYVE16Q7Z3T8 1539 aa27.48■■□□□ 1.99
VPS53-201ENST00000291074 ARAP3Q8WWN8 1544 aa27.46■■□□□ 1.99
VPS53-201ENST00000291074 ZBED9Q6R2W3 1325 aa27.45■■□□□ 1.98
VPS53-201ENST00000291074 ATP10AO60312 1499 aa27.44■■□□□ 1.98
VPS53-201ENST00000291074 E9PCH4 1651 aa27.44■■□□□ 1.98
VPS53-201ENST00000291074 ABCA9Q8IUA7 1624 aa27.41■■□□□ 1.98
VPS53-201ENST00000291074 FANCAO15360 1455 aa27.41■■□□□ 1.98
VPS53-201ENST00000291074 GPRASP1Q5JY77 1395 aa27.39■■□□□ 1.98
VPS53-201ENST00000291074 RTEL1-TNFRSF6BF6WH68 1400 aa27.39■■□□□ 1.98
VPS53-201ENST00000291074 PRDM15P57071 1507 aaPredicted RBP27.37■■□□□ 1.97
VPS53-201ENST00000291074 LAMC1P11047 1609 aa27.36■■□□□ 1.97
VPS53-201ENST00000291074 EIF2AK4Q9P2K8 1649 aaKnown RBP27.36■■□□□ 1.97
VPS53-201ENST00000291074 ATP7AQ04656 1500 aa27.36■■□□□ 1.97
VPS53-201ENST00000291074 INO80Q9ULG1 1556 aaPredicted RBP27.35■■□□□ 1.97
VPS53-201ENST00000291074 DEPDC5O75140 1603 aa27.33■■□□□ 1.97
VPS53-201ENST00000291074 SENP3-EIF4A1A0A087X0R7 540 aa27.33■■□□□ 1.97
VPS53-201ENST00000291074 ASXL2Q76L83 1435 aa27.33■■□□□ 1.97
VPS53-201ENST00000291074 ADGRL1O94910 1474 aa27.32■■□□□ 1.96
VPS53-201ENST00000291074 SPHKAPQ2M3C7 1700 aa27.31■■□□□ 1.96
VPS53-201ENST00000291074 MYT1LQ9UL68 1186 aa27.31■■□□□ 1.96
VPS53-201ENST00000291074 DISP3Q9P2K9 1392 aa27.31■■□□□ 1.96
VPS53-201ENST00000291074 TMC1Q8TDI8 760 aa27.3■■□□□ 1.96
VPS53-201ENST00000291074 COL17A1Q9UMD9 1497 aaPredicted RBP27.3■■□□□ 1.96
VPS53-201ENST00000291074 SCAPERQ9BY12 1400 aa27.3■■□□□ 1.96
VPS53-201ENST00000291074 TRPM2O94759 1503 aa27.29■■□□□ 1.96
VPS53-201ENST00000291074 PNISRQ8TF01 805 aaKnown RBP27.29■■□□□ 1.96
VPS53-201ENST00000291074 TESK2Q96S53 571 aa27.29■■□□□ 1.96
VPS53-201ENST00000291074 RNF17Q9BXT8 1623 aaKnown RBP27.29■■□□□ 1.96
VPS53-201ENST00000291074 CLTCL1P53675 1640 aa27.28■■□□□ 1.96
VPS53-201ENST00000291074 CEP152O94986 1710 aa27.27■■□□□ 1.96
VPS53-201ENST00000291074 TET3O43151 1660 aa27.27■■□□□ 1.96
VPS53-201ENST00000291074 MADDQ8WXG6 1647 aa27.26■■□□□ 1.95
VPS53-201ENST00000291074 MYBBP1AQ9BQG0 1328 aaKnown RBP27.25■■□□□ 1.95
VPS53-201ENST00000291074 KIF3BO15066 747 aa27.25■■□□□ 1.95
VPS53-201ENST00000291074 RALBP1Q15311 655 aa27.23■■□□□ 1.95
VPS53-201ENST00000291074 PTPRTO14522 1441 aa27.23■■□□□ 1.95
VPS53-201ENST00000291074 VWDEQ8N2E2 1590 aa27.21■■□□□ 1.95
VPS53-201ENST00000291074 BRD4O60885 1362 aaPredicted RBP27.2■■□□□ 1.95
VPS53-201ENST00000291074 KTN1Q86UP2 1357 aaKnown RBP27.2■■□□□ 1.95
VPS53-201ENST00000291074 MROH1Q8NDA8 1641 aa27.2■■□□□ 1.95
VPS53-201ENST00000291074 KANK1Q14678 1352 aa27.19■■□□□ 1.94
VPS53-201ENST00000291074 PER1O15534 1290 aaPredicted RBP27.19■■□□□ 1.94
VPS53-201ENST00000291074 KIDINS220Q9ULH0 1771 aa27.18■■□□□ 1.94
VPS53-201ENST00000291074 SMG6Q86US8 1419 aaKnown RBP27.17■■□□□ 1.94
VPS53-201ENST00000291074 LRPPRCP42704 1394 aaKnown RBP27.17■■□□□ 1.94
VPS53-201ENST00000291074 PARD3Q8TEW0 1356 aa27.17■■□□□ 1.94
VPS53-201ENST00000291074 IQGAP1P46940 1657 aa27.16■■□□□ 1.94
VPS53-201ENST00000291074 TMF1P82094 1093 aa27.15■■□□□ 1.94
VPS53-201ENST00000291074 UGGT1Q9NYU2 1555 aa27.15■■□□□ 1.94
VPS53-201ENST00000291074 OSCARQ8IYS5 282 aa27.13■■□□□ 1.93
VPS53-201ENST00000291074 PANK3Q9H999 370 aa27.13■■□□□ 1.93
VPS53-201ENST00000291074 CC2D1BQ5T0F9 858 aaKnown RBP27.13■■□□□ 1.93
VPS53-201ENST00000291074 NUDCQ9Y266 331 aa27.13■■□□□ 1.93
VPS53-201ENST00000291074 ERICH6BQ5W0A0 696 aa27.11■■□□□ 1.93
VPS53-201ENST00000291074 NLRP13Q86W25 1043 aa27.11■■□□□ 1.93
VPS53-201ENST00000291074 PPP4R2Q9NY27 417 aa27.11■■□□□ 1.93
VPS53-201ENST00000291074 NPM1P06748 294 aaKnown RBP eCLIP27.1■■□□□ 1.93
VPS53-201ENST00000291074 ZNF518AQ6AHZ1 1483 aa27.08■■□□□ 1.93
VPS53-201ENST00000291074 PPRC1Q5VV67 1664 aaKnown RBP27.07■■□□□ 1.92
VPS53-201ENST00000291074 EFCAB6Q5THR3 1501 aa27.07■■□□□ 1.92
VPS53-201ENST00000291074 SCAF11Q99590 1463 aaKnown RBP27.05■■□□□ 1.92
VPS53-201ENST00000291074 RBM19Q9Y4C8 960 aaKnown RBP27.04■■□□□ 1.92
VPS53-201ENST00000291074 CD109Q6YHK3 1445 aa27.04■■□□□ 1.92
VPS53-201ENST00000291074 B4GALNT3Q6L9W6 998 aa27.04■■□□□ 1.92
VPS53-201ENST00000291074 KIF1BO60333 1816 aa27.03■■□□□ 1.92
VPS53-201ENST00000291074 MROH2AA6NES4 1674 aa27.02■■□□□ 1.92
VPS53-201ENST00000291074 WASHC2CQ9Y4E1 1318 aa27.01■■□□□ 1.91
VPS53-201ENST00000291074 SALL2Q9Y467 1007 aaPredicted RBP27.01■■□□□ 1.91
VPS53-201ENST00000291074 CFAP65Q6ZU64 1925 aaKnown RBP27■■□□□ 1.91
VPS53-201ENST00000291074 STAC3Q96MF2 364 aa27■■□□□ 1.91
VPS53-201ENST00000291074 POGZQ7Z3K3 1410 aa27■■□□□ 1.91
VPS53-201ENST00000291074 ABCA6Q8N139 1617 aa26.99■■□□□ 1.91
VPS53-201ENST00000291074 MAP3K4Q9Y6R4 1608 aa26.99■■□□□ 1.91
VPS53-201ENST00000291074 KIAA1210Q9ULL0 1709 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms